Wall clock time and date at job start Mon Mar 30 2020 07:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 110.99738 * 2 1 4 4 C 1.53041 * 109.52299 * 174.16035 * 3 2 1 5 5 C 1.53123 * 109.27658 * 59.17543 * 4 3 2 6 6 C 1.53098 * 109.15738 * 302.34675 * 5 4 3 7 7 C 1.46842 * 110.99811 * 235.78901 * 2 1 3 8 8 H 1.09000 * 109.46622 * 65.82977 * 7 2 1 9 9 C 1.52996 * 109.46501 * 305.84350 * 7 2 1 10 10 C 1.50701 * 109.47423 * 175.99914 * 9 7 2 11 11 N 1.29521 * 124.56273 * 95.32755 * 10 9 7 12 12 C 1.30676 * 117.63113 * 179.97438 * 11 10 9 13 13 C 1.38583 * 113.55198 * 359.97438 * 12 11 10 14 14 C 1.40038 * 126.25654 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00535 * 179.97438 * 14 13 12 16 16 C 1.40075 * 119.99756 * 359.96659 * 14 13 12 17 17 N 1.30863 * 120.00305 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46975 * 90.00467 * 18 16 14 20 20 H 1.48508 * 109.46904 * 210.00326 * 18 16 14 21 21 H 1.48500 * 109.47167 * 330.00199 * 18 16 14 22 22 S 1.70885 * 124.55839 * 275.02967 * 10 9 7 23 23 H 1.09002 * 109.47238 * 190.78777 * 1 2 3 24 24 H 1.09000 * 109.47284 * 310.79144 * 1 2 3 25 25 H 1.09001 * 109.47142 * 70.79034 * 1 2 3 26 26 H 1.09003 * 109.46081 * 294.17572 * 3 2 1 27 27 H 1.08998 * 109.46614 * 54.15103 * 3 2 1 28 28 H 1.08996 * 109.50403 * 179.12001 * 4 3 2 29 29 H 1.08996 * 109.50189 * 299.19893 * 4 3 2 30 30 H 1.09003 * 109.52252 * 62.25563 * 5 4 3 31 31 H 1.09004 * 109.51992 * 182.37617 * 5 4 3 32 32 H 1.08996 * 109.50604 * 297.71380 * 6 5 4 33 33 H 1.08999 * 109.48527 * 177.60061 * 6 5 4 34 34 H 1.09003 * 109.47013 * 295.99990 * 9 7 2 35 35 H 1.08999 * 109.47381 * 55.99769 * 9 7 2 36 36 H 1.08002 * 123.22507 * 180.02562 * 12 11 10 37 37 H 0.96997 * 120.00250 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5181 -0.8713 -1.0207 7 6 1.9952 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3893 -2.1756 -1.1202 10 6 1.8523 -2.9342 -2.3372 11 7 2.8660 -3.7401 -2.3590 12 6 3.1478 -4.3290 -3.4910 13 6 2.2880 -3.9865 -4.5225 14 6 2.3449 -4.4590 -5.8395 15 1 1.6192 -4.1235 -6.5655 16 6 3.3433 -5.3668 -6.2153 17 7 4.2225 -5.7737 -5.3357 18 14 3.4196 -5.9966 -7.9724 19 1 4.2792 -5.0974 -8.7835 20 1 3.9895 -7.3679 -7.9823 21 1 2.0510 -6.0251 -8.5479 22 16 1.1062 -2.8524 -3.8724 23 1 -0.3634 -1.0095 0.1924 24 1 -0.3634 0.6714 0.7780 25 1 -0.3633 0.3381 -0.9704 26 1 1.7324 1.8608 -0.9376 27 1 1.5634 1.9257 0.8330 28 1 3.9098 2.3513 0.1310 29 1 3.7813 0.8575 1.0909 30 1 3.8887 1.0354 -1.9560 31 1 5.1999 0.4724 -0.8911 32 1 3.7813 -1.3833 -0.0952 33 1 3.9101 -1.4299 -1.8706 34 1 1.7101 -2.7010 -0.2207 35 1 0.3018 -2.1024 -1.1297 36 1 3.9713 -5.0174 -3.6110 37 1 4.9137 -6.4026 -5.5958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:52 Heat of formation + Delta-G solvation = 14.644535 kcal Electronic energy + Delta-G solvation = -18101.025869 eV Core-core repulsion = 15389.595663 eV Total energy + Delta-G solvation = -2711.430206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.06749 -37.38990 -34.29062 -33.40078 -32.33002 -29.36256 -27.68748 -26.32484 -24.39063 -22.77099 -22.32755 -20.83005 -19.35967 -19.01337 -16.81615 -16.38784 -15.59136 -15.07383 -14.76749 -14.28265 -14.03432 -13.72942 -13.45307 -12.85032 -12.77021 -12.43185 -12.21642 -12.06490 -11.73965 -11.48989 -11.45221 -11.34984 -11.17251 -11.03036 -10.65866 -10.35741 -10.34183 -10.05131 -9.89999 -9.66070 -9.58989 -8.09543 -7.95044 -7.90210 -7.18689 -6.98131 -4.58018 2.40731 2.88446 2.93672 3.01369 3.21699 3.62947 3.73548 4.11847 4.42329 4.99956 5.06029 5.12477 5.18764 5.34723 5.53580 5.61005 5.71211 5.73829 5.80851 5.91145 5.96857 6.03575 6.10990 6.15874 6.23187 6.33979 6.54159 6.63088 6.66187 6.73404 6.90609 7.14042 7.31018 7.38921 7.48587 7.78626 8.13913 8.35577 8.66211 9.82160 9.83491 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035416 B = 0.004723 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.412011 B = 5926.862727 C = 6242.886766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.102 4.102 7 C 0.096 3.904 8 H 0.037 0.963 9 C -0.001 4.001 10 C -0.123 4.123 11 N -0.418 5.418 12 C -0.142 4.142 13 C 0.017 3.983 14 C -0.376 4.376 15 H 0.086 0.914 16 C 0.064 3.936 17 N -0.766 5.766 18 Si 0.934 3.066 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.258 1.258 22 S -0.069 6.069 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.195 0.805 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 8.416 4.361 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.160 4.160 6 C -0.140 4.140 7 C -0.013 4.013 8 H 0.055 0.945 9 C -0.042 4.042 10 C -0.392 4.392 11 N -0.130 5.130 12 C -0.296 4.296 13 C -0.105 4.105 14 C -0.413 4.413 15 H 0.104 0.896 16 C -0.158 4.158 17 N -0.390 5.390 18 Si 0.757 3.243 19 H -0.189 1.189 20 H -0.196 1.196 21 H -0.182 1.182 22 S 0.181 5.819 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.211 0.789 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.354 8.553 5.086 10.226 hybrid contribution 0.424 -0.447 -1.673 1.782 sum -1.930 8.106 3.414 9.005 Atomic orbital electron populations 1.22392 0.87948 1.02459 0.99762 1.61956 1.07160 1.12916 1.44488 1.22054 0.95711 0.89526 0.99785 1.21578 0.94499 0.99587 0.99609 1.21616 0.99725 0.96780 0.97907 1.21512 0.93619 0.95674 1.03218 1.21674 0.95484 0.93873 0.90271 0.94461 1.19671 0.97983 0.92206 0.94378 1.24855 1.04027 1.13269 0.97061 1.65427 1.13335 1.05179 1.29045 1.23117 1.08437 1.12199 0.85870 1.23298 0.93821 0.94984 0.98361 1.19035 1.09928 1.18523 0.93857 0.89586 1.26114 0.93996 0.95002 1.00719 1.69473 1.11140 1.23247 1.35166 0.85864 0.80029 0.78599 0.79803 1.18935 1.19613 1.18197 1.82981 1.38305 1.50476 1.10187 0.90888 0.92055 0.95794 0.95367 0.91293 0.92162 0.91267 0.92688 0.92141 0.91541 0.90442 0.90704 0.92321 0.78869 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.89 60.06 0.53 0.83 16 2 N -0.54 -8.11 4.75 -234.93 -1.11 -9.22 16 3 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 4 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 5 C -0.12 -1.79 6.00 -26.62 -0.16 -1.95 16 6 C -0.10 -1.82 5.16 -26.66 -0.14 -1.96 16 7 C 0.10 1.68 1.90 -67.72 -0.13 1.55 16 8 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 9 C 0.00 -0.02 4.98 -27.88 -0.14 -0.16 16 10 C -0.12 -2.91 5.70 -13.25 -0.08 -2.99 16 11 N -0.42 -10.97 10.04 -10.84 -0.11 -11.08 16 12 C -0.14 -3.92 10.55 -17.92 -0.19 -4.11 16 13 C 0.02 0.45 6.30 -38.78 -0.24 0.20 16 14 C -0.38 -9.56 9.42 -38.22 -0.36 -9.92 16 15 H 0.09 2.06 7.85 -52.49 -0.41 1.64 16 16 C 0.06 1.52 5.50 -17.28 -0.09 1.42 16 17 N -0.77 -18.66 10.18 55.56 0.57 -18.09 16 18 Si 0.93 17.33 29.56 -169.99 -5.03 12.30 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 22 S -0.07 -1.64 23.13 -107.50 -2.49 -4.12 16 23 H 0.07 0.96 6.53 -51.93 -0.34 0.62 16 24 H 0.06 0.67 7.97 -51.93 -0.41 0.26 16 25 H 0.02 0.32 8.12 -51.93 -0.42 -0.11 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.63 7.03 -51.93 -0.36 1.26 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.06 1.07 6.24 -51.93 -0.32 0.74 16 36 H 0.20 5.49 5.36 -52.49 -0.28 5.21 16 37 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -27.12 305.46 -10.23 -37.35 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.49 Total: 6.22 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.18 Total: -17.96 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.66 Total: -38.39 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.49 Total: -4.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.12 -10.23 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.997 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds