Wall clock time and date at job start Mon Mar 30 2020 07:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 110.99738 * 2 1 4 4 C 1.53041 * 109.52299 * 174.16035 * 3 2 1 5 5 C 1.53123 * 109.27658 * 59.17543 * 4 3 2 6 6 C 1.53098 * 109.15738 * 302.34675 * 5 4 3 7 7 C 1.46842 * 110.99811 * 235.78901 * 2 1 3 8 8 H 1.09000 * 109.46622 * 65.82977 * 7 2 1 9 9 C 1.52996 * 109.46501 * 305.84350 * 7 2 1 10 10 C 1.50701 * 109.47423 * 175.99914 * 9 7 2 11 11 N 1.29521 * 124.56273 * 95.32755 * 10 9 7 12 12 C 1.30676 * 117.63113 * 179.97438 * 11 10 9 13 13 C 1.38583 * 113.55198 * 359.97438 * 12 11 10 14 14 C 1.40038 * 126.25654 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00535 * 179.97438 * 14 13 12 16 16 C 1.40075 * 119.99756 * 359.96659 * 14 13 12 17 17 N 1.30863 * 120.00305 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46975 * 90.00467 * 18 16 14 20 20 H 1.48508 * 109.46904 * 210.00326 * 18 16 14 21 21 H 1.48500 * 109.47167 * 330.00199 * 18 16 14 22 22 S 1.70885 * 124.55839 * 275.02967 * 10 9 7 23 23 H 1.09002 * 109.47238 * 190.78777 * 1 2 3 24 24 H 1.09000 * 109.47284 * 310.79144 * 1 2 3 25 25 H 1.09001 * 109.47142 * 70.79034 * 1 2 3 26 26 H 1.09003 * 109.46081 * 294.17572 * 3 2 1 27 27 H 1.08998 * 109.46614 * 54.15103 * 3 2 1 28 28 H 1.08996 * 109.50403 * 179.12001 * 4 3 2 29 29 H 1.08996 * 109.50189 * 299.19893 * 4 3 2 30 30 H 1.09003 * 109.52252 * 62.25563 * 5 4 3 31 31 H 1.09004 * 109.51992 * 182.37617 * 5 4 3 32 32 H 1.08996 * 109.50604 * 297.71380 * 6 5 4 33 33 H 1.08999 * 109.48527 * 177.60061 * 6 5 4 34 34 H 1.09003 * 109.47013 * 295.99990 * 9 7 2 35 35 H 1.08999 * 109.47381 * 55.99769 * 9 7 2 36 36 H 1.08002 * 123.22507 * 180.02562 * 12 11 10 37 37 H 0.96997 * 120.00250 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5181 -0.8713 -1.0207 7 6 1.9952 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3893 -2.1756 -1.1202 10 6 1.8523 -2.9342 -2.3372 11 7 2.8660 -3.7401 -2.3590 12 6 3.1478 -4.3290 -3.4910 13 6 2.2880 -3.9865 -4.5225 14 6 2.3449 -4.4590 -5.8395 15 1 1.6192 -4.1235 -6.5655 16 6 3.3433 -5.3668 -6.2153 17 7 4.2225 -5.7737 -5.3357 18 14 3.4196 -5.9966 -7.9724 19 1 4.2792 -5.0974 -8.7835 20 1 3.9895 -7.3679 -7.9823 21 1 2.0510 -6.0251 -8.5479 22 16 1.1062 -2.8524 -3.8724 23 1 -0.3634 -1.0095 0.1924 24 1 -0.3634 0.6714 0.7780 25 1 -0.3633 0.3381 -0.9704 26 1 1.7324 1.8608 -0.9376 27 1 1.5634 1.9257 0.8330 28 1 3.9098 2.3513 0.1310 29 1 3.7813 0.8575 1.0909 30 1 3.8887 1.0354 -1.9560 31 1 5.1999 0.4724 -0.8911 32 1 3.7813 -1.3833 -0.0952 33 1 3.9101 -1.4299 -1.8706 34 1 1.7101 -2.7010 -0.2207 35 1 0.3018 -2.1024 -1.1297 36 1 3.9713 -5.0174 -3.6110 37 1 4.9137 -6.4026 -5.5958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:52 Heat of formation + Delta-G solvation = -1.411407 kcal Electronic energy + Delta-G solvation = -18101.722107 eV Core-core repulsion = 15389.595663 eV Total energy + Delta-G solvation = -2712.126444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40307 -39.26074 -36.12275 -34.59043 -33.79546 -31.18904 -29.20770 -27.49522 -26.19680 -24.40370 -23.67685 -22.25392 -21.00464 -20.55620 -18.65261 -18.31314 -16.84340 -16.61490 -16.21553 -15.57788 -15.37697 -15.06571 -15.00060 -14.55509 -14.23009 -13.94924 -13.83284 -13.38002 -13.24984 -13.20770 -12.86652 -12.72639 -12.57310 -12.53485 -12.00621 -11.89640 -11.63854 -11.58440 -11.48678 -11.28694 -11.08474 -9.93678 -9.89262 -9.26878 -9.14376 -8.78261 -6.54609 0.55218 1.21532 1.40399 1.50866 1.56328 1.67015 2.13169 2.49404 2.94631 3.11899 3.83960 3.88585 3.98269 4.07234 4.25846 4.34798 4.45895 4.53393 4.58250 4.68845 4.72967 4.80551 4.84156 4.94334 5.02911 5.06050 5.07059 5.12932 5.22508 5.25027 5.35868 5.46593 5.52663 5.81431 6.13422 6.21305 6.22250 6.43094 6.60311 7.83661 8.06111 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035416 B = 0.004723 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.412011 B = 5926.862727 C = 6242.886766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.099 4.099 7 C 0.108 3.892 8 H 0.021 0.979 9 C 0.002 3.998 10 C -0.114 4.114 11 N -0.440 5.440 12 C -0.182 4.182 13 C -0.014 4.014 14 C -0.401 4.401 15 H 0.096 0.904 16 C 0.024 3.976 17 N -0.793 5.793 18 Si 1.014 2.986 19 H -0.257 1.257 20 H -0.261 1.261 21 H -0.251 1.251 22 S -0.048 6.048 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.179 0.821 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 9.739 4.231 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.270 5.270 3 C -0.074 4.074 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.137 4.137 7 C -0.001 4.001 8 H 0.039 0.961 9 C -0.040 4.040 10 C -0.385 4.385 11 N -0.152 5.152 12 C -0.334 4.334 13 C -0.135 4.135 14 C -0.437 4.437 15 H 0.114 0.886 16 C -0.196 4.196 17 N -0.417 5.417 18 Si 0.831 3.169 19 H -0.181 1.181 20 H -0.185 1.185 21 H -0.175 1.175 22 S 0.202 5.798 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.196 0.804 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.043 9.878 4.978 11.472 hybrid contribution 0.629 -0.830 -1.561 1.876 sum -2.414 9.048 3.417 9.969 Atomic orbital electron populations 1.22478 0.86614 1.03051 1.00628 1.61951 1.08436 1.14133 1.42492 1.22205 0.95991 0.88300 1.00862 1.21570 0.94232 1.00643 0.98236 1.21598 1.00250 0.94897 0.99021 1.21409 0.94126 0.97314 1.00886 1.21381 0.95127 0.92828 0.90806 0.96134 1.19780 0.99020 0.92989 0.92194 1.25605 1.02712 1.11887 0.98262 1.65417 1.14515 1.06274 1.29007 1.22972 1.09517 1.13931 0.86995 1.23646 0.94751 0.96063 0.99076 1.19463 1.11113 1.19486 0.93667 0.88630 1.27232 0.92724 0.94282 1.05362 1.69529 1.11490 1.23241 1.37461 0.84721 0.80384 0.78282 0.73501 1.18086 1.18453 1.17458 1.82708 1.37472 1.49766 1.09903 0.91254 0.89261 0.96069 0.95493 0.88542 0.89375 0.91182 0.93068 0.91346 0.92261 0.94587 0.91086 0.90641 0.80440 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 8.89 127.69 1.13 1.61 16 2 N -0.55 -15.27 4.75 -897.17 -4.26 -19.53 16 3 C 0.05 1.23 5.46 86.33 0.47 1.70 16 4 C -0.11 -2.44 6.09 30.65 0.19 -2.25 16 5 C -0.12 -3.40 6.00 30.67 0.18 -3.22 16 6 C -0.10 -3.59 5.16 30.64 0.16 -3.43 16 7 C 0.11 3.77 1.90 44.94 0.09 3.85 16 8 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 9 C 0.00 0.06 4.98 29.85 0.15 0.21 16 10 C -0.11 -5.51 5.70 88.45 0.50 -5.01 16 11 N -0.44 -24.12 10.04 -188.22 -1.89 -26.01 16 12 C -0.18 -10.55 10.55 84.95 0.90 -9.65 16 13 C -0.01 -0.77 6.30 22.79 0.14 -0.63 16 14 C -0.40 -20.72 9.42 23.15 0.22 -20.51 16 15 H 0.10 4.59 7.85 -2.91 -0.02 4.56 16 16 C 0.02 1.14 5.50 85.28 0.47 1.61 16 17 N -0.79 -39.54 10.18 21.86 0.22 -39.32 16 18 Si 1.01 34.69 29.56 68.60 2.03 36.72 16 19 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 20 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 21 H -0.25 -8.27 7.11 99.48 0.71 -7.57 16 22 S -0.05 -2.33 23.13 -56.49 -1.31 -3.63 16 23 H 0.07 1.68 6.53 -2.39 -0.02 1.67 16 24 H 0.09 1.63 7.97 -2.39 -0.02 1.61 16 25 H 0.02 0.51 8.12 -2.39 -0.02 0.49 16 26 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 1.73 8.01 -2.39 -0.02 1.72 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.58 7.03 -2.39 -0.02 1.56 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.08 2.68 6.24 -2.39 -0.01 2.67 16 36 H 0.18 10.71 5.36 -2.91 -0.02 10.69 16 37 H 0.30 13.17 8.30 -92.71 -0.77 12.40 16 Total: -1.00 -60.85 305.46 0.45 -60.40 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 1.05 Total: 27.08 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 4.60 Total: -35.71 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -5.93 Total: -84.86 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -1.31 Total: -3.63 kcal Total: -60.85 0.45 -60.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.988 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds