Wall clock time and date at job start Mon Mar 30 2020 07:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47252 * 2 1 4 4 N 1.46900 * 109.46718 * 239.99886 * 2 1 3 5 5 C 1.47901 * 111.00497 * 296.66314 * 4 2 1 6 6 C 1.53991 * 107.05986 * 214.16074 * 5 4 2 7 7 C 1.54601 * 105.14140 * 1.21746 * 6 5 4 8 8 H 1.09000 * 110.72201 * 263.60500 * 7 6 5 9 9 C 1.50697 * 110.72681 * 140.31622 * 7 6 5 10 10 N 1.29520 * 124.56048 * 301.16102 * 9 7 6 11 11 C 1.30678 * 117.62625 * 179.75889 * 10 9 7 12 12 C 1.38582 * 113.55343 * 0.51197 * 11 10 9 13 13 C 1.40044 * 126.25454 * 179.76219 * 12 11 10 14 14 H 1.08001 * 119.99705 * 179.97438 * 13 12 11 15 15 C 1.40067 * 120.00207 * 359.96334 * 13 12 11 16 16 N 1.30868 * 119.99982 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00005 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47233 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46874 * 120.00585 * 17 15 13 20 20 H 1.48499 * 109.47516 * 239.99811 * 17 15 13 21 21 S 1.70889 * 124.55948 * 121.45307 * 9 7 6 22 22 C 1.48533 * 110.99884 * 179.26288 * 4 2 1 23 23 H 1.09001 * 109.46437 * 305.52915 * 1 2 3 24 24 H 1.08997 * 109.47302 * 185.52739 * 1 2 3 25 25 H 1.09007 * 109.47085 * 65.52403 * 1 2 3 26 26 H 1.09000 * 109.47126 * 120.00273 * 2 1 3 27 27 H 1.08993 * 109.47184 * 60.00298 * 3 2 1 28 28 H 1.09007 * 109.47157 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47278 * 300.00180 * 3 2 1 30 30 H 1.09000 * 109.91298 * 333.50772 * 5 4 2 31 31 H 1.08994 * 109.92157 * 94.80190 * 5 4 2 32 32 H 1.08996 * 110.31196 * 120.13524 * 6 5 4 33 33 H 1.09002 * 110.30895 * 242.20691 * 6 5 4 34 34 H 1.08006 * 123.22464 * 180.28112 * 11 10 9 35 35 H 0.97001 * 119.99941 * 179.97438 * 16 15 13 36 36 H 1.09007 * 110.66800 * 278.15643 * 22 4 2 37 37 H 1.08998 * 110.66729 * 41.28828 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.6121 -2.1143 -1.1942 6 6 2.7479 -2.9122 -1.8610 7 6 3.8273 -1.8624 -2.2114 8 1 3.7300 -1.5404 -3.2482 9 6 5.2072 -2.4078 -1.9480 10 7 5.6234 -2.8284 -0.7959 11 6 6.8476 -3.2795 -0.7217 12 6 7.5322 -3.2241 -1.9254 13 6 8.8537 -3.6316 -2.1461 14 1 9.2888 -3.5432 -3.1306 15 6 9.6113 -4.1537 -1.0899 16 7 9.0843 -4.2602 0.1032 17 14 11.3737 -4.6979 -1.3845 18 1 11.7293 -4.4745 -2.8089 19 1 12.2865 -3.9103 -0.5175 20 1 11.5069 -6.1412 -1.0611 21 16 6.4356 -2.5479 -3.1277 22 6 3.5043 -0.6970 -1.2428 23 1 -0.3632 0.5972 0.8364 24 1 -0.3634 -1.0228 0.0990 25 1 -0.3633 0.4258 -0.9354 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.4706 -2.4561 -0.1689 31 1 0.6891 -2.2382 -1.7605 32 1 3.1495 -3.6506 -1.1670 33 1 2.3862 -3.4014 -2.7654 34 1 7.2853 -3.6558 0.1912 35 1 9.6089 -4.6221 0.8345 36 1 3.8805 0.2469 -1.6376 37 1 3.9175 -0.8933 -0.2534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:49 Heat of formation + Delta-G solvation = 2.625072 kcal Electronic energy + Delta-G solvation = -17877.845532 eV Core-core repulsion = 15165.894123 eV Total energy + Delta-G solvation = -2711.951409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49171 -39.17567 -36.24258 -35.29211 -31.76797 -30.35389 -30.18262 -27.88810 -26.54915 -24.83892 -23.09832 -22.14567 -20.91996 -20.53977 -18.60181 -18.34168 -17.14480 -16.80728 -16.32174 -15.52927 -15.25018 -14.97792 -14.60925 -14.22808 -14.20205 -14.06082 -13.44986 -13.27793 -13.22716 -13.11436 -12.97619 -12.92254 -12.31336 -12.24885 -12.13164 -11.87965 -11.78652 -11.70139 -11.61221 -11.53454 -11.41951 -9.93952 -9.88744 -9.41253 -9.15532 -8.79127 -6.55017 0.54117 1.21166 1.40369 1.49732 1.57222 1.66312 2.12921 2.48445 2.99016 3.07493 3.69435 3.85881 3.98703 4.13957 4.20026 4.30155 4.36545 4.43092 4.57353 4.72121 4.82728 4.84292 4.89848 4.92112 4.96279 4.98060 5.03994 5.15913 5.19915 5.26199 5.38548 5.39492 5.50663 5.80935 5.90820 6.15889 6.20993 6.42651 6.59044 7.81758 8.05444 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040149 B = 0.004246 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.240449 B = 6592.446495 C = 6778.185219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 C -0.141 4.141 4 N -0.510 5.510 5 C 0.047 3.953 6 C -0.114 4.114 7 C 0.017 3.983 8 H 0.089 0.911 9 C -0.110 4.110 10 N -0.442 5.442 11 C -0.182 4.182 12 C -0.016 4.016 13 C -0.400 4.400 14 H 0.096 0.904 15 C 0.024 3.976 16 N -0.794 5.794 17 Si 1.014 2.986 18 H -0.250 1.250 19 H -0.260 1.260 20 H -0.259 1.259 21 S -0.042 6.042 22 C 0.062 3.938 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.300 0.700 36 H 0.078 0.922 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 4.631 -1.100 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 C -0.199 4.199 4 N -0.235 5.235 5 C -0.080 4.080 6 C -0.154 4.154 7 C -0.006 4.006 8 H 0.107 0.893 9 C -0.380 4.380 10 N -0.154 5.154 11 C -0.334 4.334 12 C -0.138 4.138 13 C -0.437 4.437 14 H 0.114 0.886 15 C -0.196 4.196 16 N -0.418 5.418 17 Si 0.832 3.168 18 H -0.173 1.173 19 H -0.184 1.184 20 H -0.184 1.184 21 S 0.209 5.791 22 C -0.067 4.067 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.193 5.153 -1.868 10.703 hybrid contribution 1.613 -1.126 1.702 2.602 sum -7.580 4.027 -0.165 8.585 Atomic orbital electron populations 1.21771 0.92256 1.02171 1.02952 1.21941 0.97313 0.95567 0.90057 1.21824 1.00296 0.94756 1.02981 1.64929 1.07788 1.12786 1.38027 1.22807 0.98491 0.87385 0.99358 1.22408 0.94657 0.97442 1.00879 1.20177 0.86767 0.94424 0.99232 0.89264 1.25534 1.01114 1.20140 0.91258 1.65302 1.16121 1.08838 1.25137 1.22950 0.90059 1.19665 1.00701 1.23661 0.98059 0.98326 0.93736 1.19497 0.94360 1.31610 0.98185 0.88564 1.27241 1.06127 0.93064 0.93201 1.69539 1.39596 1.30174 1.02536 0.84665 0.72962 0.78787 0.80397 1.17300 1.18391 1.18366 1.82746 1.09809 1.67712 1.18796 1.23007 0.88322 0.97903 0.97450 0.90773 0.92739 0.91435 0.95789 0.90630 0.94187 0.91314 0.94357 0.88329 0.93581 0.89901 0.80541 0.88823 0.90395 0.95596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.05 71.98 0.65 -1.95 16 2 C 0.06 1.52 2.36 44.92 0.11 1.63 16 3 C -0.14 -3.24 9.03 71.98 0.65 -2.59 16 4 N -0.51 -15.07 5.11 -857.86 -4.38 -19.46 16 5 C 0.05 1.36 5.58 86.45 0.48 1.84 16 6 C -0.11 -3.91 6.50 31.47 0.20 -3.71 16 7 C 0.02 0.65 3.54 -10.33 -0.04 0.61 16 8 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 9 C -0.11 -5.26 5.97 88.45 0.53 -4.73 16 10 N -0.44 -24.00 9.98 -188.21 -1.88 -25.88 16 11 C -0.18 -10.48 10.55 84.95 0.90 -9.58 16 12 C -0.02 -0.90 6.30 22.79 0.14 -0.76 16 13 C -0.40 -20.61 9.42 23.15 0.22 -20.39 16 14 H 0.10 4.61 7.85 -2.91 -0.02 4.59 16 15 C 0.02 1.11 5.50 85.28 0.47 1.58 16 16 N -0.79 -39.52 10.18 21.86 0.22 -39.30 16 17 Si 1.01 34.63 29.56 68.60 2.03 36.66 16 18 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 19 H -0.26 -8.46 7.11 99.48 0.71 -7.76 16 20 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 21 S -0.04 -2.01 23.13 -56.49 -1.31 -3.31 16 22 C 0.06 2.24 4.81 86.65 0.42 2.66 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.04 7.44 -2.39 -0.02 1.02 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.02 0.69 7.98 -2.39 -0.02 0.68 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.04 6.92 -2.38 -0.02 1.03 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.11 7.62 -2.39 -0.02 1.09 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 1.84 7.67 -2.39 -0.02 1.82 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.18 10.63 5.36 -2.91 -0.02 10.61 16 35 H 0.30 13.10 8.30 -92.71 -0.77 12.33 16 36 H 0.08 2.70 7.66 -2.38 -0.02 2.69 16 37 H 0.03 1.08 7.67 -2.39 -0.02 1.06 16 Total: -1.00 -59.98 309.36 0.46 -59.52 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.05 Total: 27.16 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.73 Total: -35.39 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -6.04 Total: -84.63 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -1.31 Total: -3.31 kcal Total: -59.98 0.46 -59.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.143 kcal (2) G-P(sol) polarization free energy of solvation -59.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds