Wall clock time and date at job start Mon Mar 30 2020 07:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47425 * 2 1 4 4 N 1.46906 * 109.47181 * 119.99758 * 2 1 3 5 5 C 1.47897 * 110.99555 * 59.87257 * 4 2 1 6 6 C 1.54000 * 107.05672 * 145.84575 * 5 4 2 7 7 C 1.54598 * 105.22213 * 358.72428 * 6 5 4 8 8 H 1.09003 * 110.72246 * 96.45403 * 7 6 5 9 9 C 1.50709 * 110.72231 * 219.73162 * 7 6 5 10 10 N 1.29522 * 124.56060 * 58.57487 * 9 7 6 11 11 C 1.30669 * 117.63342 * 179.97438 * 10 9 7 12 12 C 1.38587 * 113.54814 * 0.02562 * 11 10 9 13 13 C 1.40041 * 126.25504 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00342 * 180.02562 * 13 12 11 15 15 C 1.40076 * 119.99806 * 0.02562 * 13 12 11 16 16 N 1.30863 * 120.00154 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00178 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47287 * 89.99584 * 17 15 13 19 19 H 1.48491 * 109.47170 * 209.99823 * 17 15 13 20 20 H 1.48501 * 109.46857 * 329.99781 * 17 15 13 21 21 S 1.70884 * 124.56128 * 238.27085 * 9 7 6 22 22 C 1.48533 * 111.00245 * 177.27206 * 4 2 1 23 23 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47567 * 300.00076 * 1 2 3 25 25 H 1.08996 * 109.47191 * 60.00104 * 1 2 3 26 26 H 1.09001 * 109.47567 * 239.99924 * 2 1 3 27 27 H 1.08995 * 109.47722 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47249 * 300.00447 * 3 2 1 29 29 H 1.09001 * 109.46810 * 59.99460 * 3 2 1 30 30 H 1.09000 * 109.91881 * 26.49521 * 5 4 2 31 31 H 1.09002 * 110.08496 * 265.28456 * 5 4 2 32 32 H 1.09002 * 110.31026 * 117.69182 * 6 5 4 33 33 H 1.09000 * 110.30915 * 239.76211 * 6 5 4 34 34 H 1.07997 * 123.22399 * 179.97438 * 11 10 9 35 35 H 0.97003 * 120.00351 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.66452 * 318.71648 * 22 4 2 37 37 H 1.08995 * 110.66642 * 81.67547 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5429 -2.0920 1.2352 6 6 2.6570 -2.9323 1.8865 7 6 3.7980 -1.9326 2.1842 8 1 3.7481 -1.5866 3.2167 9 6 5.1402 -2.5529 1.8924 10 7 5.4983 -3.0204 0.7388 11 6 6.6974 -3.5295 0.6369 12 6 7.4192 -3.4871 1.8192 13 6 8.7245 -3.9572 2.0100 14 1 9.1925 -3.8731 2.9796 15 6 9.4232 -4.5364 0.9430 16 7 8.8561 -4.6387 -0.2319 17 14 11.1641 -5.1641 1.1975 18 1 11.1206 -6.5879 1.6170 19 1 11.9238 -5.0454 -0.0729 20 1 11.8319 -4.3579 2.2507 21 16 6.3970 -2.7273 3.0370 22 6 3.5029 -0.7697 1.2013 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.3550 -2.4463 0.2216 31 1 0.6307 -2.1618 1.8278 32 1 2.2986 -3.3838 2.8116 33 1 3.0004 -3.7042 1.1978 34 1 7.0882 -3.9442 -0.2805 35 1 9.3398 -5.0401 -0.9708 36 1 3.8771 -1.0055 0.2050 37 1 3.9363 0.1628 1.5628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:52 Heat of formation + Delta-G solvation = 18.646106 kcal Electronic energy + Delta-G solvation = -17872.855861 eV Core-core repulsion = 15161.599175 eV Total energy + Delta-G solvation = -2711.256685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.06515 -37.35763 -34.62899 -33.79274 -30.11365 -28.94659 -28.66923 -26.79527 -24.76843 -23.04108 -21.76410 -20.49667 -19.70775 -18.72759 -16.83323 -16.51373 -15.80230 -15.30220 -14.72554 -14.31622 -13.70307 -13.57832 -12.92286 -12.80918 -12.66951 -12.41925 -12.12436 -12.02009 -11.90071 -11.57488 -11.53528 -11.33345 -11.05495 -10.87668 -10.77931 -10.65125 -10.53219 -10.25540 -10.09160 -9.71998 -9.59543 -8.13841 -7.96442 -7.92175 -7.20507 -6.99571 -4.59267 2.39094 2.87754 2.92984 3.00554 3.19731 3.60455 3.72557 4.23400 4.36300 4.95814 5.02478 5.07185 5.19822 5.41126 5.45038 5.57269 5.67626 5.78982 5.84597 5.87580 5.93941 5.95456 6.03972 6.16983 6.24106 6.28153 6.36104 6.47140 6.60360 6.68024 6.77846 7.14826 7.23198 7.37297 7.43633 7.77047 8.12433 8.34186 8.63864 9.79794 9.81459 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.004238 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.915742 B = 6605.737988 C = 6785.582561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 C -0.143 4.143 4 N -0.516 5.516 5 C 0.042 3.958 6 C -0.119 4.119 7 C 0.025 3.975 8 H 0.076 0.924 9 C -0.120 4.120 10 N -0.421 5.421 11 C -0.141 4.141 12 C 0.015 3.985 13 C -0.376 4.376 14 H 0.087 0.913 15 C 0.064 3.936 16 N -0.767 5.767 17 Si 0.935 3.065 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.258 1.258 21 S -0.061 6.061 22 C 0.052 3.948 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.195 0.805 35 H 0.289 0.711 36 H 0.055 0.945 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 4.583 0.424 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 C -0.201 4.201 4 N -0.241 5.241 5 C -0.086 4.086 6 C -0.158 4.158 7 C 0.002 3.998 8 H 0.094 0.906 9 C -0.389 4.389 10 N -0.133 5.133 11 C -0.295 4.295 12 C -0.107 4.107 13 C -0.413 4.413 14 H 0.105 0.895 15 C -0.158 4.158 16 N -0.391 5.391 17 Si 0.758 3.242 18 H -0.189 1.189 19 H -0.196 1.196 20 H -0.182 1.182 21 S 0.190 5.810 22 C -0.077 4.077 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.211 0.789 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.338 5.154 1.213 9.877 hybrid contribution 1.405 -1.126 -1.445 2.308 sum -6.933 4.028 -0.232 8.021 Atomic orbital electron populations 1.21838 0.94681 1.01774 1.01715 1.21777 0.95374 0.95424 0.91690 1.21818 1.01377 0.95264 1.01600 1.64827 1.08280 1.14129 1.36897 1.22780 0.98310 0.88215 0.99310 1.22466 0.94423 0.98296 1.00616 1.19984 0.88782 0.93020 0.98048 0.90580 1.24735 1.00352 1.21153 0.92677 1.65307 1.17774 1.07383 1.22823 1.23092 0.89478 1.15976 1.00951 1.23311 0.97170 0.97211 0.92976 1.19044 0.95787 1.28973 0.97473 0.89515 1.26123 1.01325 0.94315 0.94077 1.69474 1.37623 1.30297 1.01698 0.85854 0.79261 0.79873 0.79259 1.18918 1.19636 1.18160 1.83002 1.12694 1.64719 1.20583 1.23247 0.86578 0.98345 0.99524 0.92790 0.91979 0.92654 0.94191 0.92490 0.92672 0.91987 0.94205 0.91104 0.91856 0.90709 0.78908 0.89938 0.92690 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.09 37.15 0.34 -1.25 16 2 C 0.07 0.90 2.35 -67.71 -0.16 0.74 16 3 C -0.14 -1.75 9.11 37.16 0.34 -1.41 16 4 N -0.52 -8.02 5.11 -222.40 -1.14 -9.16 16 5 C 0.04 0.64 5.40 -2.75 -0.01 0.62 16 6 C -0.12 -2.08 6.49 -25.37 -0.16 -2.24 16 7 C 0.02 0.48 3.54 -89.82 -0.32 0.16 16 8 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 9 C -0.12 -2.84 5.97 -13.25 -0.08 -2.92 16 10 N -0.42 -10.99 9.99 -10.84 -0.11 -11.09 16 11 C -0.14 -3.88 10.55 -17.92 -0.19 -4.07 16 12 C 0.01 0.40 6.30 -38.78 -0.24 0.15 16 13 C -0.38 -9.52 9.42 -38.22 -0.36 -9.88 16 14 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 15 C 0.06 1.51 5.50 -17.28 -0.09 1.41 16 16 N -0.77 -18.64 10.18 55.56 0.57 -18.08 16 17 Si 0.93 17.28 29.56 -169.99 -5.03 12.25 16 18 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 21 S -0.06 -1.45 23.13 -107.50 -2.49 -3.93 16 22 C 0.05 0.93 4.97 -1.81 -0.01 0.92 16 23 H 0.05 0.60 7.05 -51.93 -0.37 0.23 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 27 H 0.06 0.75 7.00 -51.93 -0.36 0.39 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.60 7.52 -51.93 -0.39 0.21 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.48 7.67 -51.93 -0.40 1.08 16 34 H 0.19 5.48 5.36 -52.49 -0.28 5.19 16 35 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 36 H 0.05 1.11 7.64 -51.93 -0.40 0.72 16 37 H 0.07 1.29 7.66 -51.93 -0.40 0.90 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -26.90 309.02 -10.01 -36.91 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.51 Total: 6.20 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.96 Total: -17.76 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.68 Total: -38.33 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.49 Total: -3.93 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.90 -10.01 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.554 kcal (2) G-P(sol) polarization free energy of solvation -26.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds