Wall clock time and date at job start Mon Mar 30 2020 07:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47425 * 2 1 4 4 N 1.46906 * 109.47181 * 119.99758 * 2 1 3 5 5 C 1.47897 * 110.99555 * 59.87257 * 4 2 1 6 6 C 1.54000 * 107.05672 * 145.84575 * 5 4 2 7 7 C 1.54598 * 105.22213 * 358.72428 * 6 5 4 8 8 H 1.09003 * 110.72246 * 96.45403 * 7 6 5 9 9 C 1.50709 * 110.72231 * 219.73162 * 7 6 5 10 10 N 1.29522 * 124.56060 * 58.57487 * 9 7 6 11 11 C 1.30669 * 117.63342 * 179.97438 * 10 9 7 12 12 C 1.38587 * 113.54814 * 0.02562 * 11 10 9 13 13 C 1.40041 * 126.25504 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00342 * 180.02562 * 13 12 11 15 15 C 1.40076 * 119.99806 * 0.02562 * 13 12 11 16 16 N 1.30863 * 120.00154 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00178 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47287 * 89.99584 * 17 15 13 19 19 H 1.48491 * 109.47170 * 209.99823 * 17 15 13 20 20 H 1.48501 * 109.46857 * 329.99781 * 17 15 13 21 21 S 1.70884 * 124.56128 * 238.27085 * 9 7 6 22 22 C 1.48533 * 111.00245 * 177.27206 * 4 2 1 23 23 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47567 * 300.00076 * 1 2 3 25 25 H 1.08996 * 109.47191 * 60.00104 * 1 2 3 26 26 H 1.09001 * 109.47567 * 239.99924 * 2 1 3 27 27 H 1.08995 * 109.47722 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47249 * 300.00447 * 3 2 1 29 29 H 1.09001 * 109.46810 * 59.99460 * 3 2 1 30 30 H 1.09000 * 109.91881 * 26.49521 * 5 4 2 31 31 H 1.09002 * 110.08496 * 265.28456 * 5 4 2 32 32 H 1.09002 * 110.31026 * 117.69182 * 6 5 4 33 33 H 1.09000 * 110.30915 * 239.76211 * 6 5 4 34 34 H 1.07997 * 123.22399 * 179.97438 * 11 10 9 35 35 H 0.97003 * 120.00351 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.66452 * 318.71648 * 22 4 2 37 37 H 1.08995 * 110.66642 * 81.67547 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5429 -2.0920 1.2352 6 6 2.6570 -2.9323 1.8865 7 6 3.7980 -1.9326 2.1842 8 1 3.7481 -1.5866 3.2167 9 6 5.1402 -2.5529 1.8924 10 7 5.4983 -3.0204 0.7388 11 6 6.6974 -3.5295 0.6369 12 6 7.4192 -3.4871 1.8192 13 6 8.7245 -3.9572 2.0100 14 1 9.1925 -3.8731 2.9796 15 6 9.4232 -4.5364 0.9430 16 7 8.8561 -4.6387 -0.2319 17 14 11.1641 -5.1641 1.1975 18 1 11.1206 -6.5879 1.6170 19 1 11.9238 -5.0454 -0.0729 20 1 11.8319 -4.3579 2.2507 21 16 6.3970 -2.7273 3.0370 22 6 3.5029 -0.7697 1.2013 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.3550 -2.4463 0.2216 31 1 0.6307 -2.1618 1.8278 32 1 2.2986 -3.3838 2.8116 33 1 3.0004 -3.7042 1.1978 34 1 7.0882 -3.9442 -0.2805 35 1 9.3398 -5.0401 -0.9708 36 1 3.8771 -1.0055 0.2050 37 1 3.9363 0.1628 1.5628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:51 Heat of formation + Delta-G solvation = 2.675764 kcal Electronic energy + Delta-G solvation = -17873.548387 eV Core-core repulsion = 15161.599175 eV Total energy + Delta-G solvation = -2711.949211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48513 -39.17704 -36.24256 -35.28838 -31.75996 -30.34598 -30.20225 -27.88642 -26.54230 -24.83498 -23.10627 -22.16054 -20.91309 -20.53304 -18.59793 -18.33601 -17.14230 -16.81517 -16.32371 -15.55157 -15.25097 -14.95690 -14.60868 -14.22568 -14.20451 -14.05703 -13.44957 -13.26988 -13.21597 -13.10252 -12.98103 -12.93362 -12.31429 -12.26066 -12.13533 -11.89810 -11.78364 -11.69556 -11.61146 -11.53633 -11.40709 -9.93953 -9.88784 -9.40987 -9.15575 -8.78955 -6.54978 0.54460 1.21127 1.40206 1.50701 1.56149 1.66236 2.12940 2.48596 2.98751 3.07569 3.69834 3.85299 3.98289 4.14541 4.20337 4.29878 4.36298 4.43073 4.56963 4.72157 4.82698 4.84034 4.89676 4.91947 4.96347 4.97979 5.04249 5.15876 5.20056 5.26466 5.38354 5.39220 5.50611 5.80914 5.90824 6.15690 6.20806 6.42515 6.59081 7.81858 8.05392 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.004238 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.915742 B = 6605.737988 C = 6785.582561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 C -0.140 4.140 4 N -0.510 5.510 5 C 0.048 3.952 6 C -0.114 4.114 7 C 0.017 3.983 8 H 0.089 0.911 9 C -0.110 4.110 10 N -0.442 5.442 11 C -0.182 4.182 12 C -0.016 4.016 13 C -0.401 4.401 14 H 0.097 0.903 15 C 0.024 3.976 16 N -0.794 5.794 17 Si 1.014 2.986 18 H -0.256 1.256 19 H -0.261 1.261 20 H -0.251 1.251 21 S -0.042 6.042 22 C 0.062 3.938 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.178 0.822 35 H 0.300 0.700 36 H 0.025 0.975 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 5.043 1.233 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 C -0.197 4.197 4 N -0.235 5.235 5 C -0.080 4.080 6 C -0.154 4.154 7 C -0.006 4.006 8 H 0.107 0.893 9 C -0.381 4.381 10 N -0.154 5.154 11 C -0.334 4.334 12 C -0.138 4.138 13 C -0.437 4.437 14 H 0.115 0.885 15 C -0.196 4.196 16 N -0.418 5.418 17 Si 0.831 3.169 18 H -0.181 1.181 19 H -0.185 1.185 20 H -0.174 1.174 21 S 0.209 5.791 22 C -0.067 4.067 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.887 5.614 2.003 10.701 hybrid contribution 1.505 -1.241 -1.712 2.595 sum -7.383 4.373 0.291 8.585 Atomic orbital electron populations 1.21792 0.92295 1.02275 1.02935 1.21941 0.97248 0.95660 0.90047 1.21801 1.00308 0.94654 1.02942 1.64908 1.06178 1.14374 1.38058 1.22800 0.98254 0.87467 0.99508 1.22409 0.94414 0.97523 1.01051 1.20194 0.87269 0.94020 0.99083 0.89266 1.25531 1.01574 1.19065 0.91910 1.65297 1.17616 1.08401 1.24082 1.22948 0.90649 1.18561 1.01232 1.23657 0.98293 0.98119 0.93697 1.19473 0.95805 1.29694 0.98725 0.88540 1.27240 1.05666 0.93574 0.93129 1.69532 1.39569 1.29994 1.02731 0.84713 0.73155 0.79334 0.79649 1.18062 1.18529 1.17414 1.82742 1.12119 1.64438 1.19760 1.23033 0.88566 0.97726 0.97384 0.92661 0.91371 0.90838 0.95841 0.94159 0.90670 0.91310 0.94343 0.88323 0.89917 0.93573 0.80538 0.88811 0.95650 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.09 71.98 0.65 -1.98 16 2 C 0.06 1.52 2.35 44.91 0.11 1.63 16 3 C -0.14 -3.18 9.11 71.98 0.66 -2.52 16 4 N -0.51 -15.08 5.11 -857.53 -4.38 -19.46 16 5 C 0.05 1.36 5.40 86.45 0.47 1.82 16 6 C -0.11 -3.92 6.49 31.48 0.20 -3.71 16 7 C 0.02 0.66 3.54 -10.28 -0.04 0.63 16 8 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 9 C -0.11 -5.28 5.97 88.45 0.53 -4.75 16 10 N -0.44 -24.01 9.99 -188.21 -1.88 -25.89 16 11 C -0.18 -10.49 10.55 84.95 0.90 -9.60 16 12 C -0.02 -0.89 6.30 22.79 0.14 -0.75 16 13 C -0.40 -20.63 9.42 23.15 0.22 -20.41 16 14 H 0.10 4.61 7.85 -2.91 -0.02 4.58 16 15 C 0.02 1.13 5.50 85.28 0.47 1.60 16 16 N -0.79 -39.52 10.18 21.86 0.22 -39.30 16 17 Si 1.01 34.60 29.56 68.60 2.03 36.63 16 18 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 19 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 20 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 21 S -0.04 -2.00 23.13 -56.49 -1.31 -3.31 16 22 C 0.06 2.23 4.97 86.70 0.43 2.66 16 23 H 0.05 1.06 7.05 -2.39 -0.02 1.05 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 27 H 0.04 1.04 7.00 -2.39 -0.02 1.02 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.11 7.52 -2.39 -0.02 1.10 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.84 7.67 -2.39 -0.02 1.82 16 34 H 0.18 10.63 5.36 -2.91 -0.02 10.62 16 35 H 0.30 13.14 8.30 -92.71 -0.77 12.38 16 36 H 0.03 1.06 7.64 -2.39 -0.02 1.04 16 37 H 0.08 2.70 7.66 -2.39 -0.02 2.69 16 Total: -1.00 -59.98 309.02 0.47 -59.51 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 1.05 Total: 27.22 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 4.74 Total: -35.39 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -6.04 Total: -84.65 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 2.03 Total: 36.63 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -1.31 Total: -3.31 kcal Total: -59.98 0.47 -59.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.183 kcal (2) G-P(sol) polarization free energy of solvation -59.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds