Wall clock time and date at job start Mon Mar 30 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47112 * 2 1 4 4 C 1.33722 * 122.28990 * 264.32153 * 3 2 1 5 5 N 1.39617 * 125.22648 * 0.02562 * 4 3 2 6 6 S 1.75761 * 109.54380 * 179.89189 * 4 3 2 7 7 C 1.75659 * 91.13309 * 0.29015 * 6 4 3 8 8 C 1.34660 * 110.07723 * 359.86299 * 7 6 4 9 9 C 1.52347 * 121.91980 * 179.90242 * 8 7 6 10 10 H 1.09006 * 109.71476 * 103.06548 * 9 8 7 11 11 C 1.50697 * 109.72045 * 223.71071 * 9 8 7 12 12 H 1.08001 * 119.99594 * 5.89954 * 11 9 8 13 13 C 1.37873 * 120.00166 * 185.90287 * 11 9 8 14 14 N 1.31517 * 120.00239 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00036 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47019 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47098 * 119.99802 * 15 13 11 18 18 H 1.48499 * 109.47209 * 239.99890 * 15 13 11 19 19 C 1.53148 * 108.20849 * 343.39241 * 9 8 7 20 20 N 1.46987 * 109.46630 * 50.37143 * 19 9 8 21 21 C 1.46907 * 110.99593 * 164.28521 * 20 19 9 22 22 C 1.47097 * 110.88460 * 288.15322 * 20 19 9 23 23 H 1.08995 * 109.47569 * 59.99940 * 1 2 3 24 24 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47096 * 299.99610 * 1 2 3 26 26 H 1.09004 * 109.47390 * 120.00624 * 2 1 3 27 27 H 1.09001 * 109.47096 * 240.00390 * 2 1 3 28 28 H 0.96997 * 120.00318 * 0.02562 * 5 4 3 29 29 H 0.97000 * 119.99886 * 179.97438 * 5 4 3 30 30 H 0.96999 * 119.99941 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.46662 * 290.37555 * 19 9 8 32 32 H 1.08994 * 109.47219 * 170.37501 * 19 9 8 33 33 H 1.08998 * 109.46521 * 187.75681 * 21 20 19 34 34 H 1.08999 * 109.46930 * 307.75534 * 21 20 19 35 35 H 1.09003 * 109.46801 * 67.75637 * 21 20 19 36 36 H 1.08998 * 109.62851 * 291.36797 * 22 20 19 37 37 H 1.09005 * 109.62245 * 170.80142 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3759 2.0570 -1.1249 5 7 2.3178 1.5113 -2.4086 6 16 2.9082 3.6871 -0.7393 7 6 2.6371 3.4079 0.9736 8 6 2.1759 2.1583 1.1710 9 6 1.8514 1.6298 2.5626 10 1 0.7719 1.6304 2.7137 11 6 2.3857 0.2286 2.7117 12 1 2.9890 -0.2054 1.9282 13 6 2.1042 -0.4992 3.8484 14 7 1.3698 0.0295 4.8027 15 14 2.7658 -2.2364 4.0329 16 1 3.5581 -2.5947 2.8291 17 1 3.6334 -2.3104 5.2359 18 1 1.6326 -3.1846 4.1807 19 6 2.5174 2.5488 3.5908 20 7 2.1775 3.9470 3.2908 21 6 2.4727 4.8180 4.4365 22 6 2.8779 4.4095 2.0828 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.0083 0.6007 -2.5350 29 1 2.5861 2.0429 -3.1743 30 1 1.1715 -0.4827 5.6022 31 1 3.5989 2.4203 3.5463 32 1 2.1621 2.2946 4.5893 33 1 2.0867 5.8184 4.2412 34 1 1.9993 4.4141 5.3314 35 1 3.5512 4.8674 4.5867 36 1 3.9465 4.4824 2.2845 37 1 2.4912 5.3844 1.7861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:11 Heat of formation + Delta-G solvation = 34.877263 kcal Electronic energy + Delta-G solvation = -18945.191885 eV Core-core repulsion = 16234.639036 eV Total energy + Delta-G solvation = -2710.552849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.87022 -36.64645 -33.78414 -32.86693 -31.69806 -29.64083 -28.44378 -25.49347 -24.85600 -23.25719 -21.61628 -21.51705 -19.08770 -17.62665 -17.29706 -16.29400 -15.46387 -14.81001 -14.61014 -14.23316 -13.90060 -13.73020 -13.20073 -13.05581 -12.45881 -12.30350 -12.19007 -11.90647 -11.33499 -11.24911 -11.17825 -11.06544 -10.94633 -10.66500 -10.46063 -10.34707 -10.03846 -9.69909 -9.48361 -9.24189 -8.73189 -8.44443 -7.55118 -7.32984 -6.64506 -6.05574 -4.07352 2.02035 2.05269 2.69835 3.27007 3.36186 3.39126 3.75587 4.33594 4.40602 4.84640 5.29738 5.62618 5.80543 5.87712 5.93385 5.98772 6.10511 6.13469 6.19294 6.33511 6.35787 6.50151 6.65645 6.71142 6.88400 6.90428 7.04494 7.21038 7.29578 7.42565 7.66020 7.68968 7.75956 7.91200 8.01008 8.03330 8.06880 8.42846 8.93246 9.53312 11.02047 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.009898 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.314877 B = 2828.139242 C = 4222.549778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C -0.170 4.170 4 C 0.098 3.902 5 N -0.856 5.856 6 S 0.031 5.969 7 C -0.251 4.251 8 C 0.003 3.997 9 C 0.112 3.888 10 H 0.055 0.945 11 C -0.505 4.505 12 H 0.070 0.930 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.283 1.283 19 C 0.066 3.934 20 N -0.542 5.542 21 C 0.030 3.970 22 C 0.148 3.852 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.124 0.876 27 H 0.035 0.965 28 H 0.400 0.600 29 H 0.393 0.607 30 H 0.261 0.739 31 H 0.016 0.984 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.016 0.984 36 H 0.031 0.969 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 4.807 -8.315 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 C -0.186 4.186 4 C -0.119 4.119 5 N -0.402 5.402 6 S 0.288 5.712 7 C -0.368 4.368 8 C -0.008 4.008 9 C 0.092 3.908 10 H 0.073 0.927 11 C -0.543 4.543 12 H 0.088 0.912 13 C -0.137 4.137 14 N -0.523 5.523 15 Si 0.714 3.286 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.209 1.209 19 C -0.060 4.060 20 N -0.267 5.267 21 C -0.119 4.119 22 C 0.018 3.982 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.053 0.947 28 H 0.231 0.769 29 H 0.220 0.780 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.524 6.045 -9.032 10.975 hybrid contribution 0.772 -2.159 0.646 2.382 sum 2.295 3.886 -8.386 9.523 Atomic orbital electron populations 1.21593 0.96275 1.00119 1.01098 1.20650 0.95143 0.92285 1.03594 1.18333 1.10937 0.99018 0.90325 1.21413 1.05295 0.96161 0.89069 1.41504 1.78130 1.17424 1.03124 1.83386 1.72418 1.11153 1.04230 1.23835 1.18995 1.00246 0.93703 1.19879 0.93187 0.90297 0.97440 1.17871 0.97297 0.92399 0.83283 0.92697 1.21098 1.32475 0.97700 1.03069 0.91237 1.24962 0.94932 0.97931 0.95886 1.69931 1.37526 1.37066 1.07802 0.86622 0.78849 0.84946 0.78209 1.19632 1.21087 1.20932 1.22442 0.97043 0.83721 1.02826 1.62281 1.57437 1.04645 1.02365 1.22304 0.98094 0.97091 0.94420 1.20342 0.95084 0.94750 0.87988 0.94794 0.93780 0.91961 0.85827 0.94664 0.76924 0.77980 0.92897 0.96517 0.88979 0.92547 0.91380 0.96596 0.95143 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.89 37.16 0.37 -2.05 16 2 C -0.08 -1.50 5.46 -27.89 -0.15 -1.66 16 3 C -0.17 -3.46 4.88 -105.88 -0.52 -3.97 16 4 C 0.10 1.74 7.56 -15.58 -0.12 1.62 16 5 N -0.86 -11.64 9.08 31.61 0.29 -11.35 16 6 S 0.03 0.53 23.31 -107.50 -2.51 -1.98 16 7 C -0.25 -5.16 6.42 -35.25 -0.23 -5.38 16 8 C 0.00 0.08 5.40 -104.74 -0.57 -0.49 16 9 C 0.11 2.77 2.34 -92.03 -0.22 2.56 16 10 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 11 C -0.51 -12.95 6.30 -34.44 -0.22 -13.16 16 12 H 0.07 1.80 5.81 -52.49 -0.30 1.49 16 13 C 0.07 1.70 5.35 -17.82 -0.10 1.60 16 14 N -0.89 -24.03 11.99 55.43 0.66 -23.37 16 15 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.07 1.57 4.55 -3.70 -0.02 1.55 16 20 N -0.54 -11.20 4.91 -243.61 -1.20 -12.39 16 21 C 0.03 0.51 9.62 60.07 0.58 1.09 16 22 C 0.15 2.84 5.82 -4.54 -0.03 2.81 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.12 2.73 3.98 -51.93 -0.21 2.53 16 27 H 0.03 0.59 6.82 -51.93 -0.35 0.24 16 28 H 0.40 4.97 7.44 -40.82 -0.30 4.67 16 29 H 0.39 4.33 8.96 -40.82 -0.37 3.96 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.02 0.41 8.02 -51.93 -0.42 -0.01 16 32 H 0.09 2.35 6.64 -51.93 -0.34 2.00 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 35 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 36 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -27.53 302.74 -9.64 -37.17 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.22 Total: 7.53 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.20 Total: -15.49 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.24 Total: -47.11 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.51 Total: -1.98 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.53 -9.64 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.045 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds