Wall clock time and date at job start Mon Mar 30 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47112 * 2 1 4 4 C 1.33722 * 122.28990 * 264.32153 * 3 2 1 5 5 N 1.39617 * 125.22648 * 0.02562 * 4 3 2 6 6 S 1.75761 * 109.54380 * 179.89189 * 4 3 2 7 7 C 1.75659 * 91.13309 * 0.29015 * 6 4 3 8 8 C 1.34660 * 110.07723 * 359.86299 * 7 6 4 9 9 C 1.52347 * 121.91980 * 179.90242 * 8 7 6 10 10 H 1.09006 * 109.71476 * 103.06548 * 9 8 7 11 11 C 1.50697 * 109.72045 * 223.71071 * 9 8 7 12 12 H 1.08001 * 119.99594 * 5.89954 * 11 9 8 13 13 C 1.37873 * 120.00166 * 185.90287 * 11 9 8 14 14 N 1.31517 * 120.00239 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00036 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47019 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47098 * 119.99802 * 15 13 11 18 18 H 1.48499 * 109.47209 * 239.99890 * 15 13 11 19 19 C 1.53148 * 108.20849 * 343.39241 * 9 8 7 20 20 N 1.46987 * 109.46630 * 50.37143 * 19 9 8 21 21 C 1.46907 * 110.99593 * 164.28521 * 20 19 9 22 22 C 1.47097 * 110.88460 * 288.15322 * 20 19 9 23 23 H 1.08995 * 109.47569 * 59.99940 * 1 2 3 24 24 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47096 * 299.99610 * 1 2 3 26 26 H 1.09004 * 109.47390 * 120.00624 * 2 1 3 27 27 H 1.09001 * 109.47096 * 240.00390 * 2 1 3 28 28 H 0.96997 * 120.00318 * 0.02562 * 5 4 3 29 29 H 0.97000 * 119.99886 * 179.97438 * 5 4 3 30 30 H 0.96999 * 119.99941 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.46662 * 290.37555 * 19 9 8 32 32 H 1.08994 * 109.47219 * 170.37501 * 19 9 8 33 33 H 1.08998 * 109.46521 * 187.75681 * 21 20 19 34 34 H 1.08999 * 109.46930 * 307.75534 * 21 20 19 35 35 H 1.09003 * 109.46801 * 67.75637 * 21 20 19 36 36 H 1.08998 * 109.62851 * 291.36797 * 22 20 19 37 37 H 1.09005 * 109.62245 * 170.80142 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3759 2.0570 -1.1249 5 7 2.3178 1.5113 -2.4086 6 16 2.9082 3.6871 -0.7393 7 6 2.6371 3.4079 0.9736 8 6 2.1759 2.1583 1.1710 9 6 1.8514 1.6298 2.5626 10 1 0.7719 1.6304 2.7137 11 6 2.3857 0.2286 2.7117 12 1 2.9890 -0.2054 1.9282 13 6 2.1042 -0.4992 3.8484 14 7 1.3698 0.0295 4.8027 15 14 2.7658 -2.2364 4.0329 16 1 3.5581 -2.5947 2.8291 17 1 3.6334 -2.3104 5.2359 18 1 1.6326 -3.1846 4.1807 19 6 2.5174 2.5488 3.5908 20 7 2.1775 3.9470 3.2908 21 6 2.4727 4.8180 4.4365 22 6 2.8779 4.4095 2.0828 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.0083 0.6007 -2.5350 29 1 2.5861 2.0429 -3.1743 30 1 1.1715 -0.4827 5.6022 31 1 3.5989 2.4203 3.5463 32 1 2.1621 2.2946 4.5893 33 1 2.0867 5.8184 4.2412 34 1 1.9993 4.4141 5.3314 35 1 3.5512 4.8674 4.5867 36 1 3.9465 4.4824 2.2845 37 1 2.4912 5.3844 1.7861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:11 Heat of formation + Delta-G solvation = 17.031550 kcal Electronic energy + Delta-G solvation = -18945.965733 eV Core-core repulsion = 16234.639036 eV Total energy + Delta-G solvation = -2711.326698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45232 -38.15715 -35.43168 -34.52027 -33.19669 -31.48635 -29.88744 -27.29690 -26.39512 -24.81997 -23.24706 -23.19214 -20.62515 -19.09804 -18.89309 -18.12152 -16.91376 -16.50564 -16.18002 -15.82735 -15.45773 -15.26785 -14.75677 -14.63258 -14.12273 -13.91977 -13.83436 -13.33965 -12.96255 -12.89365 -12.80916 -12.68275 -12.57851 -12.40291 -12.17904 -12.02616 -11.59020 -11.32255 -11.08382 -10.92539 -10.54252 -10.41570 -9.15575 -8.81860 -8.09534 -7.98499 -6.11962 0.52176 0.64740 1.18433 1.42263 1.45755 1.55513 2.16374 2.48391 3.13125 3.17119 3.39981 4.11548 4.34258 4.41381 4.45860 4.57421 4.61910 4.65335 4.70179 4.83504 4.86799 4.97915 5.01919 5.07999 5.21513 5.30296 5.49051 5.52339 5.61552 5.79168 5.81070 5.92279 6.10935 6.24648 6.41522 6.45836 6.53151 6.93204 6.96704 7.50504 9.02168 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.009898 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.314877 B = 2828.139242 C = 4222.549778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.208 4.208 4 C 0.110 3.890 5 N -0.836 5.836 6 S 0.101 5.899 7 C -0.277 4.277 8 C -0.026 4.026 9 C 0.116 3.884 10 H 0.010 0.990 11 C -0.503 4.503 12 H 0.066 0.934 13 C 0.019 3.981 14 N -0.917 5.917 15 Si 0.944 3.056 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.281 1.281 19 C 0.085 3.915 20 N -0.558 5.558 21 C 0.030 3.970 22 C 0.148 3.852 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.409 0.591 29 H 0.410 0.590 30 H 0.260 0.740 31 H -0.001 1.001 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.037 0.963 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 5.549 -10.862 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.112 4.112 3 C -0.224 4.224 4 C -0.110 4.110 5 N -0.383 5.383 6 S 0.358 5.642 7 C -0.395 4.395 8 C -0.038 4.038 9 C 0.095 3.905 10 H 0.028 0.972 11 C -0.541 4.541 12 H 0.084 0.916 13 C -0.180 4.180 14 N -0.556 5.556 15 Si 0.770 3.230 16 H -0.189 1.189 17 H -0.211 1.211 18 H -0.207 1.207 19 C -0.043 4.043 20 N -0.283 5.283 21 C -0.118 4.118 22 C 0.018 3.982 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.241 0.759 29 H 0.240 0.760 30 H 0.069 0.931 31 H 0.017 0.983 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.440 6.785 -11.622 13.677 hybrid contribution 0.487 -2.295 1.312 2.688 sum 2.928 4.491 -10.310 11.620 Atomic orbital electron populations 1.21507 0.95877 1.00717 1.00143 1.20490 0.95503 0.92132 1.03110 1.18304 1.13787 0.99697 0.90658 1.21565 1.03006 0.96624 0.89849 1.41518 1.76722 1.17994 1.02060 1.83039 1.71065 1.09612 1.00448 1.24175 1.18670 0.99992 0.96613 1.19761 0.95429 0.91777 0.96798 1.17594 0.94477 0.92624 0.85821 0.97230 1.21284 1.31671 0.98455 1.02691 0.91588 1.25635 0.95376 1.01282 0.95728 1.70061 1.38989 1.38314 1.08260 0.85709 0.78215 0.80957 0.78097 1.18881 1.21142 1.20716 1.22026 0.95347 0.85964 1.00981 1.62219 1.58235 1.03512 1.04295 1.22371 0.98847 0.97643 0.92939 1.20456 0.95370 0.95402 0.86928 0.92985 0.92384 0.95507 0.89149 0.92040 0.75919 0.76001 0.93082 0.98255 0.91796 0.89582 0.92161 0.95624 0.94546 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.89 71.98 0.71 -3.82 16 2 C -0.07 -2.81 5.46 29.85 0.16 -2.65 16 3 C -0.21 -8.35 4.88 -20.68 -0.10 -8.45 16 4 C 0.11 3.60 7.56 82.43 0.62 4.23 16 5 N -0.84 -19.46 9.08 -53.91 -0.49 -19.95 16 6 S 0.10 3.17 23.31 -56.49 -1.32 1.85 16 7 C -0.28 -11.12 6.42 25.08 0.16 -10.96 16 8 C -0.03 -1.18 5.40 -19.94 -0.11 -1.29 16 9 C 0.12 6.01 2.34 -11.71 -0.03 5.98 16 10 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 11 C -0.50 -26.90 6.30 25.60 0.16 -26.74 16 12 H 0.07 3.52 5.81 -2.91 -0.02 3.51 16 13 C 0.02 1.01 5.35 84.65 0.45 1.47 16 14 N -0.92 -52.28 11.99 21.45 0.26 -52.02 16 15 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 C 0.08 4.18 4.55 86.34 0.39 4.58 16 20 N -0.56 -23.24 4.91 -924.64 -4.54 -27.78 16 21 C 0.03 1.01 9.62 127.69 1.23 2.24 16 22 C 0.15 5.47 5.82 85.73 0.50 5.97 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 4.09 3.98 -2.38 -0.01 4.08 16 27 H 0.06 1.96 6.82 -2.39 -0.02 1.94 16 28 H 0.41 8.54 7.44 -92.71 -0.69 7.85 16 29 H 0.41 7.12 8.96 -92.71 -0.83 6.29 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.00 -0.04 8.02 -2.39 -0.02 -0.06 16 32 H 0.06 3.46 6.64 -2.39 -0.02 3.45 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 35 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 36 H 0.04 1.31 8.11 -2.39 -0.02 1.29 16 37 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -62.09 302.74 -0.33 -62.41 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.42 Total: 20.03 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.16 Total: -29.43 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -4.77 Total: -99.75 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.32 Total: 1.85 kcal Total: -62.09 -0.33 -62.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.446 kcal (2) G-P(sol) polarization free energy of solvation -62.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds