Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.89924 * 2 1 4 4 N 1.40093 * 108.20440 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.03816 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.30180 * 197.19727 * 5 4 3 7 7 C 1.53706 * 110.33967 * 75.02387 * 5 4 3 8 8 C 1.52942 * 112.49331 * 238.30185 * 7 5 4 9 9 C 1.55154 * 108.95765 * 30.09937 * 8 7 5 10 10 S 1.83400 * 110.34085 * 319.48102 * 5 4 3 11 11 C 1.34949 * 107.92221 * 359.97438 * 4 3 2 12 12 C 1.50703 * 126.12355 * 179.97438 * 11 4 3 13 13 C 1.35314 * 107.74826 * 0.23031 * 11 4 3 14 14 C 1.50703 * 126.03941 * 179.77505 * 13 11 4 15 15 C 1.50697 * 109.47330 * 89.99222 * 14 13 11 16 16 H 1.08000 * 120.00192 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99767 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00343 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46892 * 120.00266 * 19 17 15 22 22 H 1.48496 * 109.46932 * 240.00166 * 19 17 15 23 23 H 1.08996 * 109.47154 * 89.97182 * 1 2 3 24 24 H 1.09001 * 109.47360 * 209.97803 * 1 2 3 25 25 H 1.08999 * 109.46997 * 329.97768 * 1 2 3 26 26 H 1.09004 * 108.88904 * 359.09819 * 7 5 4 27 27 H 1.09001 * 108.88786 * 117.50627 * 7 5 4 28 28 H 1.09000 * 109.60682 * 150.03303 * 8 7 5 29 29 H 1.08994 * 109.60335 * 270.35646 * 8 7 5 30 30 H 1.09003 * 111.13123 * 76.47309 * 9 8 7 31 31 H 1.08999 * 111.13119 * 200.64689 * 9 8 7 32 32 H 1.09002 * 109.47152 * 90.00014 * 12 11 4 33 33 H 1.09001 * 109.46980 * 330.00114 * 12 11 4 34 34 H 1.09004 * 109.47113 * 210.00095 * 12 11 4 35 35 H 1.08995 * 109.46794 * 209.99695 * 14 13 11 36 36 H 1.09000 * 109.46926 * 329.98980 * 14 13 11 37 37 H 0.97006 * 120.00176 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7900 1.5006 -0.0013 6 1 5.6724 0.9369 -0.3039 7 6 5.0011 2.1172 1.3907 8 6 4.9950 3.6463 1.3605 9 6 4.0745 4.1239 0.2064 10 16 4.5301 2.9315 -1.1187 11 6 3.6142 -0.7155 -0.0004 12 6 4.8350 -1.5991 -0.0014 13 6 2.3271 -1.1331 -0.0048 14 6 1.8598 -2.5658 -0.0111 15 6 1.7010 -3.0486 1.4076 16 1 1.9164 -2.3843 2.2314 17 6 1.2796 -4.3380 1.6538 18 7 1.0168 -5.1469 0.6507 19 14 1.0820 -4.9363 3.4125 20 1 1.4376 -3.8415 4.3506 21 1 -0.3273 -5.3451 3.6408 22 1 1.9780 -6.0977 3.6438 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 4.2061 1.7741 2.0529 27 1 5.9578 1.7759 1.7864 28 1 4.6202 4.0294 2.3096 29 1 6.0076 4.0128 1.1925 30 1 3.0230 4.0277 0.4769 31 1 4.3108 5.1467 -0.0871 32 1 5.1303 -1.8119 1.0260 33 1 5.6507 -1.0912 -0.5161 34 1 4.6070 -2.5332 -0.5149 35 1 0.9023 -2.6334 -0.5273 36 1 2.5944 -3.1853 -0.5256 37 1 0.7207 -6.0543 0.8240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261336283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = 59.024330 kcal Electronic energy + Delta-G solvation = -18261.007864 eV Core-core repulsion = 15551.502110 eV Total energy + Delta-G solvation = -2709.505754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63913 -36.35134 -33.51611 -32.94752 -31.49063 -29.55369 -28.32657 -26.76724 -25.68490 -24.23148 -22.43810 -20.94997 -18.96603 -18.72370 -16.74085 -16.23427 -16.19525 -15.19265 -14.91508 -14.44289 -14.06872 -13.41513 -13.14071 -12.89365 -12.69265 -12.37704 -12.35727 -12.11143 -11.96655 -11.74415 -11.51987 -11.34885 -11.27945 -11.08821 -10.96494 -10.73474 -10.50351 -10.15368 -9.90298 -9.42338 -9.29601 -8.34212 -8.33625 -7.84584 -7.23936 -5.95283 -3.98121 1.55393 2.12722 2.64833 2.87239 3.31734 3.39616 3.43631 3.67476 4.27512 4.50527 4.52458 4.63672 4.84080 5.02749 5.25557 5.36879 5.39536 5.44161 5.54680 5.58427 5.61280 5.69219 5.89716 6.01711 6.06542 6.27453 6.37291 6.47927 6.60049 6.80147 7.02856 7.47644 7.61166 7.78910 7.87607 8.01715 8.47288 8.50386 9.07582 9.65145 11.13578 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.005123 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.449826 B = 5464.135490 C = 5619.799405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.076 3.924 3 N -0.298 5.298 4 N -0.381 5.381 5 C 0.220 3.780 6 H 0.129 0.871 7 C -0.142 4.142 8 C -0.118 4.118 9 C -0.068 4.068 10 S -0.265 6.265 11 C 0.054 3.946 12 C -0.079 4.079 13 C -0.172 4.172 14 C 0.087 3.913 15 C -0.501 4.501 16 H 0.053 0.947 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 14.849 0.130 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 N -0.120 5.120 4 N -0.167 5.167 5 C 0.006 3.994 6 H 0.146 0.854 7 C -0.182 4.182 8 C -0.157 4.157 9 C -0.216 4.216 10 S -0.037 6.037 11 C -0.070 4.070 12 C -0.137 4.137 13 C -0.182 4.182 14 C 0.049 3.951 15 C -0.540 4.540 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.536 5.536 19 Si 0.716 3.284 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.569 16.171 -1.138 18.337 hybrid contribution -0.211 -1.457 2.202 2.649 sum 8.358 14.714 1.064 16.956 Atomic orbital electron populations 1.20109 0.87270 1.03040 1.02112 1.22241 0.96642 0.90734 0.99475 1.77131 0.85712 1.22599 1.26579 1.48427 1.04156 1.03373 1.60766 1.23415 0.87878 0.92212 0.95927 0.85361 1.22508 1.04447 0.95558 0.95736 1.22337 1.00282 0.94257 0.98849 1.24359 1.03416 0.99649 0.94214 1.87877 1.89627 1.08399 1.17757 1.20737 0.97438 0.83431 1.05365 1.20300 0.92144 0.98527 1.02751 1.20573 0.90141 0.98622 1.08902 1.17654 0.96310 0.84201 0.96927 1.21154 1.44111 0.96659 0.92031 0.92910 1.24984 0.95750 0.96888 0.96693 1.69966 1.46562 1.06778 1.30260 0.86598 0.77716 0.78665 0.85412 1.19911 1.21041 1.21117 0.91438 0.89390 0.92212 0.89720 0.89428 0.89932 0.90327 0.88500 0.87683 0.90782 0.93037 0.89322 0.95579 0.95898 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.12 36.01 0.36 -0.85 16 2 C 0.08 1.61 7.22 -82.40 -0.59 1.01 16 3 N -0.30 -6.00 12.16 33.67 0.41 -5.59 16 4 N -0.38 -6.95 3.32 -52.97 -0.18 -7.13 16 5 C 0.22 3.10 4.10 -3.68 -0.02 3.09 16 6 H 0.13 1.58 6.80 -51.93 -0.35 1.23 16 7 C -0.14 -1.64 6.16 -26.39 -0.16 -1.80 16 8 C -0.12 -1.09 6.34 -25.62 -0.16 -1.26 16 9 C -0.07 -0.74 7.52 38.30 0.29 -0.45 16 10 S -0.26 -3.72 22.59 -107.50 -2.43 -6.15 16 11 C 0.05 1.08 6.93 -82.26 -0.57 0.51 16 12 C -0.08 -1.30 9.87 36.01 0.36 -0.94 16 13 C -0.17 -3.89 5.29 -105.05 -0.56 -4.45 16 14 C 0.09 2.24 4.92 -29.03 -0.14 2.10 16 15 C -0.50 -13.86 9.09 -34.44 -0.31 -14.17 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.09 1.71 7.94 -51.93 -0.41 1.30 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 34 H 0.09 1.55 7.14 -51.93 -0.37 1.18 16 35 H 0.03 0.71 7.94 -51.93 -0.41 0.29 16 36 H 0.02 0.61 7.14 -51.93 -0.37 0.24 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -31.61 318.24 -8.90 -40.51 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.61 Total: -1.65 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.61 Total: -15.70 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.97 Total: -38.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.43 Total: -6.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.61 -8.90 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261336283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.534 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds