Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.89924 * 2 1 4 4 N 1.40093 * 108.20440 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.03816 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.30180 * 197.19727 * 5 4 3 7 7 C 1.53706 * 110.33967 * 75.02387 * 5 4 3 8 8 C 1.52942 * 112.49331 * 238.30185 * 7 5 4 9 9 C 1.55154 * 108.95765 * 30.09937 * 8 7 5 10 10 S 1.83400 * 110.34085 * 319.48102 * 5 4 3 11 11 C 1.34949 * 107.92221 * 359.97438 * 4 3 2 12 12 C 1.50703 * 126.12355 * 179.97438 * 11 4 3 13 13 C 1.35314 * 107.74826 * 0.23031 * 11 4 3 14 14 C 1.50703 * 126.03941 * 179.77505 * 13 11 4 15 15 C 1.50697 * 109.47330 * 89.99222 * 14 13 11 16 16 H 1.08000 * 120.00192 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99767 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00343 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46892 * 120.00266 * 19 17 15 22 22 H 1.48496 * 109.46932 * 240.00166 * 19 17 15 23 23 H 1.08996 * 109.47154 * 89.97182 * 1 2 3 24 24 H 1.09001 * 109.47360 * 209.97803 * 1 2 3 25 25 H 1.08999 * 109.46997 * 329.97768 * 1 2 3 26 26 H 1.09004 * 108.88904 * 359.09819 * 7 5 4 27 27 H 1.09001 * 108.88786 * 117.50627 * 7 5 4 28 28 H 1.09000 * 109.60682 * 150.03303 * 8 7 5 29 29 H 1.08994 * 109.60335 * 270.35646 * 8 7 5 30 30 H 1.09003 * 111.13123 * 76.47309 * 9 8 7 31 31 H 1.08999 * 111.13119 * 200.64689 * 9 8 7 32 32 H 1.09002 * 109.47152 * 90.00014 * 12 11 4 33 33 H 1.09001 * 109.46980 * 330.00114 * 12 11 4 34 34 H 1.09004 * 109.47113 * 210.00095 * 12 11 4 35 35 H 1.08995 * 109.46794 * 209.99695 * 14 13 11 36 36 H 1.09000 * 109.46926 * 329.98980 * 14 13 11 37 37 H 0.97006 * 120.00176 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7900 1.5006 -0.0013 6 1 5.6724 0.9369 -0.3039 7 6 5.0011 2.1172 1.3907 8 6 4.9950 3.6463 1.3605 9 6 4.0745 4.1239 0.2064 10 16 4.5301 2.9315 -1.1187 11 6 3.6142 -0.7155 -0.0004 12 6 4.8350 -1.5991 -0.0014 13 6 2.3271 -1.1331 -0.0048 14 6 1.8598 -2.5658 -0.0111 15 6 1.7010 -3.0486 1.4076 16 1 1.9164 -2.3843 2.2314 17 6 1.2796 -4.3380 1.6538 18 7 1.0168 -5.1469 0.6507 19 14 1.0820 -4.9363 3.4125 20 1 1.4376 -3.8415 4.3506 21 1 -0.3273 -5.3451 3.6408 22 1 1.9780 -6.0977 3.6438 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 4.2061 1.7741 2.0529 27 1 5.9578 1.7759 1.7864 28 1 4.6202 4.0294 2.3096 29 1 6.0076 4.0128 1.1925 30 1 3.0230 4.0277 0.4769 31 1 4.3108 5.1467 -0.0871 32 1 5.1303 -1.8119 1.0260 33 1 5.6507 -1.0912 -0.5161 34 1 4.6070 -2.5332 -0.5149 35 1 0.9023 -2.6334 -0.5273 36 1 2.5944 -3.1853 -0.5256 37 1 0.7207 -6.0543 0.8240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261336283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = 41.382979 kcal Electronic energy + Delta-G solvation = -18261.772851 eV Core-core repulsion = 15551.502110 eV Total energy + Delta-G solvation = -2710.270740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.16768 -37.36152 -35.41518 -34.39216 -33.20563 -30.81251 -30.02885 -27.97473 -27.37503 -25.56418 -24.22267 -21.89533 -20.47012 -20.22994 -18.41052 -18.02625 -17.27007 -16.51662 -16.35188 -15.92023 -15.24153 -14.93886 -14.40263 -14.29295 -14.19373 -14.05314 -13.79168 -13.46252 -13.19915 -13.13742 -12.98366 -12.67435 -12.66041 -12.56837 -12.44945 -12.39753 -11.88261 -11.77541 -11.45735 -11.13578 -11.08772 -10.50720 -9.80898 -9.08288 -8.79096 -8.08347 -6.21244 0.42552 1.11400 1.26141 1.41261 1.42603 1.52208 1.54933 1.99430 2.47900 3.19814 3.34626 3.50641 3.79694 3.90035 3.94511 4.06997 4.21913 4.30142 4.46915 4.57357 4.64151 4.72894 4.82013 4.84391 4.87218 4.92036 4.95792 5.04693 5.11982 5.19306 5.39578 5.47706 5.79709 5.85795 5.95520 6.22768 6.36397 6.90403 6.91997 7.46373 8.98709 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.005123 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.449826 B = 5464.135490 C = 5619.799405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.058 3.942 3 N -0.304 5.304 4 N -0.372 5.372 5 C 0.208 3.792 6 H 0.150 0.850 7 C -0.138 4.138 8 C -0.111 4.111 9 C -0.058 4.058 10 S -0.305 6.305 11 C 0.064 3.936 12 C -0.077 4.077 13 C -0.219 4.219 14 C 0.104 3.896 15 C -0.510 4.510 16 H 0.044 0.956 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.956 3.044 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.277 1.277 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.072 0.928 35 H -0.002 1.002 36 H 0.001 0.999 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.123 16.521 1.536 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.127 5.127 4 N -0.157 5.157 5 C -0.004 4.004 6 H 0.167 0.833 7 C -0.178 4.178 8 C -0.149 4.149 9 C -0.206 4.206 10 S -0.076 6.076 11 C -0.063 4.063 12 C -0.135 4.135 13 C -0.230 4.230 14 C 0.066 3.934 15 C -0.549 4.549 16 H 0.063 0.937 17 C -0.189 4.189 18 N -0.571 5.571 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.202 1.202 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.016 0.984 36 H 0.020 0.980 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.354 17.882 0.267 20.666 hybrid contribution -0.700 -1.878 1.714 2.637 sum 9.654 16.004 1.981 18.795 Atomic orbital electron populations 1.20090 0.86084 1.02961 1.02894 1.22540 0.97818 0.90497 0.99971 1.77063 0.86636 1.22243 1.26741 1.48789 1.04694 1.03354 1.58892 1.23983 0.86645 0.92097 0.97689 0.83273 1.22535 1.04905 0.97132 0.93265 1.22360 1.01363 0.92411 0.98810 1.24501 1.02861 0.99995 0.93244 1.88034 1.89617 1.09758 1.20213 1.21115 0.97611 0.84612 1.02974 1.20378 0.91902 0.97584 1.03655 1.20396 0.92110 0.97384 1.13108 1.17281 0.94272 0.86311 0.95530 1.21346 1.44060 0.96827 0.92636 0.93739 1.25790 0.95277 0.96978 1.00902 1.70083 1.47301 1.07206 1.32501 0.85533 0.77867 0.78199 0.80243 1.19419 1.20480 1.20232 0.90249 0.91388 0.90172 0.92405 0.86493 0.88284 0.87799 0.90214 0.85031 0.89830 0.89175 0.90933 0.98360 0.98046 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.31 10.12 71.24 0.72 -1.59 16 2 C 0.06 2.50 7.22 43.10 0.31 2.81 16 3 N -0.30 -12.19 12.16 -47.38 -0.58 -12.76 16 4 N -0.37 -13.22 3.32 -321.50 -1.07 -14.28 16 5 C 0.21 5.38 4.10 86.62 0.36 5.74 16 6 H 0.15 3.19 6.80 -2.39 -0.02 3.17 16 7 C -0.14 -2.77 6.16 30.81 0.19 -2.58 16 8 C -0.11 -1.63 6.34 31.31 0.20 -1.43 16 9 C -0.06 -1.10 7.52 72.72 0.55 -0.55 16 10 S -0.30 -7.96 22.59 -56.49 -1.28 -9.24 16 11 C 0.06 2.51 6.93 41.41 0.29 2.80 16 12 C -0.08 -2.45 9.87 71.24 0.70 -1.74 16 13 C -0.22 -10.23 5.29 -20.14 -0.11 -10.33 16 14 C 0.10 5.63 4.92 29.10 0.14 5.77 16 15 C -0.51 -29.04 9.09 25.60 0.23 -28.81 16 16 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 17 C 0.01 0.46 5.46 84.65 0.46 0.93 16 18 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 19 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 24 H 0.07 2.78 7.94 -2.39 -0.02 2.76 16 25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.06 1.50 7.87 -2.38 -0.02 1.48 16 27 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 33 H 0.09 2.13 6.98 -2.39 -0.02 2.11 16 34 H 0.07 2.56 7.14 -2.38 -0.02 2.54 16 35 H 0.00 -0.11 7.94 -2.39 -0.02 -0.13 16 36 H 0.00 0.08 7.14 -2.39 -0.02 0.06 16 37 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -70.19 318.24 4.48 -65.70 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.05 Total: 8.70 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.04 Total: -28.98 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.36 Total: -82.42 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.28 Total: -9.24 kcal Total: -70.19 4.48 -65.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261336283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.087 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds