Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35314 * 126.12709 * 2 1 4 4 C 1.50702 * 126.03934 * 0.04105 * 3 2 1 5 5 C 1.50704 * 109.46970 * 84.99895 * 4 3 2 6 6 H 1.07998 * 120.00231 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99556 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00436 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99509 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47415 * 89.99766 * 9 7 5 11 11 H 1.48498 * 109.46766 * 209.99269 * 9 7 5 12 12 H 1.48497 * 109.47108 * 329.99481 * 9 7 5 13 13 C 1.39868 * 107.92062 * 179.90748 * 3 2 1 14 14 N 1.30838 * 108.20004 * 0.36600 * 13 3 2 15 15 N 1.34953 * 126.12564 * 180.31705 * 2 1 3 16 16 C 1.46494 * 126.03715 * 359.94061 * 15 2 1 17 17 C 1.52577 * 109.22577 * 240.59660 * 16 15 2 18 18 C 1.53126 * 109.94726 * 168.96191 * 17 16 15 19 19 S 1.81745 * 108.80534 * 63.08628 * 18 17 16 20 20 C 1.81744 * 102.22327 * 306.71270 * 19 18 17 21 21 C 1.52580 * 109.22804 * 119.40033 * 16 15 2 22 22 H 1.09001 * 109.46953 * 269.68258 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.67856 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68486 * 1 2 3 25 25 H 1.08998 * 109.47311 * 204.99709 * 4 3 2 26 26 H 1.09001 * 109.47353 * 325.00018 * 4 3 2 27 27 H 0.96999 * 120.00346 * 180.02562 * 8 7 5 28 28 H 1.07994 * 125.90192 * 180.14355 * 13 3 2 29 29 H 1.09007 * 109.22547 * 359.97438 * 16 15 2 30 30 H 1.08996 * 109.39149 * 289.15300 * 17 16 15 31 31 H 1.09007 * 109.39224 * 48.85518 * 17 16 15 32 32 H 1.09001 * 109.60533 * 303.27924 * 18 17 16 33 33 H 1.09000 * 109.67678 * 182.93704 * 18 17 16 34 34 H 1.08993 * 109.57897 * 293.46174 * 20 19 18 35 35 H 1.09006 * 109.68299 * 173.13427 * 20 19 18 36 36 H 1.08998 * 109.39096 * 311.14343 * 21 16 15 37 37 H 1.09007 * 109.38770 * 70.84429 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 0.0009 5 6 1.5724 2.9672 1.4167 6 1 1.7193 2.2767 2.2340 7 6 1.1360 4.2507 1.6683 8 7 0.9566 5.0913 0.6730 9 14 0.7995 4.7954 3.4232 10 1 2.0379 5.3672 4.0102 11 1 -0.2704 5.8252 3.4252 12 1 0.3634 3.6269 4.2292 13 6 3.6335 0.6559 0.0021 14 7 3.6334 -0.6524 -0.0045 15 7 2.3027 -1.0900 -0.0060 16 6 1.8540 -2.4845 -0.0125 17 6 2.3744 -3.1856 1.2387 18 6 1.6978 -4.5507 1.3923 19 16 2.1493 -5.5914 -0.0276 20 6 1.6964 -4.5371 -1.4370 21 6 2.3722 -3.1733 -1.2715 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3634 0.8928 -0.5088 24 1 -0.3633 -0.8871 -0.5187 25 1 2.6184 3.1589 -0.4336 26 1 0.9303 2.6159 -0.5880 27 1 0.6499 5.9944 0.8501 28 1 4.5084 1.2891 0.0049 29 1 0.7642 -2.5110 -0.0113 30 1 3.4525 -3.3227 1.1548 31 1 2.1560 -2.5736 2.1139 32 1 0.6159 -4.4214 1.4211 33 1 2.0336 -5.0251 2.3144 34 1 0.6145 -4.4076 -1.4634 35 1 2.0315 -5.0006 -2.3649 36 1 2.1523 -2.5527 -2.1401 37 1 3.4505 -3.3112 -1.1907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261341083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = 55.996779 kcal Electronic energy + Delta-G solvation = -18124.851710 eV Core-core repulsion = 15415.214672 eV Total energy + Delta-G solvation = -2709.637039 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73787 -37.17690 -33.36741 -31.99403 -31.84417 -31.22947 -28.33434 -26.20423 -25.49427 -23.34854 -22.57151 -21.90064 -19.33271 -18.62425 -17.06159 -16.38271 -16.22215 -15.12307 -14.51740 -14.42284 -14.32792 -14.00008 -13.46295 -13.17851 -12.99074 -12.93353 -12.82731 -12.27547 -12.15277 -11.92876 -11.71681 -11.44928 -11.22645 -11.08476 -10.77013 -10.69748 -10.56581 -10.06534 -9.94345 -9.47080 -9.35374 -8.59592 -8.35695 -7.95281 -7.34546 -5.97136 -4.00034 1.47481 2.23471 2.49711 2.90459 3.32190 3.38578 3.41398 3.69082 4.22417 4.49193 4.54499 4.57948 4.66162 4.90508 5.00112 5.02017 5.15464 5.35949 5.38904 5.40617 5.52428 5.59234 5.70175 5.73099 5.93030 5.98341 6.05235 6.38633 6.48210 6.61823 6.97779 7.42696 7.59631 7.75453 7.84372 7.99580 8.43188 8.45135 9.05348 9.63337 11.11925 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.004326 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.390043 B = 6470.533522 C = 6704.223684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 C -0.179 4.179 4 C 0.086 3.914 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.046 3.954 14 N -0.311 5.311 15 N -0.382 5.382 16 C 0.167 3.833 17 C -0.129 4.129 18 C -0.077 4.077 19 S -0.268 6.268 20 C -0.077 4.077 21 C -0.128 4.128 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.025 0.975 26 H 0.023 0.977 27 H 0.260 0.740 28 H 0.175 0.825 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -18.067 -2.630 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.189 4.189 4 C 0.048 3.952 5 C -0.542 4.542 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.139 4.139 14 N -0.132 5.132 15 N -0.167 5.167 16 C 0.064 3.936 17 C -0.169 4.169 18 C -0.225 4.225 19 S -0.043 6.043 20 C -0.226 4.226 21 C -0.168 4.168 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.192 0.808 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.229 -20.097 -2.681 20.276 hybrid contribution -1.169 2.372 1.067 2.851 sum -0.940 -17.726 -1.613 17.824 Atomic orbital electron populations 1.20291 0.88174 1.02448 1.02771 1.20726 0.94168 0.86764 1.05075 1.20680 0.91391 0.97912 1.08930 1.17654 0.96208 0.84385 0.96909 1.21141 1.43922 0.96697 0.92478 0.92911 1.24991 0.95822 0.96744 0.96787 1.69950 1.47098 1.05931 1.30643 0.86631 0.77959 0.78353 0.85284 1.20698 1.21281 1.20047 1.23754 0.98380 0.91567 1.00222 1.77120 0.96700 1.13141 1.26235 1.48291 1.04082 1.04005 1.60300 1.20948 0.98831 0.78455 0.95363 1.22061 1.02393 0.94337 0.98063 1.23454 1.03434 0.97022 0.98630 1.86896 1.85880 1.28856 1.02628 1.23441 1.03397 0.96953 0.98794 1.22059 1.02455 0.94416 0.97879 0.90832 0.89304 0.93108 0.95720 0.95854 0.93015 0.80787 0.88851 0.89278 0.89989 0.89568 0.87192 0.89609 0.87214 0.90110 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.73 36.01 0.35 -0.91 16 2 C 0.06 1.07 6.93 -82.26 -0.57 0.50 16 3 C -0.18 -3.92 5.29 -105.05 -0.56 -4.48 16 4 C 0.09 2.20 5.19 -29.03 -0.15 2.05 16 5 C -0.50 -13.95 9.09 -34.44 -0.31 -14.26 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.05 0.94 11.96 -17.37 -0.21 0.73 16 14 N -0.31 -5.92 12.43 30.62 0.38 -5.54 16 15 N -0.38 -6.51 3.25 -51.11 -0.17 -6.68 16 16 C 0.17 2.12 2.65 -68.37 -0.18 1.94 16 17 C -0.13 -1.51 5.27 -26.88 -0.14 -1.65 16 18 C -0.08 -0.71 6.46 37.22 0.24 -0.47 16 19 S -0.27 -2.73 22.33 -107.50 -2.40 -5.13 16 20 C -0.08 -0.68 6.46 37.21 0.24 -0.44 16 21 C -0.13 -1.44 5.28 -26.89 -0.14 -1.58 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.09 1.52 7.24 -51.93 -0.38 1.15 16 24 H 0.05 0.64 7.09 -51.93 -0.37 0.27 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.62 7.30 -51.93 -0.38 0.24 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.18 3.18 8.06 -52.49 -0.42 2.75 16 29 H 0.09 1.06 6.59 -51.93 -0.34 0.72 16 30 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -30.68 315.49 -8.89 -39.57 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.65 Total: -0.81 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.53 Total: -17.06 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.95 Total: -37.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.40 Total: -5.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.68 -8.89 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.571 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds