Wall clock time and date at job start Mon Mar 30 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35314 * 126.12709 * 2 1 4 4 C 1.50702 * 126.03934 * 0.04105 * 3 2 1 5 5 C 1.50704 * 109.46970 * 84.99895 * 4 3 2 6 6 H 1.07998 * 120.00231 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99556 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00436 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99509 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47415 * 89.99766 * 9 7 5 11 11 H 1.48498 * 109.46766 * 209.99269 * 9 7 5 12 12 H 1.48497 * 109.47108 * 329.99481 * 9 7 5 13 13 C 1.39868 * 107.92062 * 179.90748 * 3 2 1 14 14 N 1.30838 * 108.20004 * 0.36600 * 13 3 2 15 15 N 1.34953 * 126.12564 * 180.31705 * 2 1 3 16 16 C 1.46494 * 126.03715 * 359.94061 * 15 2 1 17 17 C 1.52577 * 109.22577 * 240.59660 * 16 15 2 18 18 C 1.53126 * 109.94726 * 168.96191 * 17 16 15 19 19 S 1.81745 * 108.80534 * 63.08628 * 18 17 16 20 20 C 1.81744 * 102.22327 * 306.71270 * 19 18 17 21 21 C 1.52580 * 109.22804 * 119.40033 * 16 15 2 22 22 H 1.09001 * 109.46953 * 269.68258 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.67856 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68486 * 1 2 3 25 25 H 1.08998 * 109.47311 * 204.99709 * 4 3 2 26 26 H 1.09001 * 109.47353 * 325.00018 * 4 3 2 27 27 H 0.96999 * 120.00346 * 180.02562 * 8 7 5 28 28 H 1.07994 * 125.90192 * 180.14355 * 13 3 2 29 29 H 1.09007 * 109.22547 * 359.97438 * 16 15 2 30 30 H 1.08996 * 109.39149 * 289.15300 * 17 16 15 31 31 H 1.09007 * 109.39224 * 48.85518 * 17 16 15 32 32 H 1.09001 * 109.60533 * 303.27924 * 18 17 16 33 33 H 1.09000 * 109.67678 * 182.93704 * 18 17 16 34 34 H 1.08993 * 109.57897 * 293.46174 * 20 19 18 35 35 H 1.09006 * 109.68299 * 173.13427 * 20 19 18 36 36 H 1.08998 * 109.39096 * 311.14343 * 21 16 15 37 37 H 1.09007 * 109.38770 * 70.84429 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 0.0009 5 6 1.5724 2.9672 1.4167 6 1 1.7193 2.2767 2.2340 7 6 1.1360 4.2507 1.6683 8 7 0.9566 5.0913 0.6730 9 14 0.7995 4.7954 3.4232 10 1 2.0379 5.3672 4.0102 11 1 -0.2704 5.8252 3.4252 12 1 0.3634 3.6269 4.2292 13 6 3.6335 0.6559 0.0021 14 7 3.6334 -0.6524 -0.0045 15 7 2.3027 -1.0900 -0.0060 16 6 1.8540 -2.4845 -0.0125 17 6 2.3744 -3.1856 1.2387 18 6 1.6978 -4.5507 1.3923 19 16 2.1493 -5.5914 -0.0276 20 6 1.6964 -4.5371 -1.4370 21 6 2.3722 -3.1733 -1.2715 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3634 0.8928 -0.5088 24 1 -0.3633 -0.8871 -0.5187 25 1 2.6184 3.1589 -0.4336 26 1 0.9303 2.6159 -0.5880 27 1 0.6499 5.9944 0.8501 28 1 4.5084 1.2891 0.0049 29 1 0.7642 -2.5110 -0.0113 30 1 3.4525 -3.3227 1.1548 31 1 2.1560 -2.5736 2.1139 32 1 0.6159 -4.4214 1.4211 33 1 2.0336 -5.0251 2.3144 34 1 0.6145 -4.4076 -1.4634 35 1 2.0315 -5.0006 -2.3649 36 1 2.1523 -2.5527 -2.1401 37 1 3.4505 -3.3112 -1.1907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:29 Heat of formation + Delta-G solvation = 39.443856 kcal Electronic energy + Delta-G solvation = -18125.569499 eV Core-core repulsion = 15415.214672 eV Total energy + Delta-G solvation = -2710.354827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20400 -38.22894 -35.38088 -33.43194 -32.87953 -32.66257 -29.92551 -27.45172 -27.10565 -24.50294 -24.18346 -23.08367 -20.57523 -20.16394 -18.40573 -17.90664 -17.67511 -16.48774 -16.23679 -15.49852 -15.42588 -14.91552 -14.74363 -14.38758 -14.26443 -14.14858 -13.96542 -13.82851 -13.54211 -13.36000 -13.11751 -12.92616 -12.58896 -12.56025 -12.44246 -12.19442 -11.80473 -11.66172 -11.44523 -11.20272 -10.76589 -10.51744 -10.01967 -8.99644 -8.73094 -8.09942 -6.22769 0.73653 1.00500 1.41853 1.42751 1.50091 1.53165 1.61562 2.03622 2.47494 3.18450 3.24325 3.64337 3.67861 3.82900 3.90697 4.06422 4.12860 4.13532 4.26519 4.38700 4.49297 4.69338 4.73327 4.74011 4.80014 4.84187 4.89845 4.98781 5.07234 5.16726 5.33711 5.46058 5.79178 5.84729 5.89143 6.27955 6.36281 6.88879 6.89579 7.45047 8.97260 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.004326 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.390043 B = 6470.533522 C = 6704.223684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 C -0.223 4.223 4 C 0.101 3.899 5 C -0.516 4.516 6 H 0.046 0.954 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.034 3.966 14 N -0.316 5.316 15 N -0.369 5.369 16 C 0.156 3.844 17 C -0.122 4.122 18 C -0.065 4.065 19 S -0.294 6.294 20 C -0.065 4.065 21 C -0.120 4.120 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.093 0.907 25 H -0.004 1.004 26 H 0.004 0.996 27 H 0.263 0.737 28 H 0.182 0.818 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -20.089 -1.863 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.234 4.234 4 C 0.063 3.937 5 C -0.554 4.554 6 H 0.065 0.935 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.192 1.192 13 C -0.151 4.151 14 N -0.137 5.137 15 N -0.153 5.153 16 C 0.055 3.945 17 C -0.162 4.162 18 C -0.214 4.214 19 S -0.068 6.068 20 C -0.214 4.214 21 C -0.160 4.160 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.014 0.986 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.199 0.801 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.068 -22.159 -1.915 22.267 hybrid contribution -0.752 2.915 0.782 3.110 sum -1.820 -19.244 -1.132 19.363 Atomic orbital electron populations 1.20374 0.85930 1.03763 1.03505 1.21054 0.95542 0.86549 1.02662 1.20447 0.92905 0.96942 1.13089 1.17308 0.94346 0.86595 0.95483 1.21390 1.43827 0.96917 0.93258 0.93525 1.25813 0.95507 0.96766 1.00983 1.70069 1.47867 1.06336 1.32868 0.85574 0.77945 0.78101 0.80172 1.20252 1.20557 1.19185 1.23865 0.98230 0.92184 1.00822 1.77076 0.98064 1.12332 1.26241 1.48635 1.03102 1.05376 1.58191 1.21455 1.00316 0.76093 0.96679 1.21957 1.01614 0.95603 0.96981 1.23429 1.04271 0.95002 0.98676 1.87072 1.86338 1.29558 1.03824 1.23440 1.04330 0.94905 0.98695 1.21955 1.01629 0.95663 0.96781 0.90265 0.90892 0.88885 0.98590 0.97747 0.92791 0.80101 0.86402 0.91003 0.91038 0.87614 0.86046 0.87545 0.85819 0.90462 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.34 9.73 71.24 0.69 -1.64 16 2 C 0.07 2.53 6.93 41.41 0.29 2.82 16 3 C -0.22 -10.01 5.29 -20.14 -0.11 -10.12 16 4 C 0.10 5.36 5.19 29.10 0.15 5.51 16 5 C -0.52 -29.15 9.09 25.60 0.23 -28.92 16 6 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 9 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.03 1.39 11.96 85.24 1.02 2.41 16 14 N -0.32 -11.97 12.43 -57.03 -0.71 -12.68 16 15 N -0.37 -12.11 3.25 -315.62 -1.02 -13.13 16 16 C 0.16 3.55 2.65 44.71 0.12 3.67 16 17 C -0.12 -2.60 5.27 30.50 0.16 -2.43 16 18 C -0.07 -1.01 6.46 72.02 0.47 -0.54 16 19 S -0.29 -5.19 22.33 -56.49 -1.26 -6.45 16 20 C -0.07 -0.94 6.46 72.02 0.46 -0.48 16 21 C -0.12 -2.42 5.28 30.49 0.16 -2.26 16 22 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.07 2.47 7.24 -2.39 -0.02 2.45 16 24 H 0.09 1.99 7.09 -2.39 -0.02 1.97 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.00 0.24 7.30 -2.39 -0.02 0.22 16 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.18 6.90 8.06 -2.91 -0.02 6.88 16 29 H 0.12 2.16 6.59 -2.38 -0.02 2.14 16 30 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 31 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.71 8.06 -2.38 -0.02 1.69 16 Total: -1.00 -67.20 315.49 4.47 -62.73 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.04 Total: 9.86 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.11 Total: -31.12 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.45 Total: -81.07 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -1.26 Total: -6.45 kcal Total: -67.20 4.47 -62.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.171 kcal (2) G-P(sol) polarization free energy of solvation -67.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds