Wall clock time and date at job start Mon Mar 30 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.74732 * 2 1 4 4 S 1.76204 * 107.92265 * 179.97438 * 3 2 1 5 5 C 1.70981 * 90.28270 * 0.02562 * 4 3 2 6 6 C 1.50692 * 124.91434 * 180.26653 * 5 4 3 7 7 N 1.46904 * 112.85012 * 234.53045 * 6 5 4 8 8 C 1.46905 * 110.99545 * 64.96955 * 7 6 5 9 9 H 1.09005 * 109.47134 * 356.23453 * 8 7 6 10 10 C 1.53001 * 109.47023 * 116.23564 * 8 7 6 11 11 C 1.50697 * 109.46767 * 236.23380 * 8 7 6 12 12 H 1.07999 * 120.00260 * 0.02562 * 11 8 7 13 13 C 1.37886 * 119.99736 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99992 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99789 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47008 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46551 * 120.00469 * 15 13 11 18 18 H 1.48499 * 109.47206 * 240.00375 * 15 13 11 19 19 C 1.53783 * 113.61512 * 103.33893 * 6 5 4 20 20 C 1.53955 * 87.01979 * 220.04644 * 19 6 5 21 21 C 1.53772 * 87.11047 * 25.36188 * 20 19 6 22 22 N 1.29025 * 110.16958 * 359.97438 * 5 4 3 23 23 H 1.09007 * 109.47312 * 270.02198 * 1 2 3 24 24 H 1.08999 * 109.47352 * 30.02005 * 1 2 3 25 25 H 1.09000 * 109.47085 * 150.02424 * 1 2 3 26 26 H 1.08000 * 126.04143 * 359.95695 * 3 2 1 27 27 H 1.00903 * 111.00131 * 188.91348 * 7 6 5 28 28 H 1.08994 * 109.47237 * 65.94321 * 10 8 7 29 29 H 1.09005 * 109.46746 * 185.94372 * 10 8 7 30 30 H 1.08998 * 109.47319 * 305.93731 * 10 8 7 31 31 H 0.96993 * 119.99366 * 179.97438 * 14 13 11 32 32 H 1.08996 * 113.61557 * 334.56602 * 19 6 5 33 33 H 1.09008 * 113.61226 * 105.47044 * 19 6 5 34 34 H 1.09001 * 113.53435 * 270.80882 * 20 19 6 35 35 H 1.08995 * 113.66548 * 139.93368 * 20 19 6 36 36 H 1.09004 * 113.61219 * 220.08658 * 21 20 19 37 37 H 1.09002 * 113.68898 * 89.20191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5040 -0.9819 0.0002 6 6 4.4835 -2.1270 0.0062 7 7 4.2629 -3.0722 -1.0965 8 6 4.5105 -2.4325 -2.3956 9 1 4.7382 -1.3774 -2.2435 10 6 5.6942 -3.1158 -3.0832 11 6 3.2836 -2.5619 -3.2611 12 1 2.4075 -3.0683 -2.8838 13 6 3.2794 -2.0329 -4.5344 14 7 4.3461 -1.4158 -4.9937 15 14 1.7589 -2.1939 -5.6076 16 1 0.7029 -2.9260 -4.8631 17 1 1.2625 -0.8417 -5.9686 18 1 2.1024 -2.9415 -6.8438 19 6 4.6300 -2.8051 1.3787 20 6 6.1386 -2.8931 1.0844 21 6 5.9486 -1.6838 0.1539 22 7 2.2199 -1.1084 0.0001 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.8391 2.1308 -0.0007 27 1 4.8331 -3.8971 -0.9852 28 1 5.4271 -4.1432 -3.3303 29 1 5.9450 -2.5759 -3.9963 30 1 6.5537 -3.1150 -2.4129 31 1 4.3431 -1.0440 -5.8895 32 1 4.3860 -2.1521 2.2166 33 1 4.1389 -3.7763 1.4405 34 1 6.4277 -3.8050 0.5618 35 1 6.7663 -2.6833 1.9504 36 1 6.5205 -1.7509 -0.7717 37 1 6.0657 -0.7229 0.6550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264870371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:00 Heat of formation + Delta-G solvation = 66.823919 kcal Electronic energy + Delta-G solvation = -18831.060994 eV Core-core repulsion = 16121.893455 eV Total energy + Delta-G solvation = -2709.167539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88198 -38.55108 -34.52323 -31.78048 -31.39229 -28.08113 -27.19934 -25.80806 -25.35198 -25.00107 -22.15873 -20.38602 -18.90556 -18.73408 -17.07367 -16.18339 -15.64341 -15.21862 -14.57806 -14.33225 -14.15414 -13.26540 -13.20151 -12.95294 -12.65713 -12.31628 -12.15124 -12.11042 -11.64981 -11.47262 -11.04001 -10.91285 -10.84639 -10.65314 -10.59862 -10.31056 -10.18827 -10.01333 -9.73693 -9.06973 -8.94164 -8.77008 -8.31333 -8.14786 -7.28165 -5.91205 -3.91081 1.26584 1.90017 2.28371 3.35138 3.38857 3.42674 3.50047 4.46694 4.51954 4.82788 4.89614 5.03596 5.14475 5.37638 5.40461 5.51050 5.62438 5.76293 5.84538 5.87408 5.90052 6.05372 6.13025 6.24217 6.29723 6.36577 6.51107 6.68574 6.74039 6.85826 7.01996 7.34439 7.71640 7.98516 8.27026 8.41945 8.50617 8.67134 9.17198 9.72703 11.16200 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.009584 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.107311 B = 2920.974217 C = 4043.514558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.072 3.928 3 C -0.281 4.281 4 S 0.092 5.908 5 C 0.112 3.888 6 C 0.180 3.820 7 N -0.645 5.645 8 C 0.214 3.786 9 H 0.023 0.977 10 C -0.159 4.159 11 C -0.477 4.477 12 H 0.064 0.936 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.179 4.179 22 N -0.443 5.443 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.168 0.832 27 H 0.331 0.669 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.006 0.994 31 H 0.257 0.743 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 2.875 12.281 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.420 4.420 4 S 0.348 5.652 5 C -0.168 4.168 6 C 0.083 3.917 7 N -0.276 5.276 8 C 0.107 3.893 9 H 0.041 0.959 10 C -0.217 4.217 11 C -0.517 4.517 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.542 5.542 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.213 1.213 19 C -0.161 4.161 20 C -0.174 4.174 21 C -0.220 4.220 22 N -0.156 5.156 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.185 0.815 27 H 0.150 0.850 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.908 3.102 12.063 12.488 hybrid contribution -0.724 0.240 -0.959 1.225 sum 0.184 3.342 11.104 11.597 Atomic orbital electron populations 1.20304 0.87850 1.03261 1.02100 1.20315 0.98066 0.86773 1.00965 1.26639 0.95398 1.03429 1.16545 1.83695 1.07728 1.04685 1.69077 1.26648 0.93558 0.96088 1.00522 1.20434 0.87973 0.89323 0.93977 1.60576 1.59711 1.05952 1.01383 1.19186 0.93884 0.93022 0.83232 0.95942 1.22324 0.96365 1.00601 1.02448 1.21232 0.99042 1.34246 0.97133 0.91812 1.24932 0.96092 0.95746 0.97962 1.69897 1.27999 1.38815 1.17479 0.86531 0.83634 0.77543 0.80305 1.19707 1.21386 1.21266 1.23090 0.95763 1.01515 0.95755 1.22797 0.96607 0.98526 0.99520 1.23875 0.98537 0.98478 1.01061 1.65981 1.04497 1.30254 1.14897 0.91252 0.91255 0.90459 0.81468 0.85037 0.94606 0.89429 0.97522 0.93361 0.90141 0.90158 0.89887 0.91232 0.90033 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.31 36.00 0.37 -0.73 16 2 C 0.07 1.31 6.74 -84.22 -0.57 0.74 16 3 C -0.28 -4.69 11.13 29.12 0.32 -4.37 16 4 S 0.09 1.60 21.56 -107.50 -2.32 -0.72 16 5 C 0.11 2.23 5.54 -13.46 -0.07 2.15 16 6 C 0.18 3.30 0.99 -131.94 -0.13 3.17 16 7 N -0.65 -13.75 6.31 -94.59 -0.60 -14.35 16 8 C 0.21 5.32 1.79 -68.86 -0.12 5.20 16 9 H 0.02 0.62 6.81 -51.93 -0.35 0.27 16 10 C -0.16 -3.74 8.62 37.16 0.32 -3.42 16 11 C -0.48 -13.54 8.84 -34.44 -0.30 -13.85 16 12 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.05 1.49 5.30 -17.82 -0.09 1.39 16 14 N -0.90 -26.17 11.39 55.43 0.63 -25.54 16 15 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 16 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 C -0.12 -1.80 7.34 -25.83 -0.19 -1.99 16 20 C -0.14 -1.79 7.75 -25.83 -0.20 -1.99 16 21 C -0.18 -2.84 6.63 -25.92 -0.17 -3.01 16 22 N -0.44 -9.33 10.53 -8.06 -0.08 -9.41 16 23 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.33 6.38 7.27 -39.29 -0.29 6.09 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 30 H 0.01 0.12 7.20 -51.93 -0.37 -0.25 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.42 6.53 -51.93 -0.34 1.08 16 37 H 0.08 1.16 7.02 -51.93 -0.36 0.80 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -31.12 311.54 -8.90 -40.02 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.37 Total: 4.62 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.84 Total: -16.70 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.05 Total: -49.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.32 Total: -0.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.12 -8.90 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264870371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.847 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds