Wall clock time and date at job start Mon Mar 30 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.74732 * 2 1 4 4 S 1.76204 * 107.92265 * 179.97438 * 3 2 1 5 5 C 1.70981 * 90.28270 * 0.02562 * 4 3 2 6 6 C 1.50692 * 124.91434 * 180.26653 * 5 4 3 7 7 N 1.46904 * 112.85012 * 234.53045 * 6 5 4 8 8 C 1.46905 * 110.99545 * 64.96955 * 7 6 5 9 9 H 1.09005 * 109.47134 * 356.23453 * 8 7 6 10 10 C 1.53001 * 109.47023 * 116.23564 * 8 7 6 11 11 C 1.50697 * 109.46767 * 236.23380 * 8 7 6 12 12 H 1.07999 * 120.00260 * 0.02562 * 11 8 7 13 13 C 1.37886 * 119.99736 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99992 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99789 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47008 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46551 * 120.00469 * 15 13 11 18 18 H 1.48499 * 109.47206 * 240.00375 * 15 13 11 19 19 C 1.53783 * 113.61512 * 103.33893 * 6 5 4 20 20 C 1.53955 * 87.01979 * 220.04644 * 19 6 5 21 21 C 1.53772 * 87.11047 * 25.36188 * 20 19 6 22 22 N 1.29025 * 110.16958 * 359.97438 * 5 4 3 23 23 H 1.09007 * 109.47312 * 270.02198 * 1 2 3 24 24 H 1.08999 * 109.47352 * 30.02005 * 1 2 3 25 25 H 1.09000 * 109.47085 * 150.02424 * 1 2 3 26 26 H 1.08000 * 126.04143 * 359.95695 * 3 2 1 27 27 H 1.00903 * 111.00131 * 188.91348 * 7 6 5 28 28 H 1.08994 * 109.47237 * 65.94321 * 10 8 7 29 29 H 1.09005 * 109.46746 * 185.94372 * 10 8 7 30 30 H 1.08998 * 109.47319 * 305.93731 * 10 8 7 31 31 H 0.96993 * 119.99366 * 179.97438 * 14 13 11 32 32 H 1.08996 * 113.61557 * 334.56602 * 19 6 5 33 33 H 1.09008 * 113.61226 * 105.47044 * 19 6 5 34 34 H 1.09001 * 113.53435 * 270.80882 * 20 19 6 35 35 H 1.08995 * 113.66548 * 139.93368 * 20 19 6 36 36 H 1.09004 * 113.61219 * 220.08658 * 21 20 19 37 37 H 1.09002 * 113.68898 * 89.20191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5040 -0.9819 0.0002 6 6 4.4835 -2.1270 0.0062 7 7 4.2629 -3.0722 -1.0965 8 6 4.5105 -2.4325 -2.3956 9 1 4.7382 -1.3774 -2.2435 10 6 5.6942 -3.1158 -3.0832 11 6 3.2836 -2.5619 -3.2611 12 1 2.4075 -3.0683 -2.8838 13 6 3.2794 -2.0329 -4.5344 14 7 4.3461 -1.4158 -4.9937 15 14 1.7589 -2.1939 -5.6076 16 1 0.7029 -2.9260 -4.8631 17 1 1.2625 -0.8417 -5.9686 18 1 2.1024 -2.9415 -6.8438 19 6 4.6300 -2.8051 1.3787 20 6 6.1386 -2.8931 1.0844 21 6 5.9486 -1.6838 0.1539 22 7 2.2199 -1.1084 0.0001 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.8391 2.1308 -0.0007 27 1 4.8331 -3.8971 -0.9852 28 1 5.4271 -4.1432 -3.3303 29 1 5.9450 -2.5759 -3.9963 30 1 6.5537 -3.1150 -2.4129 31 1 4.3431 -1.0440 -5.8895 32 1 4.3860 -2.1521 2.2166 33 1 4.1389 -3.7763 1.4405 34 1 6.4277 -3.8050 0.5618 35 1 6.7663 -2.6833 1.9504 36 1 6.5205 -1.7509 -0.7717 37 1 6.0657 -0.7229 0.6550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264870371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:59 Heat of formation + Delta-G solvation = 46.371114 kcal Electronic energy + Delta-G solvation = -18831.947894 eV Core-core repulsion = 16121.893455 eV Total energy + Delta-G solvation = -2710.054439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24931 -39.90836 -36.39167 -33.66127 -32.80246 -29.76366 -28.48246 -27.23776 -27.15649 -26.55583 -23.45989 -22.26705 -20.26596 -20.07411 -18.46482 -18.27570 -17.04133 -16.75341 -16.49696 -15.63503 -15.47679 -15.00982 -14.67689 -14.47303 -14.26306 -13.61843 -13.42930 -13.40802 -13.24726 -13.01286 -12.88554 -12.69454 -12.54234 -12.18518 -12.12901 -11.99253 -11.81869 -11.55404 -11.37596 -11.01885 -10.48410 -10.37504 -10.17019 -9.50041 -8.98162 -8.07759 -6.14689 -0.11256 0.55676 0.91474 1.33792 1.36145 1.48615 1.99525 2.42116 3.18586 3.19889 3.50354 3.61695 3.76137 3.95087 4.08456 4.30741 4.40996 4.51369 4.70984 4.72399 4.77612 4.81767 4.86499 4.88618 5.00994 5.03019 5.08504 5.12861 5.15638 5.34086 5.43707 5.50047 5.72355 5.85167 6.31580 6.63174 6.88733 6.96823 7.06682 7.52959 8.96904 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.009584 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.107311 B = 2920.974217 C = 4043.514558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.042 3.958 3 C -0.276 4.276 4 S 0.106 5.894 5 C 0.084 3.916 6 C 0.158 3.842 7 N -0.656 5.656 8 C 0.228 3.772 9 H -0.006 1.006 10 C -0.146 4.146 11 C -0.492 4.492 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.920 5.920 15 Si 0.944 3.056 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.277 1.277 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.176 4.176 22 N -0.480 5.480 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.202 0.798 27 H 0.340 0.660 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.258 0.742 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 3.281 13.405 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.414 4.414 4 S 0.362 5.638 5 C -0.195 4.195 6 C 0.062 3.938 7 N -0.287 5.287 8 C 0.120 3.880 9 H 0.012 0.988 10 C -0.205 4.205 11 C -0.531 4.531 12 H 0.058 0.942 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.771 3.229 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.202 1.202 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.216 4.216 22 N -0.194 5.194 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.219 0.781 27 H 0.160 0.840 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.048 3.498 13.201 13.697 hybrid contribution -0.788 0.166 -1.275 1.508 sum 0.259 3.664 11.926 12.479 Atomic orbital electron populations 1.20387 0.85663 1.03373 1.03683 1.20901 0.99751 0.86702 1.01609 1.27078 0.94786 1.04640 1.14918 1.83511 1.08434 1.03292 1.68553 1.27001 0.93752 0.97582 1.01193 1.20760 0.89194 0.89312 0.94551 1.60338 1.60534 1.06954 1.00916 1.18815 0.92777 0.91744 0.84684 0.98772 1.22128 0.97093 0.99655 1.01655 1.21415 0.99582 1.34058 0.98015 0.94210 1.25561 0.98483 0.95642 0.99056 1.70000 1.29190 1.39244 1.17741 0.85708 0.80667 0.77533 0.78972 1.20091 1.21011 1.20239 1.23070 0.97059 1.01191 0.93884 1.22765 0.95743 0.97267 0.99718 1.23838 0.96266 1.00423 1.01092 1.66011 1.05426 1.32105 1.15905 0.88922 0.89070 0.92313 0.78148 0.83983 0.94810 0.92251 0.94487 0.93278 0.89044 0.90256 0.89279 0.88184 0.91923 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.31 71.24 0.73 -1.27 16 2 C 0.04 1.52 6.74 41.52 0.28 1.80 16 3 C -0.28 -8.79 11.13 66.78 0.74 -8.05 16 4 S 0.11 3.61 21.56 -56.49 -1.22 2.39 16 5 C 0.08 3.33 5.54 88.52 0.49 3.82 16 6 C 0.16 5.72 0.99 3.30 0.00 5.72 16 7 N -0.66 -28.03 6.31 -453.17 -2.86 -30.89 16 8 C 0.23 11.51 1.79 44.17 0.08 11.58 16 9 H -0.01 -0.31 6.81 -2.38 -0.02 -0.33 16 10 C -0.15 -6.93 8.62 71.98 0.62 -6.31 16 11 C -0.49 -28.44 8.84 25.60 0.23 -28.22 16 12 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 13 C 0.01 0.58 5.30 84.66 0.45 1.03 16 14 N -0.92 -54.05 11.39 21.45 0.24 -53.80 16 15 Si 0.94 46.37 29.54 68.60 2.03 48.39 16 16 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 C -0.11 -3.13 7.34 31.18 0.23 -2.90 16 20 C -0.12 -2.75 7.75 31.18 0.24 -2.51 16 21 C -0.18 -5.34 6.63 31.12 0.21 -5.13 16 22 N -0.48 -20.32 10.53 -179.40 -1.89 -22.20 16 23 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.09 2.08 8.12 -2.39 -0.02 2.06 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.20 4.79 8.06 -2.91 -0.02 4.76 16 27 H 0.34 12.95 7.27 -89.69 -0.65 12.30 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 3.15 6.25 -2.38 -0.01 3.14 16 30 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 33 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.09 2.00 7.73 -2.39 -0.02 1.98 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.13 6.53 -2.38 -0.02 2.12 16 37 H 0.09 2.51 7.02 -2.39 -0.02 2.49 16 Total: -1.00 -68.03 311.54 1.02 -67.01 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.42 Total: 19.53 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.30 Total: -30.43 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.51 Total: -106.90 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.22 Total: 2.39 kcal Total: -68.03 1.02 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264870371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.384 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds