Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31777 * 122.74958 * 2 1 4 4 C 1.29027 * 117.12261 * 180.33073 * 3 2 1 5 5 S 1.70980 * 110.16806 * 359.71495 * 4 3 2 6 6 C 1.33637 * 122.74639 * 179.79475 * 2 1 3 7 7 C 1.50699 * 126.03948 * 359.97438 * 6 2 1 8 8 N 1.46906 * 109.47140 * 89.71646 * 7 6 2 9 9 C 1.46898 * 110.99888 * 180.02562 * 8 7 6 10 10 H 1.08998 * 110.01844 * 325.05731 * 9 8 7 11 11 C 1.53875 * 110.03070 * 86.45489 * 9 8 7 12 12 C 1.54271 * 106.59672 * 119.28352 * 11 9 8 13 13 C 1.54883 * 104.19583 * 23.60715 * 12 11 9 14 14 H 1.08998 * 110.75537 * 80.37608 * 13 12 11 15 15 C 1.50705 * 110.75579 * 203.74288 * 13 12 11 16 16 H 1.07992 * 120.00049 * 118.54320 * 15 13 12 17 17 C 1.37881 * 119.99474 * 298.54845 * 15 13 12 18 18 N 1.31511 * 120.00620 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99521 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47517 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47602 * 120.00104 * 19 17 15 22 22 H 1.48505 * 109.47053 * 239.99793 * 19 17 15 23 23 C 1.54272 * 110.02956 * 203.61940 * 9 8 7 24 24 H 1.08999 * 109.47657 * 270.20438 * 1 2 3 25 25 H 1.09011 * 109.46889 * 30.20476 * 1 2 3 26 26 H 1.09002 * 109.47389 * 150.19842 * 1 2 3 27 27 H 1.08006 * 124.91681 * 179.67650 * 4 3 2 28 28 H 1.09000 * 109.47247 * 329.71667 * 7 6 2 29 29 H 1.09001 * 109.47358 * 209.71093 * 7 6 2 30 30 H 1.00902 * 110.99923 * 303.95945 * 8 7 6 31 31 H 1.09004 * 110.02794 * 238.56522 * 11 9 8 32 32 H 1.09000 * 110.03522 * 359.95175 * 11 9 8 33 33 H 1.09003 * 110.48520 * 142.28839 * 12 11 9 34 34 H 1.09004 * 110.48542 * 264.92691 * 12 11 9 35 35 H 0.96994 * 120.00293 * 179.97438 * 18 17 15 36 36 H 1.08996 * 110.48549 * 335.78315 * 23 9 8 37 37 H 1.08998 * 110.48478 * 98.42594 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0066 5 16 3.9332 -0.6732 -0.0059 6 6 2.2299 -1.1240 0.0040 7 6 1.6846 -2.5288 0.0096 8 7 1.5005 -2.9882 -1.3736 9 6 0.9683 -4.3569 -1.4073 10 1 1.3759 -4.9362 -0.5788 11 6 -0.5679 -4.3274 -1.3246 12 6 -1.0916 -4.9830 -2.6192 13 6 0.0779 -5.8834 -3.0889 14 1 0.0896 -6.8218 -2.5344 15 6 -0.0069 -6.1386 -4.5717 16 1 0.7906 -5.8115 -5.2223 17 6 -1.1026 -6.7897 -5.0976 18 7 -2.0736 -7.1884 -4.3053 19 14 -1.2073 -7.1067 -6.9355 20 1 0.0041 -6.5639 -7.6013 21 1 -1.2950 -8.5684 -7.1816 22 1 -2.4147 -6.4390 -7.4850 23 6 1.3246 -5.0294 -2.7493 24 1 -0.3634 0.0037 1.0276 25 1 -0.3633 0.8882 -0.5171 26 1 -0.3634 -0.8918 -0.5107 27 1 4.2060 1.8026 -0.0125 28 1 0.7260 -2.5445 0.5283 29 1 2.3854 -3.1886 0.5212 30 1 0.9054 -2.3563 -1.8882 31 1 -0.9060 -4.8931 -0.4564 32 1 -0.9186 -3.2975 -1.2586 33 1 -1.9765 -5.5845 -2.4112 34 1 -1.3131 -4.2234 -3.3689 35 1 -2.8445 -7.6461 -4.6753 36 1 1.4932 -4.2773 -3.5199 37 1 2.2030 -5.6648 -2.6362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294910011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = 27.319963 kcal Electronic energy + Delta-G solvation = -17747.755756 eV Core-core repulsion = 15036.875197 eV Total energy + Delta-G solvation = -2710.880559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99589 -37.95829 -34.79371 -32.52202 -31.36014 -28.84088 -28.01669 -26.38968 -25.01266 -23.79173 -23.13326 -19.51544 -19.26621 -18.78788 -18.15481 -16.37602 -15.72231 -15.61014 -14.96467 -14.54301 -14.31802 -13.73334 -13.60071 -13.24903 -12.79131 -12.66869 -12.43693 -12.35941 -12.19657 -11.62371 -11.29842 -11.02692 -10.88777 -10.72694 -10.48605 -10.15172 -9.82543 -9.71640 -9.53603 -9.35852 -9.10510 -8.81487 -8.75416 -8.35193 -8.06011 -5.98102 -4.00531 0.61835 1.30936 1.70642 2.68237 3.31261 3.39538 3.43905 4.12111 4.43716 4.52259 4.85616 4.96857 5.06266 5.32721 5.36554 5.48719 5.50626 5.56193 5.65311 5.74318 5.81584 5.81846 6.17275 6.24257 6.48812 6.64799 6.71949 6.81548 7.04536 7.11892 7.34652 7.49850 7.60703 7.65618 7.74213 7.93539 8.06597 8.49396 9.02431 9.63653 11.11136 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.003822 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.631853 B = 7323.388131 C = 7472.952564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.469 5.469 4 C 0.006 3.994 5 S 0.138 5.862 6 C -0.205 4.205 7 C 0.133 3.867 8 N -0.678 5.678 9 C 0.083 3.917 10 H 0.067 0.933 11 C -0.155 4.155 12 C -0.097 4.097 13 C 0.048 3.952 14 H 0.028 0.972 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.102 4.102 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.196 0.804 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.342 0.658 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.258 0.742 36 H 0.062 0.938 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.179 12.797 10.993 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 N -0.183 5.183 4 C -0.292 4.292 5 S 0.392 5.608 6 C -0.327 4.327 7 C 0.002 3.998 8 N -0.309 5.309 9 C -0.026 4.026 10 H 0.086 0.914 11 C -0.194 4.194 12 C -0.136 4.136 13 C 0.029 3.971 14 H 0.046 0.954 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.140 4.140 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.213 0.787 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.437 12.539 10.923 19.121 hybrid contribution -1.881 0.121 -0.712 2.015 sum 7.557 12.660 10.211 17.934 Atomic orbital electron populations 1.20364 0.87196 1.03472 1.02802 1.20237 0.98194 0.86272 1.02896 1.66165 1.05122 1.31676 1.15326 1.28246 0.95299 1.00410 1.05223 1.84031 1.07218 1.02682 1.66860 1.25732 0.95159 1.00481 1.11301 1.20279 0.99156 0.88165 0.92246 1.60824 1.55164 1.04110 1.10801 1.22389 0.92875 0.87546 0.99816 0.91449 1.22991 0.96200 0.99378 1.00843 1.22245 1.00726 0.98150 0.92463 1.19594 0.88755 0.92989 0.95788 0.95421 1.21181 1.04530 1.36735 0.92388 0.92585 1.24977 0.95864 0.95554 0.97570 1.69965 1.08812 1.39824 1.34404 0.86603 0.77940 0.77829 0.86028 1.19783 1.21118 1.21147 1.22446 0.99319 0.98323 0.93902 0.90801 0.90529 0.90761 0.78706 0.93061 0.90049 0.83879 0.93116 0.93779 0.91498 0.93576 0.93239 0.91948 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.82 36.01 0.35 -0.50 16 2 C 0.06 0.72 6.74 -84.23 -0.57 0.15 16 3 N -0.47 -6.04 10.53 -11.89 -0.13 -6.17 16 4 C 0.01 0.06 12.23 51.58 0.63 0.69 16 5 S 0.14 1.46 23.22 -107.50 -2.50 -1.04 16 6 C -0.21 -2.53 6.10 -35.92 -0.22 -2.74 16 7 C 0.13 1.66 5.43 -4.97 -0.03 1.64 16 8 N -0.68 -10.10 6.19 -106.80 -0.66 -10.76 16 9 C 0.08 1.41 3.23 -66.59 -0.21 1.19 16 10 H 0.07 1.09 7.83 -51.93 -0.41 0.69 16 11 C -0.15 -2.76 6.37 -25.61 -0.16 -2.92 16 12 C -0.10 -2.21 5.57 -25.07 -0.14 -2.35 16 13 C 0.05 1.16 2.82 -89.78 -0.25 0.91 16 14 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 15 C -0.51 -13.95 8.54 -34.44 -0.29 -14.25 16 16 H 0.06 1.53 7.78 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 18 N -0.89 -25.47 12.02 55.43 0.67 -24.80 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.10 -2.08 5.95 -25.07 -0.15 -2.23 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.07 0.79 7.27 -51.93 -0.38 0.41 16 27 H 0.20 1.32 8.06 -52.48 -0.42 0.89 16 28 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 29 H 0.08 0.98 8.07 -51.93 -0.42 0.57 16 30 H 0.34 5.18 8.10 -39.29 -0.32 4.87 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.71 7.59 -51.93 -0.39 0.31 16 33 H 0.07 1.67 7.37 -51.93 -0.38 1.29 16 34 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.06 1.33 7.95 -51.93 -0.41 0.91 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -29.23 315.43 -9.62 -38.85 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.59 Total: 1.67 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.14 Total: -18.80 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.12 Total: -41.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.50 Total: -1.04 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.23 -9.62 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294910011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.167 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds