Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31777 * 122.74958 * 2 1 4 4 C 1.29027 * 117.12261 * 180.33073 * 3 2 1 5 5 S 1.70980 * 110.16806 * 359.71495 * 4 3 2 6 6 C 1.33637 * 122.74639 * 179.79475 * 2 1 3 7 7 C 1.50699 * 126.03948 * 359.97438 * 6 2 1 8 8 N 1.46906 * 109.47140 * 89.71646 * 7 6 2 9 9 C 1.46898 * 110.99888 * 180.02562 * 8 7 6 10 10 H 1.08998 * 110.01844 * 325.05731 * 9 8 7 11 11 C 1.53875 * 110.03070 * 86.45489 * 9 8 7 12 12 C 1.54271 * 106.59672 * 119.28352 * 11 9 8 13 13 C 1.54883 * 104.19583 * 23.60715 * 12 11 9 14 14 H 1.08998 * 110.75537 * 80.37608 * 13 12 11 15 15 C 1.50705 * 110.75579 * 203.74288 * 13 12 11 16 16 H 1.07992 * 120.00049 * 118.54320 * 15 13 12 17 17 C 1.37881 * 119.99474 * 298.54845 * 15 13 12 18 18 N 1.31511 * 120.00620 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99521 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47517 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47602 * 120.00104 * 19 17 15 22 22 H 1.48505 * 109.47053 * 239.99793 * 19 17 15 23 23 C 1.54272 * 110.02956 * 203.61940 * 9 8 7 24 24 H 1.08999 * 109.47657 * 270.20438 * 1 2 3 25 25 H 1.09011 * 109.46889 * 30.20476 * 1 2 3 26 26 H 1.09002 * 109.47389 * 150.19842 * 1 2 3 27 27 H 1.08006 * 124.91681 * 179.67650 * 4 3 2 28 28 H 1.09000 * 109.47247 * 329.71667 * 7 6 2 29 29 H 1.09001 * 109.47358 * 209.71093 * 7 6 2 30 30 H 1.00902 * 110.99923 * 303.95945 * 8 7 6 31 31 H 1.09004 * 110.02794 * 238.56522 * 11 9 8 32 32 H 1.09000 * 110.03522 * 359.95175 * 11 9 8 33 33 H 1.09003 * 110.48520 * 142.28839 * 12 11 9 34 34 H 1.09004 * 110.48542 * 264.92691 * 12 11 9 35 35 H 0.96994 * 120.00293 * 179.97438 * 18 17 15 36 36 H 1.08996 * 110.48549 * 335.78315 * 23 9 8 37 37 H 1.08998 * 110.48478 * 98.42594 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0066 5 16 3.9332 -0.6732 -0.0059 6 6 2.2299 -1.1240 0.0040 7 6 1.6846 -2.5288 0.0096 8 7 1.5005 -2.9882 -1.3736 9 6 0.9683 -4.3569 -1.4073 10 1 1.3759 -4.9362 -0.5788 11 6 -0.5679 -4.3274 -1.3246 12 6 -1.0916 -4.9830 -2.6192 13 6 0.0779 -5.8834 -3.0889 14 1 0.0896 -6.8218 -2.5344 15 6 -0.0069 -6.1386 -4.5717 16 1 0.7906 -5.8115 -5.2223 17 6 -1.1026 -6.7897 -5.0976 18 7 -2.0736 -7.1884 -4.3053 19 14 -1.2073 -7.1067 -6.9355 20 1 0.0041 -6.5639 -7.6013 21 1 -1.2950 -8.5684 -7.1816 22 1 -2.4147 -6.4390 -7.4850 23 6 1.3246 -5.0294 -2.7493 24 1 -0.3634 0.0037 1.0276 25 1 -0.3633 0.8882 -0.5171 26 1 -0.3634 -0.8918 -0.5107 27 1 4.2060 1.8026 -0.0125 28 1 0.7260 -2.5445 0.5283 29 1 2.3854 -3.1886 0.5212 30 1 0.9054 -2.3563 -1.8882 31 1 -0.9060 -4.8931 -0.4564 32 1 -0.9186 -3.2975 -1.2586 33 1 -1.9765 -5.5845 -2.4112 34 1 -1.3131 -4.2234 -3.3689 35 1 -2.8445 -7.6461 -4.6753 36 1 1.4932 -4.2773 -3.5199 37 1 2.2030 -5.6648 -2.6362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294910011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = 9.322999 kcal Electronic energy + Delta-G solvation = -17748.536163 eV Core-core repulsion = 15036.875197 eV Total energy + Delta-G solvation = -2711.660966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87547 -39.44352 -36.19426 -34.26939 -32.54996 -30.09878 -29.62130 -27.84659 -26.05528 -25.38924 -24.27242 -21.09303 -20.93187 -19.73637 -19.04506 -18.37556 -16.90722 -16.63649 -16.53258 -15.97895 -15.64273 -15.15220 -14.64520 -14.42838 -14.18991 -13.91972 -13.48718 -13.40608 -13.34009 -13.24639 -12.98770 -12.76706 -12.41205 -12.32164 -11.96731 -11.82199 -11.50265 -11.32631 -10.97538 -10.77518 -10.57038 -10.44688 -10.21924 -9.67269 -9.26511 -8.09815 -6.19205 -0.22528 0.49628 0.87348 1.39828 1.42184 1.53340 1.81113 2.44593 3.20489 3.28672 3.40367 3.88210 4.02705 4.07027 4.16382 4.29066 4.31859 4.55648 4.61133 4.71417 4.76022 4.86104 4.89563 4.97375 5.05909 5.11093 5.18279 5.27526 5.34960 5.42786 5.47378 5.68313 5.95174 6.03569 6.19699 6.39198 6.46493 6.78418 6.91530 7.48208 8.98394 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.003822 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.631853 B = 7323.388131 C = 7472.952564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 N -0.501 5.501 4 C 0.014 3.986 5 S 0.158 5.842 6 C -0.227 4.227 7 C 0.138 3.862 8 N -0.679 5.679 9 C 0.098 3.902 10 H 0.083 0.917 11 C -0.142 4.142 12 C -0.090 4.090 13 C 0.036 3.964 14 H 0.000 1.000 15 C -0.530 4.530 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.950 3.050 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.093 4.093 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.229 0.771 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.341 0.659 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 14.003 11.571 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 N -0.215 5.215 4 C -0.283 4.283 5 S 0.412 5.588 6 C -0.349 4.349 7 C 0.007 3.993 8 N -0.310 5.310 9 C -0.012 4.012 10 H 0.101 0.899 11 C -0.181 4.181 12 C -0.128 4.128 13 C 0.017 3.983 14 H 0.018 0.982 15 C -0.568 4.568 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.776 3.224 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.131 4.131 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.245 0.755 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.492 13.751 11.508 20.775 hybrid contribution -2.139 -0.221 -0.889 2.327 sum 8.352 13.530 10.619 19.120 Atomic orbital electron populations 1.20399 0.86508 1.03389 1.03526 1.20510 0.98979 0.86439 1.02505 1.66224 1.06207 1.32066 1.17029 1.28859 0.95143 1.01386 1.02935 1.83952 1.05940 1.02598 1.66284 1.25725 0.96270 1.00185 1.12726 1.20258 0.99905 0.88498 0.90632 1.60708 1.54726 1.02956 1.12649 1.22103 0.92130 0.88887 0.98045 0.89904 1.22874 0.96720 1.00282 0.98232 1.22012 0.99036 0.97174 0.94613 1.19593 0.91744 0.92823 0.94108 0.98208 1.21550 1.04419 1.36786 0.94058 0.93193 1.25724 0.95611 0.95466 1.01773 1.70085 1.09238 1.40421 1.36096 0.85628 0.78009 0.77740 0.81021 1.19249 1.20655 1.20716 1.22270 0.97461 0.97670 0.95742 0.89654 0.90645 0.90753 0.75519 0.92109 0.89398 0.83973 0.92009 0.91537 0.94494 0.95321 0.93216 0.92938 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 9.82 71.24 0.70 -0.87 16 2 C 0.05 1.14 6.74 41.52 0.28 1.42 16 3 N -0.50 -11.95 10.53 -191.55 -2.02 -13.96 16 4 C 0.01 0.25 12.23 130.65 1.60 1.85 16 5 S 0.16 2.96 23.22 -56.49 -1.31 1.65 16 6 C -0.23 -5.12 6.10 24.64 0.15 -4.97 16 7 C 0.14 3.11 5.43 85.56 0.46 3.57 16 8 N -0.68 -18.83 6.19 -491.82 -3.04 -21.87 16 9 C 0.10 3.16 3.23 45.64 0.15 3.31 16 10 H 0.08 2.47 7.83 -2.39 -0.02 2.45 16 11 C -0.14 -4.85 6.37 31.32 0.20 -4.65 16 12 C -0.09 -4.15 5.57 31.67 0.18 -3.97 16 13 C 0.04 1.80 2.82 -10.25 -0.03 1.78 16 14 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 15 C -0.53 -29.58 8.54 25.60 0.22 -29.36 16 16 H 0.05 2.77 7.78 -2.91 -0.02 2.75 16 17 C 0.01 0.72 5.33 84.66 0.45 1.17 16 18 N -0.92 -53.66 12.02 21.45 0.26 -53.40 16 19 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C -0.09 -3.78 5.95 31.67 0.19 -3.59 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.07 1.45 7.27 -2.39 -0.02 1.43 16 27 H 0.23 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.06 1.27 7.40 -2.39 -0.02 1.26 16 29 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 30 H 0.34 9.70 8.10 -89.69 -0.73 8.98 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 1.98 7.59 -2.39 -0.02 1.97 16 33 H 0.04 1.89 7.37 -2.39 -0.02 1.87 16 34 H 0.03 1.37 8.04 -2.38 -0.02 1.35 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.05 2.22 7.95 -2.39 -0.02 2.20 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -63.34 315.43 0.79 -62.55 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.33 Total: 13.19 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 4.54 Total: -34.32 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -4.80 Total: -89.24 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.65 kcal Total: -63.34 0.79 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294910011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.869 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds