Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91641 * 2 1 4 4 C 1.31791 * 117.12054 * 179.81644 * 3 2 1 5 5 C 1.50700 * 122.74601 * 180.22754 * 4 3 2 6 6 N 1.46898 * 109.46729 * 275.26216 * 5 4 3 7 7 C 1.46901 * 111.00224 * 180.02562 * 6 5 4 8 8 H 1.09009 * 110.01427 * 325.70184 * 7 6 5 9 9 C 1.53876 * 110.03302 * 87.08887 * 7 6 5 10 10 C 1.54269 * 106.59677 * 119.28995 * 9 7 6 11 11 C 1.54885 * 104.19567 * 23.60885 * 10 9 7 12 12 H 1.09001 * 110.75359 * 80.56127 * 11 10 9 13 13 C 1.50697 * 110.75746 * 203.74251 * 11 10 9 14 14 H 1.08005 * 120.00110 * 118.54703 * 13 11 10 15 15 C 1.37876 * 120.00241 * 298.55149 * 13 11 10 16 16 N 1.31516 * 120.00453 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 119.99690 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.47089 * 90.00740 * 17 15 13 19 19 H 1.48505 * 109.47169 * 209.99823 * 17 15 13 20 20 H 1.48500 * 109.47342 * 330.00484 * 17 15 13 21 21 C 1.54265 * 110.03712 * 204.30876 * 7 6 5 22 22 C 1.33641 * 114.50066 * 0.46688 * 4 3 2 23 23 S 1.70982 * 124.91206 * 180.30300 * 2 1 3 24 24 H 1.08995 * 109.47411 * 179.72158 * 1 2 3 25 25 H 1.08998 * 109.46596 * 299.72097 * 1 2 3 26 26 H 1.09004 * 109.46950 * 59.71917 * 1 2 3 27 27 H 1.08998 * 109.47425 * 35.26103 * 5 4 3 28 28 H 1.09004 * 109.46979 * 155.26583 * 5 4 3 29 29 H 1.00908 * 111.00406 * 303.95345 * 6 5 4 30 30 H 1.08995 * 110.03289 * 238.57205 * 9 7 6 31 31 H 1.09001 * 110.03143 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.48590 * 142.29007 * 10 9 7 33 33 H 1.09001 * 110.48355 * 264.92999 * 10 9 7 34 34 H 0.97000 * 120.00145 * 179.97438 * 16 15 13 35 35 H 1.09003 * 110.48577 * 335.78788 * 21 7 6 36 36 H 1.09006 * 110.48332 * 98.42359 * 21 7 6 37 37 H 1.07992 * 126.03851 * 179.79090 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 0.0038 5 6 4.5308 2.0244 0.0093 6 7 4.7569 2.4819 -1.3682 7 6 5.7092 3.5999 -1.4021 8 1 5.5855 4.2224 -0.5159 9 6 7.1497 3.0633 -1.4723 10 6 7.7557 3.5985 -2.7862 11 6 6.9183 4.8622 -3.1037 12 1 7.2658 5.7131 -2.5177 13 6 6.9636 5.1767 -4.5768 14 1 6.0532 5.1743 -5.1577 15 6 8.1674 5.4675 -5.1829 16 7 8.2070 5.7414 -6.4686 17 14 9.7420 5.4723 -4.1780 18 1 10.3446 4.1151 -4.1956 19 1 10.6990 6.4462 -4.7619 20 1 9.4344 5.8592 -2.7777 21 6 5.4894 4.4431 -2.6751 22 6 3.9354 -0.4008 -0.0028 23 16 2.4856 -1.4021 -0.0074 24 1 -0.3634 -1.0276 -0.0050 25 1 -0.3632 0.5095 0.8925 26 1 -0.3633 0.5182 -0.8875 27 1 4.1275 2.8447 0.6030 28 1 5.4750 1.6929 0.4416 29 1 5.0700 1.7228 -1.9547 30 1 7.7252 3.4261 -0.6207 31 1 7.1421 1.9734 -1.4817 32 1 8.8039 3.8613 -2.6435 33 1 7.6512 2.8615 -3.5824 34 1 9.0538 5.9464 -6.8950 35 1 5.0183 3.8429 -3.4536 36 1 4.8844 5.3217 -2.4509 37 1 4.9545 -0.7583 -0.0044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294931700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = 35.366976 kcal Electronic energy + Delta-G solvation = -17552.760553 eV Core-core repulsion = 14842.228940 eV Total energy + Delta-G solvation = -2710.531614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04648 -38.06529 -34.66438 -32.59754 -31.72251 -28.82656 -28.29736 -27.59111 -25.35571 -23.23070 -22.47897 -19.86809 -19.75688 -19.18307 -17.80402 -16.67064 -15.73632 -15.47156 -15.14750 -14.69769 -14.31246 -13.91113 -13.75700 -13.23742 -13.05565 -12.68757 -12.66394 -12.48954 -12.42243 -12.14157 -11.63316 -11.19944 -10.92825 -10.80164 -10.30615 -10.00512 -9.84193 -9.73262 -9.69996 -9.53524 -9.34411 -8.94836 -8.89688 -8.49655 -8.07979 -6.02092 -4.00076 0.55846 1.20526 1.55957 2.64858 3.30752 3.39915 3.42137 3.89168 4.46024 4.52847 4.75533 5.02167 5.06449 5.15217 5.21612 5.24871 5.37502 5.41604 5.53416 5.57977 5.60042 5.75645 6.02961 6.06954 6.26511 6.40211 6.46939 6.58971 6.73618 6.84835 6.93577 7.21991 7.38191 7.60574 7.64877 7.69983 7.84151 8.60251 9.03333 9.61345 11.11502 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039889 B = 0.003619 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.782095 B = 7735.676884 C = 7940.833496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 N -0.455 5.455 4 C 0.085 3.915 5 C 0.131 3.869 6 N -0.673 5.673 7 C 0.083 3.917 8 H 0.071 0.929 9 C -0.151 4.151 10 C -0.128 4.128 11 C 0.011 3.989 12 H 0.030 0.970 13 C -0.506 4.506 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.883 3.117 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.266 1.266 21 C -0.090 4.090 22 C -0.259 4.259 23 S 0.103 5.897 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.341 0.659 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 -14.638 16.077 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.230 4.230 3 N -0.170 5.170 4 C -0.048 4.048 5 C -0.001 4.001 6 N -0.304 5.304 7 C -0.026 4.026 8 H 0.090 0.910 9 C -0.190 4.190 10 C -0.166 4.166 11 C -0.008 4.008 12 H 0.049 0.951 13 C -0.544 4.544 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.713 3.287 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.191 1.191 21 C -0.128 4.128 22 C -0.399 4.399 23 S 0.357 5.643 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.160 0.840 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.699 -14.749 15.919 24.654 hybrid contribution 2.585 0.091 0.577 2.651 sum -9.114 -14.658 16.496 23.876 Atomic orbital electron populations 1.20423 0.85212 1.03327 1.04602 1.27110 1.01805 0.90745 1.03306 1.66054 1.04551 1.31174 1.15213 1.20246 0.90188 0.93796 1.00549 1.20460 0.93662 0.93610 0.92364 1.60647 1.50365 1.11681 1.07743 1.22382 0.88399 0.91727 1.00105 0.91047 1.22907 0.97559 0.99038 0.99495 1.22766 0.98369 1.00498 0.94951 1.20117 0.91107 0.92418 0.97177 0.95149 1.21036 0.95232 1.46461 0.91671 0.90809 1.25011 0.98906 0.94663 0.94653 1.69909 1.26230 1.48192 1.09965 0.86888 0.83564 0.77487 0.80784 1.20632 1.22354 1.19091 1.22269 0.98489 0.97501 0.94580 1.26836 1.03072 0.95891 1.14110 1.83889 0.98226 1.13291 1.68921 0.90408 0.89450 0.89215 0.89464 0.93756 0.84041 0.92800 0.93099 0.93872 0.91574 0.92794 0.91285 0.92810 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.47 36.01 0.38 -0.17 16 2 C 0.05 0.53 7.39 -13.46 -0.10 0.43 16 3 N -0.46 -6.26 10.53 -8.05 -0.08 -6.35 16 4 C 0.08 1.10 6.25 -84.22 -0.53 0.57 16 5 C 0.13 1.71 5.95 -4.98 -0.03 1.68 16 6 N -0.67 -10.30 6.20 -106.80 -0.66 -10.96 16 7 C 0.08 1.39 3.23 -66.59 -0.21 1.18 16 8 H 0.07 1.13 7.82 -51.92 -0.41 0.73 16 9 C -0.15 -2.53 6.40 -25.61 -0.16 -2.70 16 10 C -0.13 -2.71 5.08 -25.07 -0.13 -2.84 16 11 C 0.01 0.26 2.30 -89.75 -0.21 0.05 16 12 H 0.03 0.73 7.37 -51.93 -0.38 0.35 16 13 C -0.51 -14.36 9.12 -34.44 -0.31 -14.67 16 14 H 0.07 2.28 8.03 -52.48 -0.42 1.85 16 15 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 16 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 17 Si 0.88 22.10 24.46 -169.99 -4.16 17.94 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.27 -6.36 6.48 56.52 0.37 -6.00 16 21 C -0.09 -1.84 5.96 -25.04 -0.15 -1.98 16 22 C -0.26 -2.81 11.11 29.12 0.32 -2.49 16 23 S 0.10 0.96 23.17 -107.50 -2.49 -1.53 16 24 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.34 5.14 8.16 -39.29 -0.32 4.82 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.76 7.58 -51.93 -0.39 0.37 16 32 H 0.04 0.94 4.91 -51.93 -0.25 0.68 16 33 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.07 1.49 7.95 -51.93 -0.41 1.08 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -31.71 310.78 -8.72 -40.43 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.55 Total: 2.10 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.23 Total: -19.03 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.03 Total: -44.58 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.16 Total: 17.94 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.71 -8.72 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294931700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.793 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds