Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91641 * 2 1 4 4 C 1.31791 * 117.12054 * 179.81644 * 3 2 1 5 5 C 1.50700 * 122.74601 * 180.22754 * 4 3 2 6 6 N 1.46898 * 109.46729 * 275.26216 * 5 4 3 7 7 C 1.46901 * 111.00224 * 180.02562 * 6 5 4 8 8 H 1.09009 * 110.01427 * 325.70184 * 7 6 5 9 9 C 1.53876 * 110.03302 * 87.08887 * 7 6 5 10 10 C 1.54269 * 106.59677 * 119.28995 * 9 7 6 11 11 C 1.54885 * 104.19567 * 23.60885 * 10 9 7 12 12 H 1.09001 * 110.75359 * 80.56127 * 11 10 9 13 13 C 1.50697 * 110.75746 * 203.74251 * 11 10 9 14 14 H 1.08005 * 120.00110 * 118.54703 * 13 11 10 15 15 C 1.37876 * 120.00241 * 298.55149 * 13 11 10 16 16 N 1.31516 * 120.00453 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 119.99690 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.47089 * 90.00740 * 17 15 13 19 19 H 1.48505 * 109.47169 * 209.99823 * 17 15 13 20 20 H 1.48500 * 109.47342 * 330.00484 * 17 15 13 21 21 C 1.54265 * 110.03712 * 204.30876 * 7 6 5 22 22 C 1.33641 * 114.50066 * 0.46688 * 4 3 2 23 23 S 1.70982 * 124.91206 * 180.30300 * 2 1 3 24 24 H 1.08995 * 109.47411 * 179.72158 * 1 2 3 25 25 H 1.08998 * 109.46596 * 299.72097 * 1 2 3 26 26 H 1.09004 * 109.46950 * 59.71917 * 1 2 3 27 27 H 1.08998 * 109.47425 * 35.26103 * 5 4 3 28 28 H 1.09004 * 109.46979 * 155.26583 * 5 4 3 29 29 H 1.00908 * 111.00406 * 303.95345 * 6 5 4 30 30 H 1.08995 * 110.03289 * 238.57205 * 9 7 6 31 31 H 1.09001 * 110.03143 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.48590 * 142.29007 * 10 9 7 33 33 H 1.09001 * 110.48355 * 264.92999 * 10 9 7 34 34 H 0.97000 * 120.00145 * 179.97438 * 16 15 13 35 35 H 1.09003 * 110.48577 * 335.78788 * 21 7 6 36 36 H 1.09006 * 110.48332 * 98.42359 * 21 7 6 37 37 H 1.07992 * 126.03851 * 179.79090 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 0.0038 5 6 4.5308 2.0244 0.0093 6 7 4.7569 2.4819 -1.3682 7 6 5.7092 3.5999 -1.4021 8 1 5.5855 4.2224 -0.5159 9 6 7.1497 3.0633 -1.4723 10 6 7.7557 3.5985 -2.7862 11 6 6.9183 4.8622 -3.1037 12 1 7.2658 5.7131 -2.5177 13 6 6.9636 5.1767 -4.5768 14 1 6.0532 5.1743 -5.1577 15 6 8.1674 5.4675 -5.1829 16 7 8.2070 5.7414 -6.4686 17 14 9.7420 5.4723 -4.1780 18 1 10.3446 4.1151 -4.1956 19 1 10.6990 6.4462 -4.7619 20 1 9.4344 5.8592 -2.7777 21 6 5.4894 4.4431 -2.6751 22 6 3.9354 -0.4008 -0.0028 23 16 2.4856 -1.4021 -0.0074 24 1 -0.3634 -1.0276 -0.0050 25 1 -0.3632 0.5095 0.8925 26 1 -0.3633 0.5182 -0.8875 27 1 4.1275 2.8447 0.6030 28 1 5.4750 1.6929 0.4416 29 1 5.0700 1.7228 -1.9547 30 1 7.7252 3.4261 -0.6207 31 1 7.1421 1.9734 -1.4817 32 1 8.8039 3.8613 -2.6435 33 1 7.6512 2.8615 -3.5824 34 1 9.0538 5.9464 -6.8950 35 1 5.0183 3.8429 -3.4536 36 1 4.8844 5.3217 -2.4509 37 1 4.9545 -0.7583 -0.0044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294931700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = 13.105871 kcal Electronic energy + Delta-G solvation = -17553.725867 eV Core-core repulsion = 14842.228940 eV Total energy + Delta-G solvation = -2711.496928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90815 -39.52141 -36.03241 -34.33277 -32.92829 -30.16549 -29.64438 -28.79180 -26.65593 -24.97148 -23.32957 -21.27956 -21.01790 -20.56789 -18.83672 -18.58832 -17.00493 -16.71936 -16.31194 -15.94932 -15.57389 -15.17604 -14.83299 -14.71194 -14.37361 -14.06268 -13.91082 -13.65008 -13.34188 -13.10360 -12.99546 -12.79117 -12.47481 -12.22192 -11.99293 -11.61765 -11.52206 -11.45670 -11.17201 -11.02818 -10.69002 -10.53770 -10.32667 -9.69720 -9.24376 -8.28010 -6.31219 -0.22713 0.46587 0.77274 1.32053 1.36373 1.47326 1.77368 2.35056 3.07317 3.14686 3.39624 3.88879 3.92857 4.01102 4.14654 4.26351 4.37301 4.51811 4.55327 4.66125 4.68840 4.71759 4.83987 4.88110 4.97303 5.00173 5.03157 5.06958 5.17092 5.24972 5.32710 5.50967 5.66607 5.80876 6.18295 6.34037 6.46463 6.75782 6.88424 7.34009 8.89471 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039889 B = 0.003619 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.782095 B = 7735.676884 C = 7940.833496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.498 5.498 4 C 0.059 3.941 5 C 0.136 3.864 6 N -0.684 5.684 7 C 0.097 3.903 8 H 0.088 0.912 9 C -0.138 4.138 10 C -0.127 4.127 11 C 0.005 3.995 12 H 0.031 0.969 13 C -0.514 4.514 14 H 0.026 0.974 15 C 0.008 3.992 16 N -0.955 5.955 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.298 1.298 20 H -0.243 1.243 21 C -0.088 4.088 22 C -0.263 4.263 23 S 0.150 5.850 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.342 0.658 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 -16.581 18.969 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.244 4.244 3 N -0.214 5.214 4 C -0.073 4.073 5 C 0.005 3.995 6 N -0.315 5.315 7 C -0.013 4.013 8 H 0.106 0.894 9 C -0.178 4.178 10 C -0.165 4.165 11 C -0.015 4.015 12 H 0.049 0.951 13 C -0.552 4.552 14 H 0.045 0.955 15 C -0.188 4.188 16 N -0.596 5.596 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.225 1.225 20 H -0.167 1.167 21 C -0.126 4.126 22 C -0.403 4.403 23 S 0.405 5.595 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.067 -16.713 18.836 27.506 hybrid contribution 2.217 0.651 -0.408 2.346 sum -8.850 -16.062 18.428 25.998 Atomic orbital electron populations 1.20576 0.83238 1.05052 1.04783 1.27672 1.03262 0.91062 1.02433 1.66062 1.05325 1.32988 1.16976 1.20268 0.90155 0.94466 1.02387 1.20428 0.94749 0.93707 0.90642 1.60499 1.49922 1.11588 1.09540 1.22133 0.88921 0.92010 0.98220 0.89433 1.22833 0.96981 1.00481 0.97458 1.22620 0.98082 0.98720 0.97072 1.20086 0.93938 0.93779 0.93655 0.95094 1.21362 0.93600 1.46001 0.94276 0.95516 1.25938 1.02912 0.94289 0.95708 1.70074 1.27347 1.50035 1.12164 0.85804 0.78517 0.78096 0.79983 1.19094 1.22504 1.16698 1.22157 0.96402 0.97930 0.96125 1.27148 1.04742 0.95688 1.12716 1.83693 0.96682 1.11585 1.67573 0.87922 0.88756 0.89457 0.90228 0.91571 0.83941 0.90479 0.90724 0.93853 0.93271 0.92671 0.93549 0.93117 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.47 71.24 0.75 -0.23 16 2 C 0.03 0.67 7.39 88.52 0.65 1.33 16 3 N -0.50 -13.17 10.53 -179.39 -1.89 -15.06 16 4 C 0.06 1.43 6.25 41.52 0.26 1.69 16 5 C 0.14 3.24 5.95 85.56 0.51 3.75 16 6 N -0.68 -19.72 6.20 -491.82 -3.05 -22.76 16 7 C 0.10 3.02 3.23 45.64 0.15 3.17 16 8 H 0.09 2.50 7.82 -2.38 -0.02 2.48 16 9 C -0.14 -4.15 6.40 31.32 0.20 -3.95 16 10 C -0.13 -5.13 5.08 31.67 0.16 -4.97 16 11 C 0.00 0.21 2.30 -10.23 -0.02 0.19 16 12 H 0.03 1.45 7.37 -2.39 -0.02 1.43 16 13 C -0.51 -30.27 9.12 25.60 0.23 -30.04 16 14 H 0.03 1.76 8.03 -2.91 -0.02 1.73 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.96 -61.38 13.96 21.45 0.30 -61.08 16 17 Si 0.95 45.35 24.46 68.60 1.68 47.03 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.24 -10.64 6.48 99.48 0.64 -10.00 16 21 C -0.09 -3.58 5.96 31.69 0.19 -3.39 16 22 C -0.26 -5.02 11.11 66.78 0.74 -4.28 16 23 S 0.15 2.42 23.17 -56.49 -1.31 1.11 16 24 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.07 1.28 8.08 -2.38 -0.02 1.26 16 29 H 0.34 9.69 8.16 -89.69 -0.73 8.96 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 32 H 0.04 1.74 4.91 -2.39 -0.01 1.73 16 33 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 34 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.05 2.07 7.95 -2.39 -0.02 2.05 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.19 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -71.24 310.78 0.28 -70.96 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.27 Total: 15.61 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 4.28 Total: -35.81 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -4.64 Total: -98.90 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.68 Total: 47.03 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.11 kcal Total: -71.24 0.28 -70.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294931700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.063 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds