Wall clock time and date at job start Mon Mar 30 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29029 * 124.91082 * 2 1 4 4 C 1.31784 * 117.11934 * 179.97438 * 3 2 1 5 5 C 1.33639 * 114.50435 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.03868 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46585 * 90.00552 * 6 5 4 8 8 C 1.46904 * 110.99504 * 180.02562 * 7 6 5 9 9 H 1.09002 * 110.01574 * 325.69465 * 8 7 6 10 10 C 1.53875 * 110.03446 * 87.09253 * 8 7 6 11 11 C 1.54262 * 106.59688 * 119.28410 * 10 8 7 12 12 C 1.54886 * 104.19884 * 23.60953 * 11 10 8 13 13 H 1.08993 * 110.75715 * 80.55686 * 12 11 10 14 14 C 1.50703 * 110.75747 * 203.74213 * 12 11 10 15 15 H 1.08000 * 120.00206 * 118.54351 * 14 12 11 16 16 C 1.37875 * 119.99842 * 298.54849 * 14 12 11 17 17 N 1.31512 * 119.99561 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00185 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.46695 * 90.00277 * 18 16 14 20 20 H 1.48501 * 109.47131 * 210.00003 * 18 16 14 21 21 H 1.48498 * 109.47070 * 330.00704 * 18 16 14 22 22 C 1.54265 * 110.02932 * 204.31131 * 8 7 6 23 23 S 1.70976 * 124.91946 * 179.69231 * 2 1 3 24 24 H 1.08999 * 109.46995 * 90.02763 * 1 2 3 25 25 H 1.08994 * 109.46790 * 210.02449 * 1 2 3 26 26 H 1.08997 * 109.47305 * 330.02890 * 1 2 3 27 27 H 1.08000 * 122.74782 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47141 * 210.00504 * 6 5 4 29 29 H 1.08994 * 109.47179 * 330.00648 * 6 5 4 30 30 H 1.00898 * 111.00051 * 56.04935 * 7 6 5 31 31 H 1.09001 * 110.02825 * 238.56293 * 10 8 7 32 32 H 1.09002 * 110.03072 * 359.97438 * 10 8 7 33 33 H 1.09007 * 110.48370 * 142.28701 * 11 10 8 34 34 H 1.09003 * 110.48808 * 264.92611 * 11 10 8 35 35 H 0.97008 * 119.99802 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.48644 * 335.77701 * 22 8 7 37 37 H 1.09003 * 110.49290 * 98.42531 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9355 -0.4005 0.0015 6 6 5.3575 -0.8992 0.0018 7 7 5.8196 -1.0602 1.3869 8 6 7.2056 -1.5456 1.4264 9 1 7.3881 -2.2216 0.5910 10 6 8.1820 -0.3578 1.3664 11 6 9.0097 -0.4017 2.6674 12 6 8.9304 -1.8813 3.1184 13 1 9.6429 -2.4927 2.5647 14 6 9.1670 -2.0009 4.6020 15 1 8.3948 -2.4024 5.2414 16 6 10.3694 -1.5976 5.1430 17 7 10.5756 -1.7015 6.4377 18 14 11.7053 -0.9037 4.0370 19 1 11.5437 0.5686 3.9296 20 1 13.0374 -1.2145 4.6151 21 1 11.5968 -1.5133 2.6873 22 6 7.4737 -2.2709 2.7612 23 16 2.4858 -1.4019 0.0075 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.2531 1.7002 0.0002 28 1 5.4058 -1.8597 -0.5114 29 1 5.9949 -0.1801 -0.5126 30 1 5.2068 -1.6729 1.9037 31 1 8.8390 -0.4579 0.5024 32 1 7.6275 0.5787 1.3076 33 1 10.0437 -0.1175 2.4715 34 1 8.5700 0.2511 3.4215 35 1 11.4217 -1.4181 6.8183 36 1 6.7857 -1.9204 3.5306 37 1 7.3869 -3.3499 2.6334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295016729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:54 Heat of formation + Delta-G solvation = 33.940265 kcal Electronic energy + Delta-G solvation = -17465.078496 eV Core-core repulsion = 14754.485015 eV Total energy + Delta-G solvation = -2710.593481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83205 -38.11768 -35.00811 -32.60722 -31.82756 -29.46082 -28.38374 -26.88437 -24.65390 -23.41781 -23.14202 -19.75020 -19.39220 -19.13301 -18.12443 -16.75805 -15.79494 -15.41813 -15.20884 -14.81777 -14.46692 -14.04344 -13.73212 -13.60489 -12.93561 -12.79713 -12.69867 -12.46105 -12.27465 -12.13937 -11.38002 -11.28459 -10.92299 -10.72107 -10.37093 -10.08272 -9.91723 -9.74993 -9.68023 -9.44539 -9.33609 -8.97062 -8.89227 -8.50570 -8.27423 -6.03585 -4.01945 0.54285 1.16320 1.58413 2.70786 3.32172 3.40317 3.42308 3.98681 4.37433 4.45612 4.76014 4.84272 5.01844 5.12756 5.19238 5.24641 5.32150 5.46039 5.52115 5.57225 5.67289 5.70319 6.04769 6.07595 6.28463 6.36290 6.49706 6.62061 6.66409 6.80707 6.92943 7.12688 7.32124 7.51097 7.59566 7.60723 7.81982 8.56832 9.00212 9.59726 11.09941 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042975 B = 0.003611 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.386547 B = 7752.013465 C = 7911.989479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 N -0.475 5.475 4 C 0.052 3.948 5 C -0.210 4.210 6 C 0.135 3.865 7 N -0.676 5.676 8 C 0.082 3.918 9 H 0.039 0.961 10 C -0.113 4.113 11 C -0.127 4.127 12 C 0.016 3.984 13 H 0.030 0.970 14 C -0.508 4.508 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.884 3.116 19 H -0.278 1.278 20 H -0.297 1.297 21 H -0.266 1.266 22 C -0.107 4.107 23 S 0.111 5.889 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.340 0.660 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 1.283 -16.075 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.237 4.237 3 N -0.190 5.190 4 C -0.099 4.099 5 C -0.331 4.331 6 C 0.004 3.996 7 N -0.308 5.308 8 C -0.027 4.027 9 H 0.057 0.943 10 C -0.152 4.152 11 C -0.165 4.165 12 C -0.003 4.003 13 H 0.048 0.952 14 C -0.546 4.546 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.191 1.191 22 C -0.145 4.145 23 S 0.364 5.636 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.193 0.807 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.159 0.841 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.818 1.421 -15.859 23.159 hybrid contribution 1.344 0.289 -0.718 1.551 sum -15.474 1.710 -16.577 22.741 Atomic orbital electron populations 1.20425 0.85341 1.04205 1.03706 1.26997 1.01702 0.91022 1.04001 1.66296 1.05077 1.31573 1.16015 1.21696 0.90757 0.96063 1.01385 1.25934 0.99392 0.96183 1.11633 1.20321 0.87801 0.99674 0.91825 1.60747 1.03772 1.55367 1.10892 1.22336 0.86694 0.95339 0.98365 0.94319 1.22204 0.96699 0.97868 0.98379 1.22760 0.97327 1.00978 0.95447 1.20037 0.91811 0.91414 0.97078 0.95196 1.21005 1.01190 1.41978 0.90436 0.90935 1.24998 0.98156 0.95278 0.94744 1.69909 1.24977 1.48349 1.11015 0.86875 0.80947 0.79696 0.81144 1.20432 1.22395 1.19101 1.22494 1.00173 0.97618 0.94246 1.83962 0.98224 1.12660 1.68731 0.89751 0.90157 0.89309 0.80658 0.94226 0.88918 0.84110 0.93361 0.91636 0.93935 0.91366 0.92757 0.90967 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.14 16 2 C 0.04 0.43 7.39 -13.45 -0.10 0.33 16 3 N -0.47 -6.08 10.54 -11.86 -0.13 -6.21 16 4 C 0.05 0.64 11.25 -19.18 -0.22 0.43 16 5 C -0.21 -2.45 6.11 -35.92 -0.22 -2.67 16 6 C 0.14 1.59 6.04 -4.97 -0.03 1.56 16 7 N -0.68 -9.58 6.15 -106.81 -0.66 -10.24 16 8 C 0.08 1.31 3.24 -66.59 -0.22 1.10 16 9 H 0.04 0.58 7.82 -51.93 -0.41 0.18 16 10 C -0.11 -1.95 6.52 -25.61 -0.17 -2.12 16 11 C -0.13 -2.73 5.08 -25.08 -0.13 -2.85 16 12 C 0.02 0.37 2.30 -89.74 -0.21 0.16 16 13 H 0.03 0.71 7.37 -51.93 -0.38 0.33 16 14 C -0.51 -14.26 9.12 -34.44 -0.31 -14.58 16 15 H 0.07 2.20 8.03 -52.49 -0.42 1.78 16 16 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 17 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 18 Si 0.88 22.03 24.46 -169.99 -4.16 17.88 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.27 -6.32 6.48 56.52 0.37 -5.96 16 22 C -0.11 -2.06 5.68 -25.03 -0.14 -2.21 16 23 S 0.11 1.11 23.18 -107.50 -2.49 -1.38 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 29 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.34 4.71 8.33 -39.29 -0.33 4.39 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 33 H 0.04 0.93 4.91 -51.93 -0.25 0.67 16 34 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.46 7.87 -51.93 -0.41 1.05 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -31.16 311.16 -9.00 -40.17 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.58 Total: 1.31 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.46 Total: -19.09 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.01 Total: -43.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.16 Total: 17.88 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.16 -9.00 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295016729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.106 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds