Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29029 * 124.91082 * 2 1 4 4 C 1.31784 * 117.11934 * 179.97438 * 3 2 1 5 5 C 1.33639 * 114.50435 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.03868 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46585 * 90.00552 * 6 5 4 8 8 C 1.46904 * 110.99504 * 180.02562 * 7 6 5 9 9 H 1.09002 * 110.01574 * 325.69465 * 8 7 6 10 10 C 1.53875 * 110.03446 * 87.09253 * 8 7 6 11 11 C 1.54262 * 106.59688 * 119.28410 * 10 8 7 12 12 C 1.54886 * 104.19884 * 23.60953 * 11 10 8 13 13 H 1.08993 * 110.75715 * 80.55686 * 12 11 10 14 14 C 1.50703 * 110.75747 * 203.74213 * 12 11 10 15 15 H 1.08000 * 120.00206 * 118.54351 * 14 12 11 16 16 C 1.37875 * 119.99842 * 298.54849 * 14 12 11 17 17 N 1.31512 * 119.99561 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00185 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.46695 * 90.00277 * 18 16 14 20 20 H 1.48501 * 109.47131 * 210.00003 * 18 16 14 21 21 H 1.48498 * 109.47070 * 330.00704 * 18 16 14 22 22 C 1.54265 * 110.02932 * 204.31131 * 8 7 6 23 23 S 1.70976 * 124.91946 * 179.69231 * 2 1 3 24 24 H 1.08999 * 109.46995 * 90.02763 * 1 2 3 25 25 H 1.08994 * 109.46790 * 210.02449 * 1 2 3 26 26 H 1.08997 * 109.47305 * 330.02890 * 1 2 3 27 27 H 1.08000 * 122.74782 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47141 * 210.00504 * 6 5 4 29 29 H 1.08994 * 109.47179 * 330.00648 * 6 5 4 30 30 H 1.00898 * 111.00051 * 56.04935 * 7 6 5 31 31 H 1.09001 * 110.02825 * 238.56293 * 10 8 7 32 32 H 1.09002 * 110.03072 * 359.97438 * 10 8 7 33 33 H 1.09007 * 110.48370 * 142.28701 * 11 10 8 34 34 H 1.09003 * 110.48808 * 264.92611 * 11 10 8 35 35 H 0.97008 * 119.99802 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.48644 * 335.77701 * 22 8 7 37 37 H 1.09003 * 110.49290 * 98.42531 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9355 -0.4005 0.0015 6 6 5.3575 -0.8992 0.0018 7 7 5.8196 -1.0602 1.3869 8 6 7.2056 -1.5456 1.4264 9 1 7.3881 -2.2216 0.5910 10 6 8.1820 -0.3578 1.3664 11 6 9.0097 -0.4017 2.6674 12 6 8.9304 -1.8813 3.1184 13 1 9.6429 -2.4927 2.5647 14 6 9.1670 -2.0009 4.6020 15 1 8.3948 -2.4024 5.2414 16 6 10.3694 -1.5976 5.1430 17 7 10.5756 -1.7015 6.4377 18 14 11.7053 -0.9037 4.0370 19 1 11.5437 0.5686 3.9296 20 1 13.0374 -1.2145 4.6151 21 1 11.5968 -1.5133 2.6873 22 6 7.4737 -2.2709 2.7612 23 16 2.4858 -1.4019 0.0075 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.2531 1.7002 0.0002 28 1 5.4058 -1.8597 -0.5114 29 1 5.9949 -0.1801 -0.5126 30 1 5.2068 -1.6729 1.9037 31 1 8.8390 -0.4579 0.5024 32 1 7.6275 0.5787 1.3076 33 1 10.0437 -0.1175 2.4715 34 1 8.5700 0.2511 3.4215 35 1 11.4217 -1.4181 6.8183 36 1 6.7857 -1.9204 3.5306 37 1 7.3869 -3.3499 2.6334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295016729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = 12.643593 kcal Electronic energy + Delta-G solvation = -17466.001989 eV Core-core repulsion = 14754.485015 eV Total energy + Delta-G solvation = -2711.516974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68259 -39.53200 -36.30246 -34.39951 -32.94923 -30.58501 -29.96999 -28.23087 -25.75713 -25.01960 -24.08145 -21.24359 -20.81289 -20.25674 -18.94624 -18.73879 -16.98575 -16.85495 -16.49520 -15.98562 -15.46281 -15.28825 -14.85698 -14.80064 -14.51631 -14.10425 -13.95307 -13.50643 -13.33845 -13.12847 -12.88395 -12.74441 -12.27794 -12.24597 -11.96778 -11.65644 -11.54176 -11.45965 -11.15306 -11.00675 -10.68176 -10.60652 -10.26645 -9.71670 -9.35408 -8.27975 -6.30755 -0.27564 0.37995 0.76646 1.34064 1.36487 1.47497 1.84395 2.35563 3.08091 3.23301 3.33522 3.79957 3.93026 3.99610 4.14127 4.20653 4.24888 4.61231 4.62948 4.65400 4.67658 4.76364 4.81100 4.85810 4.97349 5.03576 5.07449 5.13810 5.23735 5.27105 5.34789 5.46144 5.67496 5.81097 6.15687 6.34239 6.39320 6.75864 6.77872 7.34626 8.89337 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042975 B = 0.003611 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.386547 B = 7752.013465 C = 7911.989479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.037 3.963 3 N -0.508 5.508 4 C 0.040 3.960 5 C -0.225 4.225 6 C 0.140 3.860 7 N -0.684 5.684 8 C 0.095 3.905 9 H 0.062 0.938 10 C -0.105 4.105 11 C -0.127 4.127 12 C 0.007 3.993 13 H 0.033 0.967 14 C -0.513 4.513 15 H 0.029 0.971 16 C 0.008 3.992 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.298 1.298 21 H -0.241 1.241 22 C -0.103 4.103 23 S 0.139 5.861 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.342 0.658 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.053 0.947 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 1.317 -19.071 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.240 4.240 3 N -0.224 5.224 4 C -0.111 4.111 5 C -0.346 4.346 6 C 0.009 3.991 7 N -0.317 5.317 8 C -0.014 4.014 9 H 0.080 0.920 10 C -0.143 4.143 11 C -0.165 4.165 12 C -0.012 4.012 13 H 0.051 0.949 14 C -0.551 4.551 15 H 0.047 0.953 16 C -0.188 4.188 17 N -0.596 5.596 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.225 1.225 21 H -0.165 1.165 22 C -0.141 4.141 23 S 0.393 5.607 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.196 0.804 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.467 1.445 -18.880 25.761 hybrid contribution 1.394 0.220 0.301 1.443 sum -16.074 1.665 -18.579 24.623 Atomic orbital electron populations 1.20620 0.82970 1.05168 1.05115 1.27656 1.03242 0.90857 1.02283 1.66340 1.05484 1.32814 1.17734 1.21859 0.91007 0.96648 1.01634 1.25959 1.00013 0.96382 1.12265 1.20324 0.87899 1.00555 0.90318 1.60671 1.02935 1.55339 1.12729 1.22107 0.87674 0.94849 0.96797 0.91981 1.22161 0.96732 0.98841 0.96602 1.22633 0.97987 0.98691 0.97201 1.20034 0.94454 0.93152 0.93544 0.94916 1.21362 1.00008 1.40739 0.93018 0.95253 1.25916 1.00936 0.95880 0.96103 1.70069 1.25899 1.50364 1.13273 0.85836 0.77281 0.79404 0.80081 1.19438 1.22538 1.16500 1.22370 0.97154 0.98713 0.95836 1.83822 0.97119 1.11743 1.68027 0.87999 0.88245 0.89270 0.80410 0.92838 0.88188 0.83986 0.90919 0.90779 0.94050 0.93740 0.92709 0.92869 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.46 71.24 0.75 -0.15 16 2 C 0.04 0.71 7.39 88.52 0.65 1.37 16 3 N -0.51 -12.45 10.54 -191.44 -2.02 -14.47 16 4 C 0.04 0.93 11.25 83.66 0.94 1.87 16 5 C -0.22 -4.80 6.11 24.64 0.15 -4.65 16 6 C 0.14 2.87 6.04 85.56 0.52 3.39 16 7 N -0.68 -17.75 6.15 -491.82 -3.02 -20.77 16 8 C 0.09 2.77 3.24 45.64 0.15 2.92 16 9 H 0.06 1.58 7.82 -2.39 -0.02 1.56 16 10 C -0.11 -3.28 6.52 31.32 0.20 -3.08 16 11 C -0.13 -5.24 5.08 31.67 0.16 -5.08 16 12 C 0.01 0.33 2.30 -10.22 -0.02 0.31 16 13 H 0.03 1.49 7.37 -2.39 -0.02 1.47 16 14 C -0.51 -29.65 9.12 25.60 0.23 -29.42 16 15 H 0.03 1.88 8.03 -2.91 -0.02 1.86 16 16 C 0.01 0.47 5.46 84.65 0.46 0.93 16 17 N -0.96 -61.02 13.96 21.45 0.30 -60.72 16 18 Si 0.95 45.33 24.46 68.60 1.68 47.01 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 21 H -0.24 -10.50 6.48 99.48 0.64 -9.85 16 22 C -0.10 -3.84 5.68 31.70 0.18 -3.66 16 23 S 0.14 2.48 23.18 -56.49 -1.31 1.17 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16 29 H 0.10 1.92 8.12 -2.39 -0.02 1.90 16 30 H 0.34 8.81 8.33 -89.70 -0.75 8.06 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 33 H 0.04 1.69 4.91 -2.38 -0.01 1.68 16 34 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 35 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 36 H 0.05 2.17 7.87 -2.39 -0.02 2.15 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -69.10 311.16 0.25 -68.85 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.25 Total: 14.19 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.37 Total: -35.26 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -4.74 Total: -95.96 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.68 Total: 47.01 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.31 Total: 1.17 kcal Total: -69.10 0.25 -68.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295016729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.489 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds