Wall clock time and date at job start Mon Mar 30 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47280 * 2 1 4 4 N 1.46899 * 109.46835 * 240.00403 * 2 1 3 5 5 C 1.46900 * 111.00499 * 84.99985 * 4 2 1 6 6 H 1.09001 * 110.01134 * 325.06206 * 5 4 2 7 7 C 1.53874 * 110.03270 * 86.44617 * 5 4 2 8 8 C 1.54276 * 106.59701 * 119.28691 * 7 5 4 9 9 C 1.54892 * 104.19218 * 23.61529 * 8 7 5 10 10 H 1.08998 * 110.75538 * 80.55387 * 9 8 7 11 11 C 1.50696 * 110.75499 * 203.74217 * 9 8 7 12 12 H 1.08004 * 120.00202 * 118.54133 * 11 9 8 13 13 C 1.37876 * 120.00205 * 298.54572 * 11 9 8 14 14 N 1.31518 * 119.99815 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00517 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46902 * 59.99785 * 15 13 11 17 17 H 1.48502 * 109.47143 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46709 * 299.99697 * 15 13 11 19 19 C 1.54264 * 110.03575 * 203.61712 * 5 4 2 20 20 C 1.50695 * 109.47234 * 120.00588 * 2 1 3 21 21 C 1.33643 * 122.74824 * 274.99760 * 20 2 1 22 22 S 1.76199 * 107.92569 * 179.97438 * 21 20 2 23 23 C 1.70974 * 90.28083 * 0.02562 * 22 21 20 24 24 N 1.29023 * 110.17232 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47152 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47192 * 299.99311 * 1 2 3 27 27 H 1.09001 * 109.47300 * 59.99893 * 1 2 3 28 28 H 1.00909 * 111.00103 * 208.95509 * 4 2 1 29 29 H 1.08994 * 110.03859 * 238.57316 * 7 5 4 30 30 H 1.09004 * 110.03152 * 0.02562 * 7 5 4 31 31 H 1.08997 * 110.48303 * 142.28972 * 8 7 5 32 32 H 1.08993 * 110.48914 * 264.80699 * 8 7 5 33 33 H 0.96998 * 120.00362 * 180.02562 * 14 13 11 34 34 H 1.08998 * 110.48724 * 335.78294 * 19 5 4 35 35 H 1.09000 * 110.48225 * 98.42473 * 19 5 4 36 36 H 1.08007 * 126.03527 * 0.24051 * 21 20 2 37 37 H 1.08005 * 124.91546 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2226 -2.3470 6 1 1.2615 0.9381 -2.2989 7 6 3.4296 0.9661 -2.3552 8 6 4.1309 0.5928 -3.6776 9 6 2.9721 0.1776 -4.6179 10 1 2.4871 1.0557 -5.0442 11 6 3.4700 -0.7369 -5.7073 12 1 3.0815 -1.7414 -5.7887 13 6 4.4214 -0.2913 -6.6002 14 7 4.8949 0.9316 -6.5007 15 14 5.0381 -1.4245 -7.9511 16 1 3.8998 -1.8318 -8.8134 17 1 6.0498 -0.7117 -8.7717 18 1 5.6544 -2.6307 -7.3423 19 6 2.0119 -0.5764 -3.6646 20 6 2.0323 -0.7105 1.2303 21 6 2.1810 -0.0980 2.4088 22 16 2.7852 -1.2836 3.5638 23 6 2.7785 -2.4848 2.3471 24 7 2.3620 -1.9865 1.2322 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9173 -1.1205 -1.0289 29 1 3.2626 2.0423 -2.3120 30 1 4.0370 0.6475 -1.5079 31 1 4.6620 1.4535 -4.0839 32 1 4.8170 -0.2400 -3.5238 33 1 5.5640 1.2453 -7.1290 34 1 2.3542 -1.5995 -3.5092 35 1 0.9967 -0.5689 -4.0614 36 1 1.9646 0.9394 2.6175 37 1 3.0794 -3.5120 2.4909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296410149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:17 Heat of formation + Delta-G solvation = 35.220346 kcal Electronic energy + Delta-G solvation = -17922.662075 eV Core-core repulsion = 15212.124103 eV Total energy + Delta-G solvation = -2710.537972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14275 -37.80511 -34.88467 -32.39680 -30.62732 -28.88048 -27.92604 -26.47541 -25.26853 -23.56463 -22.30938 -19.65604 -19.13119 -19.08140 -18.00342 -16.37484 -15.84978 -15.49107 -14.84908 -14.52584 -14.29136 -13.88740 -13.39562 -13.31932 -12.88592 -12.33326 -12.27418 -12.11854 -11.82982 -11.45110 -11.15074 -10.94596 -10.80195 -10.60847 -10.46572 -9.99357 -9.74072 -9.68143 -9.60000 -9.45983 -9.07253 -8.92414 -8.70377 -8.29085 -7.86521 -5.92674 -3.94908 0.57980 1.25101 1.57223 2.71854 3.37611 3.41551 3.44954 4.06530 4.47280 4.55324 4.83894 5.10741 5.25432 5.38771 5.40952 5.42558 5.63697 5.72616 5.76706 5.92640 5.95568 6.07605 6.34257 6.35545 6.59097 6.76402 6.82620 6.92850 7.14737 7.21982 7.42807 7.56768 7.74102 7.79894 7.89935 8.00353 8.13132 8.55853 9.07649 9.68708 11.16543 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.003884 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.217370 B = 7207.085900 C = 7439.154111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.156 3.844 3 H 0.057 0.943 4 N -0.666 5.666 5 C 0.081 3.919 6 H 0.066 0.934 7 C -0.155 4.155 8 C -0.097 4.097 9 C 0.048 3.952 10 H 0.027 0.973 11 C -0.510 4.510 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C -0.100 4.100 20 C 0.072 3.928 21 C -0.255 4.255 22 S 0.098 5.902 23 C 0.024 3.976 24 N -0.445 5.445 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.348 0.652 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.258 0.742 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.176 0.824 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -1.447 20.166 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.075 0.925 4 N -0.298 5.298 5 C -0.028 4.028 6 H 0.084 0.916 7 C -0.195 4.195 8 C -0.135 4.135 9 C 0.029 3.971 10 H 0.045 0.955 11 C -0.548 4.548 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.138 4.138 20 C -0.060 4.060 21 C -0.395 4.395 22 S 0.350 5.650 23 C -0.275 4.275 24 N -0.158 5.158 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.168 0.832 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.193 0.807 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.366 -1.944 20.513 21.292 hybrid contribution 1.007 0.398 -1.117 1.556 sum -4.359 -1.546 19.396 19.940 Atomic orbital electron populations 1.21782 0.93504 1.02676 1.01183 1.20093 0.95845 0.94317 0.85414 0.92524 1.60699 1.34461 1.32148 1.02533 1.22422 0.95975 0.93132 0.91273 0.91589 1.23000 0.97194 0.99233 1.00028 1.22231 0.98943 1.00520 0.91799 1.19583 0.90949 0.94787 0.91782 0.95460 1.21126 1.22198 0.99085 1.12407 0.92689 1.24976 0.96502 0.94999 0.97495 1.69955 1.29807 1.16188 1.37175 0.86716 0.78540 0.80947 0.82123 1.20329 1.21454 1.20341 1.22416 0.99299 0.99444 0.92678 1.20555 1.00269 0.89176 0.96020 1.26810 1.11630 1.05017 0.96002 1.83966 1.60718 1.03160 1.17146 1.28522 1.03410 1.04726 0.90817 1.66105 1.12250 1.11635 1.25811 0.91773 0.93070 0.91754 0.83227 0.93329 0.94017 0.91630 0.93672 0.93190 0.91919 0.93612 0.80669 0.78422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.38 37.16 0.35 -1.31 16 2 C 0.16 2.15 2.80 -68.87 -0.19 1.96 16 3 H 0.06 0.76 7.72 -51.93 -0.40 0.36 16 4 N -0.67 -11.06 5.83 -99.79 -0.58 -11.65 16 5 C 0.08 1.49 3.02 -66.60 -0.20 1.29 16 6 H 0.07 1.14 7.16 -51.93 -0.37 0.77 16 7 C -0.16 -2.99 6.27 -25.61 -0.16 -3.15 16 8 C -0.10 -2.30 5.56 -25.07 -0.14 -2.44 16 9 C 0.05 1.21 2.82 -89.78 -0.25 0.96 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.51 -14.32 8.54 -34.44 -0.29 -14.62 16 12 H 0.05 1.53 7.78 -52.48 -0.41 1.12 16 13 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 14 N -0.89 -26.04 12.02 55.43 0.67 -25.37 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.10 -2.16 5.95 -25.07 -0.15 -2.31 16 20 C 0.07 0.93 5.59 -84.22 -0.47 0.46 16 21 C -0.26 -2.66 11.14 29.12 0.32 -2.34 16 22 S 0.10 0.85 23.22 -107.50 -2.50 -1.65 16 23 C 0.02 0.25 12.23 51.58 0.63 0.88 16 24 N -0.45 -6.06 9.76 -11.90 -0.12 -6.17 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 28 H 0.35 6.13 7.41 -39.29 -0.29 5.84 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.75 7.59 -51.93 -0.39 0.36 16 31 H 0.06 1.70 7.37 -51.93 -0.38 1.32 16 32 H 0.04 1.12 8.04 -51.93 -0.42 0.71 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 1.41 7.95 -51.93 -0.41 1.00 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -29.95 313.94 -9.03 -38.98 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.56 Total: 3.39 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.65 Total: -18.98 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.03 Total: -43.19 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.95 -9.03 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296410149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.200 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds