Wall clock time and date at job start Mon Mar 30 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47280 * 2 1 4 4 N 1.46899 * 109.46835 * 240.00403 * 2 1 3 5 5 C 1.46900 * 111.00499 * 84.99985 * 4 2 1 6 6 H 1.09001 * 110.01134 * 325.06206 * 5 4 2 7 7 C 1.53874 * 110.03270 * 86.44617 * 5 4 2 8 8 C 1.54276 * 106.59701 * 119.28691 * 7 5 4 9 9 C 1.54892 * 104.19218 * 23.61529 * 8 7 5 10 10 H 1.08998 * 110.75538 * 80.55387 * 9 8 7 11 11 C 1.50696 * 110.75499 * 203.74217 * 9 8 7 12 12 H 1.08004 * 120.00202 * 118.54133 * 11 9 8 13 13 C 1.37876 * 120.00205 * 298.54572 * 11 9 8 14 14 N 1.31518 * 119.99815 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00517 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46902 * 59.99785 * 15 13 11 17 17 H 1.48502 * 109.47143 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46709 * 299.99697 * 15 13 11 19 19 C 1.54264 * 110.03575 * 203.61712 * 5 4 2 20 20 C 1.50695 * 109.47234 * 120.00588 * 2 1 3 21 21 C 1.33643 * 122.74824 * 274.99760 * 20 2 1 22 22 S 1.76199 * 107.92569 * 179.97438 * 21 20 2 23 23 C 1.70974 * 90.28083 * 0.02562 * 22 21 20 24 24 N 1.29023 * 110.17232 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47152 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47192 * 299.99311 * 1 2 3 27 27 H 1.09001 * 109.47300 * 59.99893 * 1 2 3 28 28 H 1.00909 * 111.00103 * 208.95509 * 4 2 1 29 29 H 1.08994 * 110.03859 * 238.57316 * 7 5 4 30 30 H 1.09004 * 110.03152 * 0.02562 * 7 5 4 31 31 H 1.08997 * 110.48303 * 142.28972 * 8 7 5 32 32 H 1.08993 * 110.48914 * 264.80699 * 8 7 5 33 33 H 0.96998 * 120.00362 * 180.02562 * 14 13 11 34 34 H 1.08998 * 110.48724 * 335.78294 * 19 5 4 35 35 H 1.09000 * 110.48225 * 98.42473 * 19 5 4 36 36 H 1.08007 * 126.03527 * 0.24051 * 21 20 2 37 37 H 1.08005 * 124.91546 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2226 -2.3470 6 1 1.2615 0.9381 -2.2989 7 6 3.4296 0.9661 -2.3552 8 6 4.1309 0.5928 -3.6776 9 6 2.9721 0.1776 -4.6179 10 1 2.4871 1.0557 -5.0442 11 6 3.4700 -0.7369 -5.7073 12 1 3.0815 -1.7414 -5.7887 13 6 4.4214 -0.2913 -6.6002 14 7 4.8949 0.9316 -6.5007 15 14 5.0381 -1.4245 -7.9511 16 1 3.8998 -1.8318 -8.8134 17 1 6.0498 -0.7117 -8.7717 18 1 5.6544 -2.6307 -7.3423 19 6 2.0119 -0.5764 -3.6646 20 6 2.0323 -0.7105 1.2303 21 6 2.1810 -0.0980 2.4088 22 16 2.7852 -1.2836 3.5638 23 6 2.7785 -2.4848 2.3471 24 7 2.3620 -1.9865 1.2322 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9173 -1.1205 -1.0289 29 1 3.2626 2.0423 -2.3120 30 1 4.0370 0.6475 -1.5079 31 1 4.6620 1.4535 -4.0839 32 1 4.8170 -0.2400 -3.5238 33 1 5.5640 1.2453 -7.1290 34 1 2.3542 -1.5995 -3.5092 35 1 0.9967 -0.5689 -4.0614 36 1 1.9646 0.9394 2.6175 37 1 3.0794 -3.5120 2.4909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296410149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:17 Heat of formation + Delta-G solvation = 16.443931 kcal Electronic energy + Delta-G solvation = -17923.476281 eV Core-core repulsion = 15212.124103 eV Total energy + Delta-G solvation = -2711.352179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03022 -39.34977 -36.31008 -34.30670 -31.87110 -30.05777 -29.63320 -28.01187 -26.34297 -25.34928 -23.37769 -21.14098 -20.75761 -20.29576 -18.91361 -18.36897 -16.87656 -16.78391 -16.53321 -15.76040 -15.61564 -15.39672 -14.61670 -14.33727 -14.10787 -14.10207 -13.64607 -13.28080 -13.11044 -13.01285 -12.82175 -12.63773 -12.40015 -12.20509 -12.08981 -11.65367 -11.47929 -11.33252 -10.94019 -10.80011 -10.49820 -10.44572 -10.36494 -9.73648 -9.18499 -8.09696 -6.19495 -0.17392 0.54424 0.81857 1.41245 1.42887 1.50462 1.87563 2.44627 3.16606 3.20354 3.40340 3.94517 4.05660 4.09312 4.26545 4.35262 4.44938 4.47171 4.56730 4.71088 4.81700 4.89242 4.98067 5.05630 5.07943 5.17546 5.18514 5.26622 5.37733 5.45427 5.46793 5.66935 5.93534 6.02600 6.29152 6.41462 6.52689 6.90203 6.91069 7.47566 8.98300 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.003884 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.217370 B = 7207.085900 C = 7439.154111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.064 0.936 4 N -0.670 5.670 5 C 0.096 3.904 6 H 0.082 0.918 7 C -0.141 4.141 8 C -0.088 4.088 9 C 0.038 3.962 10 H 0.001 0.999 11 C -0.533 4.533 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.952 3.048 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.091 4.091 20 C 0.046 3.954 21 C -0.258 4.258 22 S 0.159 5.841 23 C 0.012 3.988 24 N -0.490 5.490 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.341 0.659 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.197 0.803 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -1.624 22.162 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 H 0.082 0.918 4 N -0.301 5.301 5 C -0.014 4.014 6 H 0.100 0.900 7 C -0.181 4.181 8 C -0.127 4.127 9 C 0.019 3.981 10 H 0.019 0.981 11 C -0.571 4.571 12 H 0.068 0.932 13 C -0.186 4.186 14 N -0.559 5.559 15 Si 0.778 3.222 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.130 4.130 20 C -0.086 4.086 21 C -0.398 4.398 22 S 0.412 5.588 23 C -0.286 4.286 24 N -0.204 5.204 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.160 0.840 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.214 0.786 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.652 -2.131 22.533 23.328 hybrid contribution 1.099 0.441 -1.645 2.027 sum -4.553 -1.690 20.888 21.445 Atomic orbital electron populations 1.21740 0.92714 1.01924 1.02183 1.20151 0.96421 0.94479 0.84707 0.91788 1.60610 1.34032 1.32080 1.03424 1.22165 0.95831 0.92844 0.90538 0.89963 1.22876 0.97366 1.00214 0.97609 1.21999 0.98133 0.98488 0.94047 1.19575 0.92290 0.93900 0.92306 0.98050 1.21498 1.22607 0.99346 1.13664 0.93217 1.25747 0.96660 0.96453 0.99744 1.70082 1.30176 1.17651 1.37963 0.85707 0.78135 0.79075 0.79322 1.19600 1.20869 1.19800 1.22245 0.98277 0.98612 0.93822 1.20436 1.02259 0.89494 0.96419 1.27129 1.10362 1.06402 0.95870 1.83762 1.58901 1.01126 1.15013 1.28956 1.02577 1.06270 0.90790 1.66078 1.14056 1.12408 1.27818 0.93342 0.90676 0.92112 0.83986 0.91980 0.92603 0.94369 0.95657 0.93174 0.93241 0.93241 0.78618 0.76157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.38 71.98 0.68 -2.27 16 2 C 0.15 4.00 2.80 44.17 0.12 4.12 16 3 H 0.06 1.56 7.72 -2.39 -0.02 1.54 16 4 N -0.67 -21.69 5.83 -469.62 -2.74 -24.43 16 5 C 0.10 3.44 3.02 45.64 0.14 3.58 16 6 H 0.08 2.71 7.16 -2.39 -0.02 2.69 16 7 C -0.14 -5.34 6.27 31.32 0.20 -5.14 16 8 C -0.09 -4.31 5.56 31.67 0.18 -4.13 16 9 C 0.04 1.99 2.82 -10.25 -0.03 1.96 16 10 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 11 C -0.53 -30.72 8.54 25.60 0.22 -30.50 16 12 H 0.05 2.84 7.78 -2.91 -0.02 2.81 16 13 C 0.01 0.72 5.33 84.65 0.45 1.17 16 14 N -0.92 -54.85 12.02 21.45 0.26 -54.59 16 15 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 C -0.09 -3.98 5.95 31.67 0.19 -3.79 16 20 C 0.05 1.11 5.59 41.52 0.23 1.34 16 21 C -0.26 -4.66 11.14 66.78 0.74 -3.92 16 22 S 0.16 2.28 23.22 -56.49 -1.31 0.97 16 23 C 0.01 0.22 12.23 130.66 1.60 1.81 16 24 N -0.49 -12.73 9.76 -191.55 -1.87 -14.60 16 25 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.42 7.45 -2.39 -0.02 1.41 16 28 H 0.34 11.88 7.41 -89.69 -0.66 11.21 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.96 7.59 -2.39 -0.02 1.94 16 31 H 0.04 2.03 7.37 -2.39 -0.02 2.02 16 32 H 0.02 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 34 H 0.05 2.26 7.95 -2.39 -0.02 2.24 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -65.74 313.94 1.47 -64.27 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.39 Total: 17.06 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 4.71 Total: -35.78 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -4.35 Total: -93.61 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.31 Total: 0.97 kcal Total: -65.74 1.47 -64.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296410149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.716 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds