Wall clock time and date at job start Mon Mar 30 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47053 * 2 1 4 4 N 1.46903 * 109.47188 * 240.00587 * 2 1 3 5 5 C 1.46896 * 111.00150 * 84.99767 * 4 2 1 6 6 H 1.09003 * 110.67563 * 328.23152 * 5 4 2 7 7 C 1.54961 * 110.76686 * 91.63273 * 5 4 2 8 8 C 1.54270 * 104.16191 * 156.22192 * 7 5 4 9 9 C 1.53869 * 106.63967 * 336.44607 * 8 7 5 10 10 H 1.08999 * 110.03405 * 119.26051 * 9 8 7 11 11 C 1.50703 * 110.03536 * 240.64336 * 9 8 7 12 12 H 1.07999 * 120.00185 * 118.54258 * 11 9 8 13 13 C 1.37876 * 119.99667 * 298.54614 * 11 9 8 14 14 N 1.31522 * 120.00182 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00095 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46924 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46911 * 120.00115 * 15 13 11 18 18 H 1.48496 * 109.47328 * 240.00269 * 15 13 11 19 19 C 1.54268 * 106.60115 * 359.97438 * 9 8 7 20 20 C 1.50697 * 109.47656 * 120.00123 * 2 1 3 21 21 C 1.33635 * 126.03939 * 259.72259 * 20 2 1 22 22 N 1.31785 * 114.49787 * 179.78595 * 21 20 2 23 23 C 1.29023 * 117.12494 * 0.51634 * 22 21 20 24 24 S 1.70975 * 110.16964 * 359.71748 * 23 22 21 25 25 H 1.09001 * 109.46943 * 299.99547 * 1 2 3 26 26 H 1.09001 * 109.47551 * 59.99893 * 1 2 3 27 27 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 28 28 H 1.00895 * 110.99984 * 208.95032 * 4 2 1 29 29 H 1.08997 * 110.47708 * 37.56790 * 7 5 4 30 30 H 1.09002 * 110.53308 * 274.90181 * 7 5 4 31 31 H 1.09002 * 110.03399 * 217.13605 * 8 7 5 32 32 H 1.08995 * 110.02943 * 95.75505 * 8 7 5 33 33 H 0.96997 * 120.00208 * 180.02562 * 14 13 11 34 34 H 1.08997 * 110.48788 * 142.28685 * 19 9 8 35 35 H 1.09000 * 110.48806 * 264.79985 * 19 9 8 36 36 H 1.07994 * 122.74913 * 359.96848 * 21 20 2 37 37 H 1.08006 * 124.91666 * 179.75128 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 1 1.2992 0.9779 -2.2801 7 6 3.4802 0.8841 -2.4463 8 6 3.6043 1.2830 -3.9314 9 6 2.6494 0.3658 -4.7152 10 1 1.8946 0.9626 -5.2272 11 6 3.4247 -0.4532 -5.7149 12 1 3.4272 -1.5309 -5.6442 13 6 4.1309 0.1734 -6.7197 14 7 4.1283 1.4858 -6.8055 15 14 5.0925 -0.8416 -7.9585 16 1 4.9349 -2.2846 -7.6449 17 1 4.5769 -0.5733 -9.3250 18 1 6.5296 -0.4740 -7.8906 19 6 1.9781 -0.5598 -3.6796 20 6 2.0324 -0.7104 1.2304 21 6 2.4763 -0.1281 2.3483 22 7 2.8583 -0.9693 3.2880 23 6 2.7710 -2.2286 3.0212 24 16 2.1453 -2.4555 1.4463 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.9173 -1.1203 -1.0289 29 1 4.2594 0.1713 -2.1765 30 1 3.5319 1.7667 -1.8087 31 1 4.6286 1.1353 -4.2735 32 1 3.3134 2.3251 -4.0636 33 1 4.6248 1.9266 -7.5126 34 1 0.9338 -0.7306 -3.9409 35 1 2.5131 -1.5070 -3.6110 36 1 2.5158 0.9439 2.4725 37 1 3.0518 -3.0244 3.6953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296469938.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:41 Heat of formation + Delta-G solvation = 29.379934 kcal Electronic energy + Delta-G solvation = -17837.603121 eV Core-core repulsion = 15126.811890 eV Total energy + Delta-G solvation = -2710.791232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79608 -38.08314 -35.48964 -32.52101 -30.56178 -28.88404 -27.99179 -26.39892 -25.37149 -23.59680 -21.71783 -20.42272 -19.60758 -18.86889 -18.03779 -16.34812 -15.85779 -15.52106 -14.75549 -14.55847 -14.23572 -14.08219 -13.96530 -13.44374 -12.74638 -12.43125 -12.26046 -12.10295 -11.63597 -11.50148 -11.39543 -11.03717 -10.87990 -10.63326 -10.45817 -10.25218 -9.83932 -9.73236 -9.59476 -9.36655 -9.16505 -9.01790 -8.65860 -8.35511 -8.07821 -5.98036 -4.00639 0.59341 1.26842 1.70628 2.71463 3.30778 3.39110 3.43106 4.16865 4.32800 4.47491 4.65600 5.10554 5.20309 5.29544 5.34066 5.43722 5.55203 5.62624 5.72452 5.87706 5.90440 6.01009 6.20392 6.24860 6.49186 6.63884 6.71522 6.83117 7.05117 7.12081 7.38509 7.45829 7.54246 7.62008 7.76105 7.95948 8.02980 8.51610 9.03501 9.63208 11.11205 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.004034 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.610903 B = 6938.686733 C = 7178.849911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 H 0.064 0.936 4 N -0.677 5.677 5 C 0.080 3.920 6 H 0.075 0.925 7 C -0.151 4.151 8 C -0.087 4.087 9 C 0.043 3.957 10 H 0.025 0.975 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.097 4.097 20 C -0.213 4.213 21 C 0.027 3.973 22 N -0.473 5.473 23 C -0.005 4.005 24 S 0.162 5.838 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.341 0.659 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.258 0.742 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.172 0.828 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.881 -4.533 16.972 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.082 0.918 4 N -0.308 5.308 5 C -0.029 4.029 6 H 0.094 0.906 7 C -0.191 4.191 8 C -0.126 4.126 9 C 0.024 3.976 10 H 0.043 0.957 11 C -0.547 4.547 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.135 4.135 20 C -0.335 4.335 21 C -0.125 4.125 22 N -0.186 5.186 23 C -0.302 4.302 24 S 0.414 5.586 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.189 0.811 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.441 -5.388 16.661 18.336 hybrid contribution 1.544 1.038 -0.301 1.884 sum -3.898 -4.350 16.360 17.371 Atomic orbital electron populations 1.21832 0.93237 1.02674 1.01606 1.19943 0.95912 0.94981 0.84607 0.91842 1.60869 1.33558 1.33075 1.03297 1.22775 0.96360 0.93334 0.90452 0.90639 1.23097 0.96834 0.99019 1.00111 1.21968 1.02242 0.98251 0.90154 1.19266 0.93682 0.92715 0.91971 0.95655 1.21310 1.29317 0.92880 1.11200 0.92643 1.24989 0.96749 0.94847 0.97603 1.69997 1.42288 1.07617 1.33041 0.86617 0.79801 0.80630 0.81443 1.19787 1.21119 1.21175 1.22413 0.99401 0.99136 0.92562 1.26288 1.08823 0.96414 1.01956 1.21746 1.01079 1.01025 0.88671 1.66331 1.17773 1.01797 1.32706 1.28424 1.04622 0.97150 0.99986 1.84273 1.57469 1.04787 1.12027 0.92671 0.91591 0.91896 0.84039 0.92716 0.94000 0.91863 0.94495 0.93240 0.93594 0.92199 0.81058 0.78767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.38 37.16 0.35 -1.17 16 2 C 0.16 1.92 2.94 -68.87 -0.20 1.72 16 3 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 4 N -0.68 -9.70 6.03 -98.83 -0.60 -10.30 16 5 C 0.08 1.35 2.97 -65.68 -0.20 1.16 16 6 H 0.08 1.25 7.23 -51.93 -0.38 0.87 16 7 C -0.15 -2.77 6.42 -25.03 -0.16 -2.93 16 8 C -0.09 -2.01 5.55 -25.61 -0.14 -2.15 16 9 C 0.04 1.04 2.84 -90.65 -0.26 0.78 16 10 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 11 C -0.51 -13.86 8.34 -34.44 -0.29 -14.15 16 12 H 0.06 1.50 7.55 -52.49 -0.40 1.11 16 13 C 0.06 1.64 5.07 -17.82 -0.09 1.55 16 14 N -0.89 -25.58 12.33 55.43 0.68 -24.90 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 C -0.10 -1.96 6.03 -25.07 -0.15 -2.11 16 20 C -0.21 -2.46 5.20 -35.92 -0.19 -2.65 16 21 C 0.03 0.31 11.24 -19.18 -0.22 0.09 16 22 N -0.47 -5.77 10.54 -15.75 -0.17 -5.93 16 23 C 0.00 -0.05 12.23 51.58 0.63 0.58 16 24 S 0.16 1.66 22.86 -107.50 -2.46 -0.80 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.77 7.52 -51.93 -0.39 0.38 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.34 4.95 7.66 -39.29 -0.30 4.65 16 29 H 0.05 1.00 7.77 -51.93 -0.40 0.59 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.63 7.17 -51.93 -0.37 1.26 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 36 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -29.00 314.56 -9.29 -38.29 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.56 Total: 1.91 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -0.91 Total: -19.28 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.08 Total: -41.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.46 Total: -0.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.00 -9.29 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296469938.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.669 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds