Wall clock time and date at job start Mon Mar 30 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47053 * 2 1 4 4 N 1.46903 * 109.47188 * 240.00587 * 2 1 3 5 5 C 1.46896 * 111.00150 * 84.99767 * 4 2 1 6 6 H 1.09003 * 110.67563 * 328.23152 * 5 4 2 7 7 C 1.54961 * 110.76686 * 91.63273 * 5 4 2 8 8 C 1.54270 * 104.16191 * 156.22192 * 7 5 4 9 9 C 1.53869 * 106.63967 * 336.44607 * 8 7 5 10 10 H 1.08999 * 110.03405 * 119.26051 * 9 8 7 11 11 C 1.50703 * 110.03536 * 240.64336 * 9 8 7 12 12 H 1.07999 * 120.00185 * 118.54258 * 11 9 8 13 13 C 1.37876 * 119.99667 * 298.54614 * 11 9 8 14 14 N 1.31522 * 120.00182 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00095 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46924 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46911 * 120.00115 * 15 13 11 18 18 H 1.48496 * 109.47328 * 240.00269 * 15 13 11 19 19 C 1.54268 * 106.60115 * 359.97438 * 9 8 7 20 20 C 1.50697 * 109.47656 * 120.00123 * 2 1 3 21 21 C 1.33635 * 126.03939 * 259.72259 * 20 2 1 22 22 N 1.31785 * 114.49787 * 179.78595 * 21 20 2 23 23 C 1.29023 * 117.12494 * 0.51634 * 22 21 20 24 24 S 1.70975 * 110.16964 * 359.71748 * 23 22 21 25 25 H 1.09001 * 109.46943 * 299.99547 * 1 2 3 26 26 H 1.09001 * 109.47551 * 59.99893 * 1 2 3 27 27 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 28 28 H 1.00895 * 110.99984 * 208.95032 * 4 2 1 29 29 H 1.08997 * 110.47708 * 37.56790 * 7 5 4 30 30 H 1.09002 * 110.53308 * 274.90181 * 7 5 4 31 31 H 1.09002 * 110.03399 * 217.13605 * 8 7 5 32 32 H 1.08995 * 110.02943 * 95.75505 * 8 7 5 33 33 H 0.96997 * 120.00208 * 180.02562 * 14 13 11 34 34 H 1.08997 * 110.48788 * 142.28685 * 19 9 8 35 35 H 1.09000 * 110.48806 * 264.79985 * 19 9 8 36 36 H 1.07994 * 122.74913 * 359.96848 * 21 20 2 37 37 H 1.08006 * 124.91666 * 179.75128 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 1 1.2992 0.9779 -2.2801 7 6 3.4802 0.8841 -2.4463 8 6 3.6043 1.2830 -3.9314 9 6 2.6494 0.3658 -4.7152 10 1 1.8946 0.9626 -5.2272 11 6 3.4247 -0.4532 -5.7149 12 1 3.4272 -1.5309 -5.6442 13 6 4.1309 0.1734 -6.7197 14 7 4.1283 1.4858 -6.8055 15 14 5.0925 -0.8416 -7.9585 16 1 4.9349 -2.2846 -7.6449 17 1 4.5769 -0.5733 -9.3250 18 1 6.5296 -0.4740 -7.8906 19 6 1.9781 -0.5598 -3.6796 20 6 2.0324 -0.7104 1.2304 21 6 2.4763 -0.1281 2.3483 22 7 2.8583 -0.9693 3.2880 23 6 2.7710 -2.2286 3.0212 24 16 2.1453 -2.4555 1.4463 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.9173 -1.1203 -1.0289 29 1 4.2594 0.1713 -2.1765 30 1 3.5319 1.7667 -1.8087 31 1 4.6286 1.1353 -4.2735 32 1 3.3134 2.3251 -4.0636 33 1 4.6248 1.9266 -7.5126 34 1 0.9338 -0.7306 -3.9409 35 1 2.5131 -1.5070 -3.6110 36 1 2.5158 0.9439 2.4725 37 1 3.0518 -3.0244 3.6953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296469938.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:41 Heat of formation + Delta-G solvation = 11.695499 kcal Electronic energy + Delta-G solvation = -17838.369976 eV Core-core repulsion = 15126.811890 eV Total energy + Delta-G solvation = -2711.558086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65502 -39.51312 -36.84568 -34.40341 -31.87173 -29.93121 -29.62796 -27.94159 -26.34140 -25.40863 -22.74234 -21.49117 -20.94185 -20.59282 -18.93991 -18.26970 -16.98757 -16.74920 -16.50179 -15.76492 -15.62903 -15.30541 -14.79531 -14.44854 -14.33273 -14.01949 -13.58932 -13.44276 -12.99175 -12.88100 -12.64183 -12.51129 -12.45655 -12.28081 -12.05173 -11.84503 -11.57603 -11.40884 -11.01803 -10.69151 -10.54413 -10.45035 -10.17343 -9.85155 -9.31437 -8.10509 -6.19746 -0.20962 0.47747 0.90636 1.39528 1.41773 1.52932 1.88535 2.44209 3.12602 3.20689 3.48800 3.76017 4.01313 4.07501 4.26642 4.35286 4.38990 4.44319 4.58984 4.66571 4.85106 4.92862 4.95212 5.04033 5.06271 5.17317 5.20845 5.26743 5.35397 5.46572 5.50940 5.69138 5.96049 5.98221 6.17174 6.39163 6.45899 6.76822 6.93285 7.47602 8.98289 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.004034 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.610903 B = 6938.686733 C = 7178.849911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.067 0.933 4 N -0.674 5.674 5 C 0.099 3.901 6 H 0.085 0.915 7 C -0.139 4.139 8 C -0.080 4.080 9 C 0.033 3.967 10 H -0.007 1.007 11 C -0.526 4.526 12 H 0.052 0.948 13 C 0.009 3.991 14 N -0.921 5.921 15 Si 0.950 3.050 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.088 4.088 20 C -0.228 4.228 21 C 0.023 3.977 22 N -0.502 5.502 23 C 0.005 3.995 24 S 0.171 5.829 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.341 0.659 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.258 0.742 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.183 0.817 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -5.581 18.524 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 H 0.085 0.915 4 N -0.305 5.305 5 C -0.011 4.011 6 H 0.103 0.897 7 C -0.178 4.178 8 C -0.119 4.119 9 C 0.014 3.986 10 H 0.011 0.989 11 C -0.564 4.564 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.561 5.561 15 Si 0.776 3.224 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.127 4.127 20 C -0.350 4.350 21 C -0.128 4.128 22 N -0.216 5.216 23 C -0.291 4.291 24 S 0.424 5.576 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.161 0.839 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.200 0.800 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.510 -6.451 18.226 20.103 hybrid contribution 1.546 1.333 -0.755 2.176 sum -3.965 -5.118 17.471 18.632 Atomic orbital electron populations 1.21809 0.92494 1.02579 1.02137 1.19933 0.96397 0.94974 0.83803 0.91500 1.60772 1.33600 1.32529 1.03580 1.22454 0.95608 0.93045 0.89947 0.89687 1.22985 0.97955 1.00113 0.96767 1.21750 0.99572 0.97173 0.93378 1.19280 0.93264 0.93228 0.92782 0.98880 1.21671 1.29596 0.93028 1.12094 0.92974 1.25750 0.97771 0.95863 0.99501 1.70116 1.43131 1.09068 1.33743 0.85622 0.78354 0.79389 0.79019 1.19027 1.20756 1.20800 1.22229 0.98899 0.98157 0.93392 1.26180 1.09916 0.97151 1.01759 1.21963 1.00559 1.01708 0.88594 1.66386 1.19163 1.02709 1.33326 1.28983 1.02817 0.97254 1.00095 1.84259 1.57245 1.03887 1.12238 0.91122 0.92092 0.92289 0.83946 0.92386 0.91771 0.95279 0.95879 0.93261 0.93176 0.92878 0.80050 0.75755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.38 71.98 0.68 -1.99 16 2 C 0.16 3.54 2.94 44.17 0.13 3.67 16 3 H 0.07 1.46 7.85 -2.39 -0.02 1.44 16 4 N -0.67 -17.96 6.03 -466.59 -2.81 -20.77 16 5 C 0.10 3.21 2.97 46.23 0.14 3.35 16 6 H 0.09 2.64 7.23 -2.39 -0.02 2.62 16 7 C -0.14 -4.93 6.42 31.70 0.20 -4.72 16 8 C -0.08 -3.74 5.55 31.32 0.17 -3.57 16 9 C 0.03 1.67 2.84 -10.82 -0.03 1.64 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.53 -29.18 8.34 25.60 0.21 -28.96 16 12 H 0.05 2.85 7.55 -2.91 -0.02 2.83 16 13 C 0.01 0.53 5.07 84.65 0.43 0.96 16 14 N -0.92 -54.19 12.33 21.45 0.26 -53.92 16 15 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 C -0.09 -3.56 6.03 31.67 0.19 -3.36 16 20 C -0.23 -4.77 5.20 24.64 0.13 -4.64 16 21 C 0.02 0.50 11.24 83.65 0.94 1.44 16 22 N -0.50 -11.15 10.54 -203.75 -2.15 -13.30 16 23 C 0.01 0.09 12.23 130.66 1.60 1.69 16 24 S 0.17 3.11 22.86 -56.49 -1.29 1.82 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.29 7.52 -2.39 -0.02 1.27 16 27 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 28 H 0.34 9.19 7.66 -89.70 -0.69 8.51 16 29 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.03 1.52 7.17 -2.39 -0.02 1.51 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.19 7.68 -2.39 -0.02 2.17 16 36 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.23 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -62.81 314.56 1.20 -61.61 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.37 Total: 12.95 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.79 Total: -34.51 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -4.70 Total: -87.99 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.29 Total: 1.82 kcal Total: -62.81 1.20 -61.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296469938.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.306 kcal (2) G-P(sol) polarization free energy of solvation -62.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds