Wall clock time and date at job start Mon Mar 30 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 5 5 C 1.46904 * 110.99716 * 274.99847 * 4 2 1 6 6 H 1.08997 * 110.43479 * 327.54305 * 5 4 2 7 7 C 1.54269 * 110.48513 * 90.22061 * 5 4 2 8 8 C 1.53874 * 106.59760 * 142.28685 * 7 5 4 9 9 C 1.54270 * 106.59805 * 0.02562 * 8 7 5 10 10 H 1.09002 * 110.48314 * 95.06694 * 9 8 7 11 11 C 1.50692 * 110.60303 * 217.65127 * 9 8 7 12 12 H 1.08007 * 119.99778 * 114.83519 * 11 9 8 13 13 C 1.37873 * 120.00526 * 294.84692 * 11 9 8 14 14 N 1.31513 * 119.99785 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00518 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47227 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47114 * 119.99769 * 15 13 11 18 18 H 1.48496 * 109.47682 * 239.99977 * 15 13 11 19 19 C 1.54889 * 104.19798 * 336.39142 * 9 8 7 20 20 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 21 21 C 1.33638 * 126.03236 * 100.00159 * 20 2 1 22 22 N 1.31789 * 114.49560 * 180.02562 * 21 20 2 23 23 C 1.29024 * 117.12243 * 359.97438 * 22 21 20 24 24 S 1.70974 * 110.17262 * 359.72769 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.00900 * 110.99634 * 38.94573 * 4 2 1 29 29 H 1.08997 * 110.03501 * 261.57398 * 7 5 4 30 30 H 1.09001 * 110.03191 * 23.00767 * 7 5 4 31 31 H 1.08998 * 110.03519 * 240.72022 * 8 7 5 32 32 H 1.08998 * 110.07123 * 119.30410 * 8 7 5 33 33 H 0.97000 * 120.00591 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.75320 * 279.63084 * 19 9 8 35 35 H 1.08993 * 110.76025 * 156.25357 * 19 9 8 36 36 H 1.07998 * 122.75344 * 359.97438 * 21 20 2 37 37 H 1.08005 * 124.91524 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2226 2.3469 6 1 2.3200 1.2333 2.0151 7 6 0.7502 0.2058 3.1245 8 6 1.1108 0.3111 4.6166 9 6 2.6496 0.3890 4.6937 10 1 2.9770 1.4275 4.7427 11 6 3.1605 -0.3804 5.8845 12 1 3.7715 -1.2589 5.7380 13 6 2.8479 0.0370 7.1608 14 7 2.1042 1.1069 7.3391 15 14 3.4806 -0.9172 8.6368 16 1 4.2882 -2.0727 8.1701 17 1 4.3251 -0.0289 9.4755 18 1 2.3312 -1.4088 9.4383 19 6 3.1298 -0.2691 3.3764 20 6 2.0323 -0.7105 -1.2305 21 6 2.4713 -0.1282 -2.3503 22 7 2.8581 -0.9693 -3.2882 23 6 2.7702 -2.2287 -3.0215 24 16 2.1520 -2.4555 -1.4437 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.4495 -1.4979 1.4101 29 1 0.1343 1.0548 2.8283 30 1 0.2184 -0.7264 2.9339 31 1 0.7540 -0.5698 5.1502 32 1 0.6699 1.2111 5.0454 33 1 1.8845 1.4008 8.2370 34 1 3.1099 -1.3559 3.4579 35 1 4.1270 0.0813 3.1106 36 1 2.5055 0.9439 -2.4767 37 1 3.0507 -3.0244 -3.6958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296469940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:43 Heat of formation + Delta-G solvation = 29.498327 kcal Electronic energy + Delta-G solvation = -17806.237742 eV Core-core repulsion = 15095.451644 eV Total energy + Delta-G solvation = -2710.786098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70817 -38.22987 -35.48434 -32.50919 -30.58714 -28.80206 -28.07618 -26.19864 -25.41196 -23.65737 -21.89166 -20.46734 -19.43574 -19.07680 -17.94693 -16.46518 -15.86381 -15.34280 -14.63344 -14.45570 -14.21146 -13.98481 -13.88115 -13.47939 -13.13346 -12.44618 -12.33600 -12.22901 -11.76900 -11.60469 -11.13951 -11.13719 -10.99566 -10.66690 -10.48966 -10.16062 -9.86246 -9.69113 -9.56160 -9.27110 -9.11161 -8.96100 -8.71550 -8.36816 -8.12136 -5.99281 -4.01294 0.70173 1.35971 1.77992 2.80039 3.30547 3.38873 3.43077 4.19445 4.38279 4.47526 4.76344 4.98896 5.14981 5.19638 5.32028 5.46542 5.51914 5.57958 5.69019 5.75829 5.85755 6.00752 6.09435 6.18530 6.44805 6.62129 6.71418 6.82673 7.01536 7.10936 7.33681 7.43651 7.57331 7.64903 7.71728 7.91907 8.04404 8.49571 9.02554 9.62834 11.10658 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038613 B = 0.003887 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.968594 B = 7202.064030 C = 7553.549790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.155 3.845 3 H 0.097 0.903 4 N -0.676 5.676 5 C 0.082 3.918 6 H 0.073 0.927 7 C -0.151 4.151 8 C -0.095 4.095 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.510 4.510 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.099 4.099 20 C -0.183 4.183 21 C 0.017 3.983 22 N -0.471 5.471 23 C -0.006 4.006 24 S 0.146 5.854 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.341 0.659 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.258 0.742 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.171 0.829 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 -4.321 -17.200 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.043 3.957 3 H 0.115 0.885 4 N -0.306 5.306 5 C -0.027 4.027 6 H 0.092 0.908 7 C -0.190 4.190 8 C -0.134 4.134 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.548 4.548 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.137 4.137 20 C -0.305 4.305 21 C -0.134 4.134 22 N -0.184 5.184 23 C -0.303 4.303 24 S 0.398 5.602 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.189 0.811 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.923 -4.878 -17.184 18.100 hybrid contribution -0.655 0.521 0.919 1.243 sum -3.578 -4.356 -16.265 17.214 Atomic orbital electron populations 1.22634 0.95766 1.02559 1.03010 1.19973 0.92640 0.96843 0.86285 0.88493 1.60795 1.56412 1.09739 1.03686 1.22636 0.96257 0.94793 0.89009 0.90839 1.22995 0.96764 0.99413 0.99801 1.22046 0.99905 1.00948 0.90512 1.19458 0.90933 0.96007 0.90828 0.95267 1.21205 1.31576 1.11538 0.90519 0.92590 1.24986 0.95159 0.95005 0.98893 1.69977 1.37601 1.23831 1.21580 0.86608 0.78662 0.80135 0.83028 1.19770 1.21108 1.21160 1.22537 0.95992 1.00350 0.94871 1.26169 1.07580 0.95825 1.00931 1.21666 1.01876 1.00923 0.88925 1.66295 1.17525 1.01775 1.32833 1.28306 1.05377 0.97105 0.99533 1.84062 1.58365 1.05504 1.12244 0.92099 0.90943 0.92384 0.84015 0.93615 0.93301 0.93124 0.92924 0.93229 0.92251 0.93308 0.81148 0.78917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 8.96 37.16 0.33 -1.56 16 2 C 0.16 1.84 3.04 -68.86 -0.21 1.63 16 3 H 0.10 1.14 7.43 -51.93 -0.39 0.76 16 4 N -0.68 -9.48 5.94 -99.22 -0.59 -10.07 16 5 C 0.08 1.36 3.17 -66.06 -0.21 1.15 16 6 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 7 C -0.15 -2.60 5.13 -25.61 -0.13 -2.73 16 8 C -0.10 -2.14 5.60 -25.61 -0.14 -2.28 16 9 C 0.05 1.13 2.72 -90.11 -0.24 0.89 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.51 -13.88 8.37 -34.45 -0.29 -14.16 16 12 H 0.06 1.52 7.77 -52.48 -0.41 1.11 16 13 C 0.06 1.68 5.35 -17.82 -0.10 1.59 16 14 N -0.89 -25.51 12.63 55.43 0.70 -24.81 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.10 -2.01 5.96 -24.75 -0.15 -2.15 16 20 C -0.18 -2.15 5.53 -35.92 -0.20 -2.35 16 21 C 0.02 0.20 11.24 -19.18 -0.22 -0.01 16 22 N -0.47 -5.92 10.54 -15.75 -0.17 -6.09 16 23 C -0.01 -0.06 12.23 51.58 0.63 0.57 16 24 S 0.15 1.53 23.01 -107.50 -2.47 -0.94 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.81 6.13 -51.93 -0.32 0.49 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.34 4.65 7.80 -39.29 -0.31 4.34 16 29 H 0.05 0.73 7.41 -51.93 -0.38 0.34 16 30 H 0.05 0.78 7.52 -51.93 -0.39 0.39 16 31 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 32 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.19 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -29.11 312.69 -9.25 -38.36 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.49 Total: 2.05 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -0.92 Total: -19.43 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.05 Total: -40.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.94 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.11 -9.25 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296469940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds