Wall clock time and date at job start Mon Mar 30 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 5 5 C 1.46904 * 110.99716 * 274.99847 * 4 2 1 6 6 H 1.08997 * 110.43479 * 327.54305 * 5 4 2 7 7 C 1.54269 * 110.48513 * 90.22061 * 5 4 2 8 8 C 1.53874 * 106.59760 * 142.28685 * 7 5 4 9 9 C 1.54270 * 106.59805 * 0.02562 * 8 7 5 10 10 H 1.09002 * 110.48314 * 95.06694 * 9 8 7 11 11 C 1.50692 * 110.60303 * 217.65127 * 9 8 7 12 12 H 1.08007 * 119.99778 * 114.83519 * 11 9 8 13 13 C 1.37873 * 120.00526 * 294.84692 * 11 9 8 14 14 N 1.31513 * 119.99785 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00518 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47227 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47114 * 119.99769 * 15 13 11 18 18 H 1.48496 * 109.47682 * 239.99977 * 15 13 11 19 19 C 1.54889 * 104.19798 * 336.39142 * 9 8 7 20 20 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 21 21 C 1.33638 * 126.03236 * 100.00159 * 20 2 1 22 22 N 1.31789 * 114.49560 * 180.02562 * 21 20 2 23 23 C 1.29024 * 117.12243 * 359.97438 * 22 21 20 24 24 S 1.70974 * 110.17262 * 359.72769 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.00900 * 110.99634 * 38.94573 * 4 2 1 29 29 H 1.08997 * 110.03501 * 261.57398 * 7 5 4 30 30 H 1.09001 * 110.03191 * 23.00767 * 7 5 4 31 31 H 1.08998 * 110.03519 * 240.72022 * 8 7 5 32 32 H 1.08998 * 110.07123 * 119.30410 * 8 7 5 33 33 H 0.97000 * 120.00591 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.75320 * 279.63084 * 19 9 8 35 35 H 1.08993 * 110.76025 * 156.25357 * 19 9 8 36 36 H 1.07998 * 122.75344 * 359.97438 * 21 20 2 37 37 H 1.08005 * 124.91524 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2226 2.3469 6 1 2.3200 1.2333 2.0151 7 6 0.7502 0.2058 3.1245 8 6 1.1108 0.3111 4.6166 9 6 2.6496 0.3890 4.6937 10 1 2.9770 1.4275 4.7427 11 6 3.1605 -0.3804 5.8845 12 1 3.7715 -1.2589 5.7380 13 6 2.8479 0.0370 7.1608 14 7 2.1042 1.1069 7.3391 15 14 3.4806 -0.9172 8.6368 16 1 4.2882 -2.0727 8.1701 17 1 4.3251 -0.0289 9.4755 18 1 2.3312 -1.4088 9.4383 19 6 3.1298 -0.2691 3.3764 20 6 2.0323 -0.7105 -1.2305 21 6 2.4713 -0.1282 -2.3503 22 7 2.8581 -0.9693 -3.2882 23 6 2.7702 -2.2287 -3.0215 24 16 2.1520 -2.4555 -1.4437 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.4495 -1.4979 1.4101 29 1 0.1343 1.0548 2.8283 30 1 0.2184 -0.7264 2.9339 31 1 0.7540 -0.5698 5.1502 32 1 0.6699 1.2111 5.0454 33 1 1.8845 1.4008 8.2370 34 1 3.1099 -1.3559 3.4579 35 1 4.1270 0.0813 3.1106 36 1 2.5055 0.9439 -2.4767 37 1 3.0507 -3.0244 -3.6958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296469940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:43 Heat of formation + Delta-G solvation = 11.626961 kcal Electronic energy + Delta-G solvation = -17807.012702 eV Core-core repulsion = 15095.451644 eV Total energy + Delta-G solvation = -2711.561058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58940 -39.59366 -36.84531 -34.39615 -31.86162 -29.87313 -29.67544 -27.70975 -26.38376 -25.41324 -22.85909 -21.57451 -20.92496 -20.61070 -18.84687 -18.35463 -17.02230 -16.60978 -16.49437 -15.52746 -15.51313 -15.14224 -14.74980 -14.53521 -14.34555 -14.09593 -13.78841 -13.51454 -13.21219 -12.90057 -12.71711 -12.52841 -12.36161 -12.29082 -12.01065 -11.76114 -11.54347 -11.32264 -10.98909 -10.72230 -10.52223 -10.46579 -10.09216 -9.80872 -9.29569 -8.10902 -6.19662 -0.12375 0.55172 0.95466 1.39801 1.42079 1.53318 1.94545 2.44431 3.15009 3.20979 3.57755 3.83639 4.00544 4.07834 4.21263 4.27265 4.34951 4.46536 4.65391 4.71738 4.84503 4.88055 4.91141 5.03060 5.06034 5.20021 5.24048 5.26426 5.28393 5.46555 5.47414 5.68147 5.95226 6.00945 6.17095 6.40873 6.48262 6.82318 6.92529 7.47774 8.98358 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038613 B = 0.003887 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.968594 B = 7202.064030 C = 7553.549790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.159 3.841 3 H 0.099 0.901 4 N -0.677 5.677 5 C 0.100 3.900 6 H 0.080 0.920 7 C -0.136 4.136 8 C -0.087 4.087 9 C 0.036 3.964 10 H -0.003 1.003 11 C -0.528 4.528 12 H 0.051 0.949 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.091 4.091 20 C -0.199 4.199 21 C 0.011 3.989 22 N -0.501 5.501 23 C 0.000 4.000 24 S 0.158 5.842 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.345 0.655 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.182 0.818 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -5.388 -18.587 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.047 3.953 3 H 0.117 0.883 4 N -0.307 5.307 5 C -0.010 4.010 6 H 0.098 0.902 7 C -0.175 4.175 8 C -0.126 4.126 9 C 0.017 3.983 10 H 0.016 0.984 11 C -0.567 4.567 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.130 4.130 20 C -0.321 4.321 21 C -0.140 4.140 22 N -0.215 5.215 23 C -0.297 4.297 24 S 0.411 5.589 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.165 0.835 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.199 0.801 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.183 -5.957 -18.586 19.776 hybrid contribution -0.538 0.825 1.309 1.638 sum -3.721 -5.132 -17.277 18.403 Atomic orbital electron populations 1.22561 0.94528 1.02918 1.03368 1.19960 0.93567 0.96682 0.85135 0.88329 1.60644 1.57271 1.09494 1.03324 1.22303 0.94230 0.95375 0.89049 0.90193 1.22870 0.97651 1.01239 0.95751 1.21822 0.98281 0.98464 0.94006 1.19453 0.92388 0.94165 0.92276 0.98442 1.21584 1.31474 1.11621 0.91980 0.93056 1.25748 0.95444 0.95923 1.01649 1.70096 1.38684 1.25173 1.22117 0.85619 0.78178 0.78936 0.79622 1.19110 1.20765 1.20679 1.22357 0.96998 0.99566 0.94036 1.26139 1.08493 0.96622 1.00863 1.21906 1.01532 1.01646 0.88943 1.66347 1.18891 1.02692 1.33524 1.28866 1.03787 0.97224 0.99797 1.84016 1.58064 1.04578 1.12272 0.90907 0.91382 0.92021 0.83532 0.91681 0.91505 0.95436 0.95540 0.93225 0.92756 0.93572 0.80098 0.75987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 8.96 71.98 0.65 -2.54 16 2 C 0.16 3.38 3.04 44.17 0.13 3.51 16 3 H 0.10 2.09 7.43 -2.39 -0.02 2.07 16 4 N -0.68 -17.52 5.94 -467.84 -2.78 -20.29 16 5 C 0.10 3.17 3.17 45.98 0.15 3.31 16 6 H 0.08 2.47 7.44 -2.39 -0.02 2.45 16 7 C -0.14 -4.49 5.13 31.32 0.16 -4.33 16 8 C -0.09 -3.96 5.60 31.32 0.18 -3.79 16 9 C 0.04 1.80 2.72 -10.47 -0.03 1.77 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 11 C -0.53 -29.34 8.37 25.60 0.21 -29.13 16 12 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 13 C 0.01 0.60 5.35 84.65 0.45 1.05 16 14 N -0.92 -53.99 12.63 21.45 0.27 -53.72 16 15 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 C -0.09 -3.67 5.96 31.88 0.19 -3.48 16 20 C -0.20 -4.25 5.53 24.64 0.14 -4.11 16 21 C 0.01 0.23 11.24 83.65 0.94 1.17 16 22 N -0.50 -11.62 10.54 -203.74 -2.15 -13.77 16 23 C 0.00 0.00 12.23 130.65 1.60 1.60 16 24 S 0.16 2.96 23.01 -56.49 -1.30 1.66 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.31 6.13 -2.39 -0.01 1.30 16 27 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 28 H 0.34 8.55 7.80 -89.69 -0.70 7.85 16 29 H 0.06 1.93 7.41 -2.39 -0.02 1.92 16 30 H 0.07 1.99 7.52 -2.39 -0.02 1.97 16 31 H 0.03 1.33 7.84 -2.39 -0.02 1.32 16 32 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.05 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.22 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -63.25 312.69 1.20 -62.05 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.36 Total: 12.99 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 4.76 Total: -34.96 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -4.65 Total: -87.79 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.30 Total: 1.66 kcal Total: -63.25 1.20 -62.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296469940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.680 kcal (2) G-P(sol) polarization free energy of solvation -63.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds