Wall clock time and date at job start Mon Mar 30 2020 07:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47237 * 2 1 4 4 N 1.46894 * 109.47124 * 120.00273 * 2 1 3 5 5 C 1.46899 * 110.99953 * 274.99727 * 4 2 1 6 6 H 1.08999 * 110.43573 * 323.91533 * 5 4 2 7 7 C 1.54261 * 110.48638 * 86.45518 * 5 4 2 8 8 C 1.53876 * 106.59990 * 142.41928 * 7 5 4 9 9 C 1.54267 * 106.59870 * 0.02562 * 8 7 5 10 10 H 1.09004 * 110.48597 * 95.06674 * 9 8 7 11 11 C 1.50701 * 110.48772 * 217.70999 * 9 8 7 12 12 H 1.08001 * 119.99746 * 118.54331 * 11 9 8 13 13 C 1.37877 * 120.00009 * 298.54805 * 11 9 8 14 14 N 1.31515 * 119.99767 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99922 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47413 * 89.99965 * 15 13 11 17 17 H 1.48500 * 109.46892 * 209.99748 * 15 13 11 18 18 H 1.48499 * 109.47002 * 329.99559 * 15 13 11 19 19 C 1.54888 * 110.60042 * 201.29796 * 5 4 2 20 20 C 1.50703 * 109.46922 * 240.00277 * 2 1 3 21 21 N 1.29029 * 124.91465 * 284.69263 * 20 2 1 22 22 C 1.31784 * 117.12117 * 179.80942 * 21 20 2 23 23 C 1.33632 * 114.50053 * 0.48066 * 22 21 20 24 24 S 1.70979 * 124.91673 * 104.99843 * 20 2 1 25 25 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46792 * 299.99990 * 1 2 3 27 27 H 1.09001 * 109.47223 * 59.99836 * 1 2 3 28 28 H 1.00904 * 110.99723 * 151.04481 * 4 2 1 29 29 H 1.08998 * 110.03492 * 23.13803 * 7 5 4 30 30 H 1.08994 * 110.03470 * 261.70379 * 7 5 4 31 31 H 1.08995 * 110.03160 * 119.28453 * 8 7 5 32 32 H 1.08998 * 110.03319 * 240.71542 * 8 7 5 33 33 H 0.97000 * 119.99775 * 180.02562 * 14 13 11 34 34 H 1.09005 * 110.75648 * 321.63748 * 19 5 4 35 35 H 1.08999 * 110.75852 * 85.00680 * 19 5 4 36 36 H 1.08001 * 122.74666 * 180.22341 * 22 21 20 37 37 H 1.08003 * 126.03764 * 179.78420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 1 2.3827 1.2191 2.0229 7 6 0.7206 0.2770 3.0691 8 6 1.0248 0.3729 4.5745 9 6 2.5611 0.3740 4.7143 10 1 2.9382 1.3951 4.7728 11 6 2.9809 -0.4150 5.9278 12 1 3.6020 -1.2911 5.8139 13 6 2.5718 -0.0183 7.1833 14 7 1.8158 1.0489 7.3219 15 14 3.0926 -0.9958 8.6875 16 1 4.3755 -0.4582 9.2074 17 1 2.0477 -0.8840 9.7367 18 1 3.2687 -2.4223 8.3142 19 6 3.0606 -0.3160 3.4203 20 6 2.0323 -0.7104 -1.2305 21 7 2.0255 -1.9896 -1.3993 22 6 2.4998 -2.4475 -2.5404 23 6 2.9400 -1.5027 -3.3766 24 16 2.7006 0.0616 -2.6020 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.9173 -1.1205 1.0286 29 1 0.1507 -0.6284 2.8604 30 1 0.1607 1.1542 2.7448 31 1 0.6127 1.2966 4.9806 32 1 0.6026 -0.4860 5.0962 33 1 1.5283 1.3282 8.2052 34 1 2.9824 -1.3999 3.5053 35 1 4.0844 -0.0180 3.1944 36 1 2.5340 -3.5004 -2.7783 37 1 3.3667 -1.6686 -4.3548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296613920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:24 Heat of formation + Delta-G solvation = 33.529350 kcal Electronic energy + Delta-G solvation = -17824.760177 eV Core-core repulsion = 15114.148878 eV Total energy + Delta-G solvation = -2710.611299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89591 -37.92840 -35.22191 -32.39540 -30.49185 -29.29829 -28.05159 -26.22151 -25.45520 -23.60201 -22.08838 -19.68651 -19.53109 -18.82754 -18.05459 -16.23266 -15.91921 -15.29447 -14.88304 -14.76796 -14.54066 -14.38016 -13.41473 -13.25686 -12.80120 -12.30478 -12.17371 -11.99253 -11.69451 -11.54248 -11.48094 -10.95227 -10.73579 -10.49565 -10.30433 -10.09067 -9.84795 -9.65612 -9.55756 -9.42306 -9.12841 -8.99953 -8.64607 -8.31439 -8.11531 -5.94657 -3.96836 0.54424 1.18427 1.58246 2.73515 3.34785 3.41517 3.45380 3.98580 4.40296 4.51061 4.83440 4.97996 5.21693 5.31969 5.33312 5.37617 5.58162 5.69577 5.77103 5.96340 5.99691 6.03283 6.27729 6.45304 6.57582 6.71229 6.84565 6.90821 7.04678 7.21403 7.42044 7.54250 7.67600 7.69254 7.81839 7.99178 8.09317 8.53464 9.05702 9.66788 11.14985 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.003775 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.965764 B = 7414.805049 C = 7692.947342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.059 0.941 4 N -0.661 5.661 5 C 0.078 3.922 6 H 0.039 0.961 7 C -0.114 4.114 8 C -0.094 4.094 9 C 0.051 3.949 10 H 0.026 0.974 11 C -0.512 4.512 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.115 4.115 20 C 0.056 3.944 21 N -0.452 5.452 22 C 0.040 3.960 23 C -0.265 4.265 24 S 0.106 5.894 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.342 0.658 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.258 0.742 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.175 0.825 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -1.187 -20.584 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.050 3.950 3 H 0.077 0.923 4 N -0.293 5.293 5 C -0.031 4.031 6 H 0.057 0.943 7 C -0.152 4.152 8 C -0.133 4.133 9 C 0.032 3.968 10 H 0.044 0.956 11 C -0.550 4.550 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.153 4.153 20 C -0.223 4.223 21 N -0.165 5.165 22 C -0.112 4.112 23 C -0.404 4.404 24 S 0.360 5.640 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.161 0.839 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.192 0.808 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.721 -0.632 -20.144 20.167 hybrid contribution 1.108 -0.914 0.263 1.460 sum 0.387 -1.546 -19.881 19.945 Atomic orbital electron populations 1.21886 0.92474 1.03380 1.01831 1.20225 0.96910 0.93699 0.84152 0.92292 1.60685 1.33576 1.32718 1.02351 1.22656 0.98066 0.92664 0.89737 0.94267 1.22358 0.95271 0.99877 0.97736 1.22039 0.99449 1.01025 0.90777 1.19385 0.91536 0.95357 0.90492 0.95615 1.21164 1.31345 1.11505 0.90983 0.92711 1.24972 0.95124 0.95057 0.98831 1.69977 1.35715 1.24292 1.22902 0.86658 0.78165 0.80629 0.82927 1.20836 1.21329 1.19927 1.22746 0.95643 1.00936 0.95972 1.27452 1.01734 0.92477 1.00670 1.66252 1.17170 1.12140 1.20964 1.21935 0.99001 1.01515 0.88705 1.27073 1.12141 0.94671 1.06545 1.84066 1.56697 1.11072 1.12139 0.91196 0.90627 0.93111 0.83921 0.91859 0.94102 0.92905 0.92979 0.93192 0.91468 0.93885 0.80777 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C 0.16 2.19 3.11 -68.86 -0.21 1.98 16 3 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 4 N -0.66 -10.44 6.10 -99.22 -0.61 -11.04 16 5 C 0.08 1.38 3.16 -66.06 -0.21 1.17 16 6 H 0.04 0.68 7.51 -51.93 -0.39 0.29 16 7 C -0.11 -2.17 4.91 -25.61 -0.13 -2.30 16 8 C -0.09 -2.22 5.40 -25.61 -0.14 -2.36 16 9 C 0.05 1.28 2.80 -90.10 -0.25 1.03 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.51 -14.19 8.40 -34.44 -0.29 -14.48 16 12 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 13 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 14 N -0.89 -25.79 12.35 55.43 0.68 -25.11 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -2.38 5.70 -24.73 -0.14 -2.52 16 20 C 0.06 0.70 5.90 -13.45 -0.08 0.62 16 21 N -0.45 -6.13 10.50 -11.86 -0.12 -6.25 16 22 C 0.04 0.42 11.35 -19.19 -0.22 0.21 16 23 C -0.27 -2.39 11.36 29.12 0.33 -2.06 16 24 S 0.11 1.06 23.18 -107.50 -2.49 -1.43 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.00 5.87 -51.93 -0.30 0.70 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.34 5.40 8.09 -39.29 -0.32 5.08 16 29 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 30 H 0.04 0.71 7.38 -51.93 -0.38 0.33 16 31 H 0.05 1.32 7.94 -51.93 -0.41 0.91 16 32 H 0.05 1.32 7.83 -51.93 -0.41 0.92 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -29.43 312.55 -9.46 -38.88 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.52 Total: 2.18 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.09 Total: -18.48 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.05 Total: -42.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.43 -9.46 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296613920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.411 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds