Wall clock time and date at job start Mon Mar 30 2020 07:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47237 * 2 1 4 4 N 1.46894 * 109.47124 * 120.00273 * 2 1 3 5 5 C 1.46899 * 110.99953 * 274.99727 * 4 2 1 6 6 H 1.08999 * 110.43573 * 323.91533 * 5 4 2 7 7 C 1.54261 * 110.48638 * 86.45518 * 5 4 2 8 8 C 1.53876 * 106.59990 * 142.41928 * 7 5 4 9 9 C 1.54267 * 106.59870 * 0.02562 * 8 7 5 10 10 H 1.09004 * 110.48597 * 95.06674 * 9 8 7 11 11 C 1.50701 * 110.48772 * 217.70999 * 9 8 7 12 12 H 1.08001 * 119.99746 * 118.54331 * 11 9 8 13 13 C 1.37877 * 120.00009 * 298.54805 * 11 9 8 14 14 N 1.31515 * 119.99767 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99922 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47413 * 89.99965 * 15 13 11 17 17 H 1.48500 * 109.46892 * 209.99748 * 15 13 11 18 18 H 1.48499 * 109.47002 * 329.99559 * 15 13 11 19 19 C 1.54888 * 110.60042 * 201.29796 * 5 4 2 20 20 C 1.50703 * 109.46922 * 240.00277 * 2 1 3 21 21 N 1.29029 * 124.91465 * 284.69263 * 20 2 1 22 22 C 1.31784 * 117.12117 * 179.80942 * 21 20 2 23 23 C 1.33632 * 114.50053 * 0.48066 * 22 21 20 24 24 S 1.70979 * 124.91673 * 104.99843 * 20 2 1 25 25 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46792 * 299.99990 * 1 2 3 27 27 H 1.09001 * 109.47223 * 59.99836 * 1 2 3 28 28 H 1.00904 * 110.99723 * 151.04481 * 4 2 1 29 29 H 1.08998 * 110.03492 * 23.13803 * 7 5 4 30 30 H 1.08994 * 110.03470 * 261.70379 * 7 5 4 31 31 H 1.08995 * 110.03160 * 119.28453 * 8 7 5 32 32 H 1.08998 * 110.03319 * 240.71542 * 8 7 5 33 33 H 0.97000 * 119.99775 * 180.02562 * 14 13 11 34 34 H 1.09005 * 110.75648 * 321.63748 * 19 5 4 35 35 H 1.08999 * 110.75852 * 85.00680 * 19 5 4 36 36 H 1.08001 * 122.74666 * 180.22341 * 22 21 20 37 37 H 1.08003 * 126.03764 * 179.78420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 1 2.3827 1.2191 2.0229 7 6 0.7206 0.2770 3.0691 8 6 1.0248 0.3729 4.5745 9 6 2.5611 0.3740 4.7143 10 1 2.9382 1.3951 4.7728 11 6 2.9809 -0.4150 5.9278 12 1 3.6020 -1.2911 5.8139 13 6 2.5718 -0.0183 7.1833 14 7 1.8158 1.0489 7.3219 15 14 3.0926 -0.9958 8.6875 16 1 4.3755 -0.4582 9.2074 17 1 2.0477 -0.8840 9.7367 18 1 3.2687 -2.4223 8.3142 19 6 3.0606 -0.3160 3.4203 20 6 2.0323 -0.7104 -1.2305 21 7 2.0255 -1.9896 -1.3993 22 6 2.4998 -2.4475 -2.5404 23 6 2.9400 -1.5027 -3.3766 24 16 2.7006 0.0616 -2.6020 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.9173 -1.1205 1.0286 29 1 0.1507 -0.6284 2.8604 30 1 0.1607 1.1542 2.7448 31 1 0.6127 1.2966 4.9806 32 1 0.6026 -0.4860 5.0962 33 1 1.5283 1.3282 8.2052 34 1 2.9824 -1.3999 3.5053 35 1 4.0844 -0.0180 3.1944 36 1 2.5340 -3.5004 -2.7783 37 1 3.3667 -1.6686 -4.3548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296613920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:23 Heat of formation + Delta-G solvation = 15.016271 kcal Electronic energy + Delta-G solvation = -17825.562965 eV Core-core repulsion = 15114.148878 eV Total energy + Delta-G solvation = -2711.414087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77105 -39.41080 -36.64036 -34.32708 -31.76609 -30.31623 -29.80562 -27.76651 -26.56701 -25.39963 -23.04995 -21.21242 -20.90041 -20.23863 -18.97688 -18.24543 -16.86771 -16.74498 -16.57869 -15.89422 -15.80990 -15.59739 -14.63091 -14.48789 -14.22184 -14.05719 -13.56388 -13.26988 -13.11143 -12.86494 -12.66059 -12.52688 -12.40810 -12.35279 -11.87905 -11.75257 -11.52541 -11.32835 -10.96778 -10.69873 -10.50995 -10.44878 -10.34536 -9.83866 -9.36957 -8.09900 -6.19079 -0.24893 0.40771 0.80971 1.41256 1.42285 1.52598 1.92191 2.44987 3.11515 3.20860 3.22184 3.87244 4.02027 4.11936 4.29871 4.33499 4.40593 4.42309 4.58666 4.67004 4.83177 4.88454 4.95046 5.01971 5.16697 5.18261 5.22044 5.27224 5.38415 5.48363 5.54233 5.70623 5.94069 6.02176 6.19964 6.42360 6.43381 6.87023 6.91656 7.47916 8.98989 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.003775 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.965764 B = 7414.805049 C = 7692.947342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.162 3.838 3 H 0.071 0.929 4 N -0.665 5.665 5 C 0.094 3.906 6 H 0.051 0.949 7 C -0.101 4.101 8 C -0.085 4.085 9 C 0.040 3.960 10 H 0.000 1.000 11 C -0.532 4.532 12 H 0.051 0.949 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.105 4.105 20 C 0.026 3.974 21 N -0.482 5.482 22 C 0.016 3.984 23 C -0.248 4.248 24 S 0.141 5.859 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.343 0.657 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.193 0.807 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 -1.445 -22.686 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 H 0.088 0.912 4 N -0.298 5.298 5 C -0.015 4.015 6 H 0.069 0.931 7 C -0.140 4.140 8 C -0.124 4.124 9 C 0.022 3.978 10 H 0.018 0.982 11 C -0.571 4.571 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.777 3.223 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.143 4.143 20 C -0.252 4.252 21 N -0.197 5.197 22 C -0.134 4.134 23 C -0.387 4.387 24 S 0.394 5.606 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.210 0.790 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.138 -0.893 -22.258 22.276 hybrid contribution 0.960 -0.828 0.825 1.513 sum 0.822 -1.722 -21.433 21.518 Atomic orbital electron populations 1.21836 0.92257 1.02512 1.02525 1.20233 0.97085 0.94097 0.83643 0.91175 1.60571 1.33686 1.32566 1.02985 1.22364 0.95945 0.93440 0.89791 0.93068 1.22215 0.96440 1.00915 0.94393 1.21828 0.98282 0.98457 0.93789 1.19388 0.92518 0.94006 0.91936 0.98199 1.21543 1.31352 1.11683 0.92477 0.93123 1.25745 0.95179 0.96045 1.01731 1.70097 1.36603 1.25592 1.23509 0.85655 0.77948 0.79325 0.79337 1.20063 1.20943 1.19421 1.22555 0.96965 0.99835 0.94952 1.27220 1.03559 0.92760 1.01612 1.66225 1.17895 1.12966 1.22641 1.22262 0.99854 1.02865 0.88439 1.27514 1.10125 0.93756 1.07276 1.83916 1.55361 1.10895 1.10385 0.92792 0.91257 0.91043 0.83842 0.91787 0.91971 0.95160 0.95795 0.93172 0.92509 0.92839 0.79003 0.77486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.19 71.98 0.66 -2.52 16 2 C 0.16 4.08 3.11 44.17 0.14 4.21 16 3 H 0.07 1.61 7.47 -2.39 -0.02 1.59 16 4 N -0.67 -20.28 6.10 -467.84 -2.86 -23.14 16 5 C 0.09 3.26 3.16 45.99 0.15 3.40 16 6 H 0.05 1.68 7.51 -2.39 -0.02 1.66 16 7 C -0.10 -3.82 4.91 31.32 0.15 -3.67 16 8 C -0.08 -4.12 5.40 31.32 0.17 -3.95 16 9 C 0.04 2.07 2.80 -10.46 -0.03 2.04 16 10 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 11 C -0.53 -30.21 8.40 25.60 0.22 -30.00 16 12 H 0.05 2.84 7.77 -2.91 -0.02 2.81 16 13 C 0.01 0.66 5.33 84.65 0.45 1.11 16 14 N -0.92 -54.50 12.35 21.45 0.26 -54.23 16 15 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 C -0.11 -4.35 5.70 31.89 0.18 -4.17 16 20 C 0.03 0.62 5.90 88.52 0.52 1.14 16 21 N -0.48 -12.39 10.50 -191.44 -2.01 -14.40 16 22 C 0.02 0.31 11.35 83.65 0.95 1.26 16 23 C -0.25 -3.64 11.36 66.77 0.76 -2.89 16 24 S 0.14 2.41 23.18 -56.49 -1.31 1.10 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.72 5.87 -2.39 -0.01 1.71 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.34 10.47 8.09 -89.69 -0.73 9.74 16 29 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 30 H 0.06 2.09 7.38 -2.39 -0.02 2.07 16 31 H 0.03 1.55 7.94 -2.39 -0.02 1.53 16 32 H 0.02 1.24 7.83 -2.39 -0.02 1.23 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.06 2.46 8.05 -2.38 -0.02 2.44 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -64.45 312.55 0.77 -63.69 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.33 Total: 14.24 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 4.32 Total: -34.02 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -4.60 Total: -91.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -64.45 0.77 -63.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296613920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.702 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds