Wall clock time and date at job start Mon Mar 30 2020 07:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47391 * 2 1 4 4 S 1.81401 * 109.47253 * 120.00381 * 2 1 3 5 5 C 1.81408 * 102.99864 * 64.99330 * 4 2 1 6 6 C 1.53000 * 109.46799 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.39250 * 119.99914 * 180.02562 * 7 6 5 9 9 C 1.39711 * 120.78162 * 359.72454 * 8 7 6 10 10 C 1.38457 * 119.46643 * 179.77445 * 9 8 7 11 11 N 1.31528 * 121.11182 * 0.51249 * 10 9 8 12 12 C 1.33695 * 121.69846 * 359.73685 * 11 10 9 13 13 C 1.41453 * 119.79953 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00211 * 179.97438 * 13 12 11 15 15 C 1.40008 * 119.99623 * 359.97438 * 13 12 11 16 16 N 1.30754 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00071 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46979 * 60.00232 * 17 15 13 19 19 H 1.48497 * 109.47300 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46991 * 300.00610 * 17 15 13 21 21 C 1.39026 * 120.78139 * 180.02562 * 8 7 6 22 22 H 1.09003 * 109.46404 * 300.00318 * 1 2 3 23 23 H 1.09001 * 109.46618 * 59.99294 * 1 2 3 24 24 H 1.08993 * 109.47599 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46438 * 240.00234 * 2 1 3 26 26 H 1.09006 * 109.47377 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47816 * 299.99972 * 3 2 1 28 28 H 1.09003 * 109.47606 * 60.00418 * 3 2 1 29 29 H 1.09001 * 109.46823 * 60.00210 * 5 4 2 30 30 H 1.08992 * 109.47429 * 300.00246 * 5 4 2 31 31 H 1.09002 * 109.47398 * 300.00340 * 6 5 4 32 32 H 1.09001 * 109.47194 * 60.00520 * 6 5 4 33 33 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 34 34 H 1.07999 * 120.26370 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.43912 * 180.25249 * 10 9 8 36 36 H 0.96997 * 120.00027 * 179.97438 * 16 15 13 37 37 H 1.07992 * 120.56139 * 0.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1348 -0.8552 1.4811 5 6 1.5663 -2.5594 1.2289 6 6 2.0049 -3.4237 2.4127 7 7 1.5464 -4.8000 2.2088 8 6 1.8282 -5.7761 3.1611 9 6 2.5518 -5.4621 4.3143 10 6 2.8125 -6.4529 5.2456 11 7 2.3990 -7.6874 5.0585 12 6 1.7076 -8.0392 3.9696 13 6 1.2821 -9.3787 3.8094 14 1 0.7231 -9.6664 2.9313 15 6 1.5856 -10.3314 4.7894 16 7 2.2619 -9.9830 5.8528 17 14 1.0243 -12.1006 4.5776 18 1 1.6149 -12.6621 3.3362 19 1 1.4683 -12.9039 5.7450 20 1 -0.4572 -12.1419 4.4836 21 6 1.4014 -7.0873 2.9839 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6769 1.9563 0.8900 29 1 2.0000 -2.9548 0.3104 30 1 0.4792 -2.5722 1.1522 31 1 3.0922 -3.4108 2.4889 32 1 1.5716 -3.0284 3.3315 33 1 1.0466 -5.0315 1.4104 34 1 2.9021 -4.4540 4.4794 35 1 3.3683 -6.2088 6.1388 36 1 2.4719 -10.6431 6.5318 37 1 0.8441 -7.3690 2.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309314467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:05 Heat of formation + Delta-G solvation = 19.125413 kcal Electronic energy + Delta-G solvation = -16894.933694 eV Core-core repulsion = 14183.697793 eV Total energy + Delta-G solvation = -2711.235901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.29147 -35.83241 -35.07683 -33.36069 -31.33622 -29.81837 -27.93198 -27.31698 -25.66064 -23.25786 -21.96719 -21.40676 -20.39765 -17.65642 -16.57770 -15.90300 -15.47931 -15.29220 -15.10895 -14.78764 -14.32846 -14.02862 -13.69748 -13.22759 -12.92030 -12.67236 -12.55118 -12.17857 -12.05475 -11.83666 -11.69658 -11.56719 -11.38333 -11.11622 -11.06595 -10.62122 -10.37608 -10.01678 -9.73313 -9.72239 -9.08472 -7.86319 -7.54190 -7.43078 -6.68749 -6.29445 -4.44800 1.37261 2.34920 2.87199 3.12622 3.14870 3.22375 3.38539 4.00273 4.22919 4.42579 4.50847 4.78738 4.81237 4.87010 4.90494 5.20910 5.26079 5.36296 5.39685 5.48624 5.76901 5.79051 5.90017 5.95801 6.09131 6.17828 6.49602 6.72483 6.95334 7.13973 7.22523 7.52085 7.65762 7.72180 8.30082 8.41076 8.47508 8.81942 9.06962 10.28183 10.44170 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054482 B = 0.003006 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.812239 B = 9311.418640 C = 9723.026560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C -0.132 4.132 4 S -0.244 6.244 5 C -0.098 4.098 6 C 0.153 3.847 7 N -0.754 5.754 8 C 0.254 3.746 9 C -0.370 4.370 10 C 0.150 3.850 11 N -0.506 5.506 12 C 0.282 3.718 13 C -0.436 4.436 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.716 5.716 17 Si 0.905 3.095 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.344 4.344 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.389 0.611 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.271 0.729 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 15.798 -9.869 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C -0.191 4.191 4 S -0.018 6.018 5 C -0.247 4.247 6 C 0.027 3.973 7 N -0.389 5.389 8 C 0.149 3.851 9 C -0.398 4.398 10 C -0.017 4.017 11 N -0.220 5.220 12 C 0.158 3.842 13 C -0.467 4.467 14 H 0.098 0.902 15 C -0.154 4.154 16 N -0.338 5.338 17 Si 0.730 3.270 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.371 4.371 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.222 0.778 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.108 15.604 -8.126 17.628 hybrid contribution -1.305 -0.647 -2.122 2.574 sum -2.413 14.957 -10.249 18.291 Atomic orbital electron populations 1.22110 0.93261 1.02547 1.02893 1.23097 0.98821 0.99543 0.97734 1.21599 1.01874 0.92886 1.02719 1.86910 1.75627 1.07010 1.32256 1.23547 1.03981 0.94330 1.02805 1.20681 0.99325 0.81949 0.95300 1.44265 1.64247 1.06253 1.24132 1.17625 0.91956 0.87646 0.87868 1.20863 1.18584 1.00056 1.00299 1.22303 0.94146 0.89622 0.95650 1.68761 1.15379 1.15675 1.22198 1.18333 0.87153 0.92521 0.86224 1.19531 1.30228 0.92029 1.04897 0.90194 1.26061 0.94013 1.00713 0.94653 1.70152 1.23899 1.34423 1.05279 0.86437 0.79992 0.81874 0.78732 1.19029 1.20273 1.19034 1.21145 1.18463 0.92502 1.04978 0.91235 0.91801 0.92424 0.89586 0.91595 0.91182 0.91601 0.89780 0.89650 0.92089 0.92068 0.77777 0.89007 0.86570 0.91731 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.10 37.16 0.34 -0.78 16 2 C -0.06 -0.52 3.38 -26.73 -0.09 -0.61 16 3 C -0.13 -0.92 9.20 37.15 0.34 -0.58 16 4 S -0.24 -2.76 21.15 -107.50 -2.27 -5.03 16 5 C -0.10 -1.13 5.75 37.16 0.21 -0.92 16 6 C 0.15 2.30 4.95 -4.04 -0.02 2.28 16 7 N -0.75 -13.41 5.72 -58.50 -0.33 -13.75 16 8 C 0.25 5.81 6.69 -83.65 -0.56 5.25 16 9 C -0.37 -8.62 9.40 -38.95 -0.37 -8.99 16 10 C 0.15 3.78 11.17 -17.60 -0.20 3.59 16 11 N -0.51 -14.46 7.86 -11.21 -0.09 -14.55 16 12 C 0.28 7.99 6.55 -85.01 -0.56 7.43 16 13 C -0.44 -12.03 9.14 -37.70 -0.34 -12.38 16 14 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 15 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 16 N -0.72 -19.65 11.46 55.55 0.64 -19.01 16 17 Si 0.91 19.03 29.56 -169.99 -5.02 14.00 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.34 -8.70 9.72 -38.47 -0.37 -9.07 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.45 6.92 -51.93 -0.36 0.10 16 25 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.08 0.92 7.14 -51.93 -0.37 0.55 16 31 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 32 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 33 H 0.39 6.13 8.50 -40.82 -0.35 5.78 16 34 H 0.09 1.93 6.87 -52.49 -0.36 1.56 16 35 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 36 H 0.27 6.75 8.29 -40.82 -0.34 6.41 16 37 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -30.36 322.28 -9.56 -39.91 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.62 Total: 6.59 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.71 Total: -13.02 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.21 Total: -47.31 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.27 Total: -5.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.36 -9.56 -39.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309314467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.040 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds