Wall clock time and date at job start Mon Mar 30 2020 07:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47391 * 2 1 4 4 S 1.81401 * 109.47253 * 120.00381 * 2 1 3 5 5 C 1.81408 * 102.99864 * 64.99330 * 4 2 1 6 6 C 1.53000 * 109.46799 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.39250 * 119.99914 * 180.02562 * 7 6 5 9 9 C 1.39711 * 120.78162 * 359.72454 * 8 7 6 10 10 C 1.38457 * 119.46643 * 179.77445 * 9 8 7 11 11 N 1.31528 * 121.11182 * 0.51249 * 10 9 8 12 12 C 1.33695 * 121.69846 * 359.73685 * 11 10 9 13 13 C 1.41453 * 119.79953 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00211 * 179.97438 * 13 12 11 15 15 C 1.40008 * 119.99623 * 359.97438 * 13 12 11 16 16 N 1.30754 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00071 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46979 * 60.00232 * 17 15 13 19 19 H 1.48497 * 109.47300 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46991 * 300.00610 * 17 15 13 21 21 C 1.39026 * 120.78139 * 180.02562 * 8 7 6 22 22 H 1.09003 * 109.46404 * 300.00318 * 1 2 3 23 23 H 1.09001 * 109.46618 * 59.99294 * 1 2 3 24 24 H 1.08993 * 109.47599 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46438 * 240.00234 * 2 1 3 26 26 H 1.09006 * 109.47377 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47816 * 299.99972 * 3 2 1 28 28 H 1.09003 * 109.47606 * 60.00418 * 3 2 1 29 29 H 1.09001 * 109.46823 * 60.00210 * 5 4 2 30 30 H 1.08992 * 109.47429 * 300.00246 * 5 4 2 31 31 H 1.09002 * 109.47398 * 300.00340 * 6 5 4 32 32 H 1.09001 * 109.47194 * 60.00520 * 6 5 4 33 33 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 34 34 H 1.07999 * 120.26370 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.43912 * 180.25249 * 10 9 8 36 36 H 0.96997 * 120.00027 * 179.97438 * 16 15 13 37 37 H 1.07992 * 120.56139 * 0.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1348 -0.8552 1.4811 5 6 1.5663 -2.5594 1.2289 6 6 2.0049 -3.4237 2.4127 7 7 1.5464 -4.8000 2.2088 8 6 1.8282 -5.7761 3.1611 9 6 2.5518 -5.4621 4.3143 10 6 2.8125 -6.4529 5.2456 11 7 2.3990 -7.6874 5.0585 12 6 1.7076 -8.0392 3.9696 13 6 1.2821 -9.3787 3.8094 14 1 0.7231 -9.6664 2.9313 15 6 1.5856 -10.3314 4.7894 16 7 2.2619 -9.9830 5.8528 17 14 1.0243 -12.1006 4.5776 18 1 1.6149 -12.6621 3.3362 19 1 1.4683 -12.9039 5.7450 20 1 -0.4572 -12.1419 4.4836 21 6 1.4014 -7.0873 2.9839 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6769 1.9563 0.8900 29 1 2.0000 -2.9548 0.3104 30 1 0.4792 -2.5722 1.1522 31 1 3.0922 -3.4108 2.4889 32 1 1.5716 -3.0284 3.3315 33 1 1.0466 -5.0315 1.4104 34 1 2.9021 -4.4540 4.4794 35 1 3.3683 -6.2088 6.1388 36 1 2.4719 -10.6431 6.5318 37 1 0.8441 -7.3690 2.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309314467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:04 Heat of formation + Delta-G solvation = 1.690811 kcal Electronic energy + Delta-G solvation = -16895.689715 eV Core-core repulsion = 14183.697793 eV Total energy + Delta-G solvation = -2711.991922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15560 -37.41935 -35.68097 -35.26523 -32.83221 -31.77911 -29.34293 -28.12473 -27.57776 -24.54397 -23.39985 -22.69806 -22.07769 -19.49040 -17.70074 -17.38584 -16.96229 -16.60686 -16.35447 -16.00728 -15.80531 -15.41416 -14.87881 -14.47709 -14.40027 -14.14720 -14.03243 -13.31435 -13.25187 -13.10118 -12.84742 -12.77020 -12.61435 -12.36991 -12.22760 -12.10185 -12.07204 -11.60459 -11.41330 -10.95171 -10.79974 -9.53925 -9.41972 -8.74457 -8.40489 -8.23239 -6.49569 0.52363 0.97524 1.39080 1.41713 1.53941 1.54726 1.60696 2.25499 2.76539 2.91374 3.68786 3.81532 3.86308 3.92270 4.04984 4.28520 4.30699 4.32405 4.65663 4.70137 4.71552 4.73233 4.78275 4.84172 4.84476 4.93926 5.06281 5.22377 5.22572 5.24166 5.38901 5.67675 5.71709 5.84573 6.30051 6.57429 6.80720 6.96091 7.09509 8.31943 8.51832 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054482 B = 0.003006 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.812239 B = 9311.418640 C = 9723.026560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.131 4.131 4 S -0.283 6.283 5 C -0.084 4.084 6 C 0.155 3.845 7 N -0.741 5.741 8 C 0.261 3.739 9 C -0.367 4.367 10 C 0.132 3.868 11 N -0.545 5.545 12 C 0.249 3.751 13 C -0.473 4.473 14 H 0.086 0.914 15 C 0.023 3.977 16 N -0.757 5.757 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.364 4.364 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.401 0.599 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.278 0.722 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 16.722 -11.467 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.190 4.190 4 S -0.057 6.057 5 C -0.232 4.232 6 C 0.030 3.970 7 N -0.374 5.374 8 C 0.153 3.847 9 C -0.395 4.395 10 C -0.034 4.034 11 N -0.260 5.260 12 C 0.125 3.875 13 C -0.504 4.504 14 H 0.104 0.896 15 C -0.198 4.198 16 N -0.379 5.379 17 Si 0.808 3.192 18 H -0.183 1.183 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.391 4.391 22 H 0.083 0.917 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.088 0.912 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.770 16.585 -9.754 19.322 hybrid contribution -1.072 -0.692 -1.684 2.113 sum -2.842 15.893 -11.438 19.786 Atomic orbital electron populations 1.22100 0.92474 1.02495 1.03591 1.23215 0.99351 0.99731 0.95837 1.21622 1.01682 0.92081 1.03568 1.87073 1.76294 1.07260 1.35097 1.23346 1.04590 0.93885 1.01395 1.20742 0.98819 0.80695 0.96793 1.44277 1.63337 1.06535 1.23285 1.17670 0.90648 0.87912 0.88478 1.21094 1.17862 1.00697 0.99884 1.22729 0.94301 0.89426 0.96918 1.68711 1.16876 1.17324 1.23127 1.18798 0.87860 0.93760 0.87127 1.19918 1.31608 0.92836 1.06046 0.89623 1.27030 0.93564 1.05444 0.93777 1.70260 1.25064 1.36351 1.06248 0.85194 0.79598 0.75385 0.79034 1.18280 1.19229 1.18283 1.21240 1.19470 0.93369 1.05020 0.91747 0.89867 0.92852 0.88789 0.91969 0.88970 0.92015 0.88726 0.88604 0.92753 0.92734 0.76395 0.86593 0.84684 0.91161 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.10 71.98 0.66 -1.17 16 2 C -0.05 -0.75 3.38 30.59 0.10 -0.64 16 3 C -0.13 -1.51 9.20 71.98 0.66 -0.85 16 4 S -0.28 -5.93 21.15 -56.49 -1.19 -7.12 16 5 C -0.08 -1.76 5.75 71.98 0.41 -1.34 16 6 C 0.15 4.38 4.95 86.38 0.43 4.81 16 7 N -0.74 -25.17 5.72 -338.99 -1.94 -27.11 16 8 C 0.26 11.79 6.69 38.51 0.26 12.05 16 9 C -0.37 -16.94 9.40 22.68 0.21 -16.73 16 10 C 0.13 6.74 11.17 84.79 0.95 7.68 16 11 N -0.54 -32.06 7.86 -189.37 -1.49 -33.54 16 12 C 0.25 14.51 6.55 40.18 0.26 14.78 16 13 C -0.47 -26.82 9.14 23.49 0.21 -26.60 16 14 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 15 C 0.02 1.23 5.50 85.28 0.47 1.70 16 16 N -0.76 -42.61 11.46 21.83 0.25 -42.36 16 17 Si 0.99 39.32 29.56 68.60 2.03 41.35 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 21 C -0.36 -18.63 9.72 22.99 0.22 -18.41 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.05 0.71 6.92 -2.39 -0.02 0.69 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 1.83 7.14 -2.39 -0.02 1.81 16 31 H 0.05 1.65 7.98 -2.39 -0.02 1.63 16 32 H 0.05 1.65 8.00 -2.39 -0.02 1.63 16 33 H 0.40 11.85 8.50 -92.71 -0.79 11.06 16 34 H 0.12 4.70 6.87 -2.91 -0.02 4.68 16 35 H 0.14 6.14 8.06 -2.91 -0.02 6.11 16 36 H 0.28 14.10 8.29 -92.71 -0.77 13.34 16 37 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -67.01 322.28 2.77 -64.24 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.27 Total: 29.27 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.85 Total: -24.72 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -3.18 Total: -103.01 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -1.19 Total: -7.12 kcal Total: -67.01 2.77 -64.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309314467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.932 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds