Wall clock time and date at job start Mon Mar 30 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28331 * 124.90502 * 2 1 4 4 C 1.33488 * 117.83832 * 180.02562 * 3 2 1 5 5 C 1.33869 * 113.18162 * 0.07016 * 4 3 2 6 6 S 1.70753 * 124.90112 * 180.02562 * 2 1 3 7 7 C 1.51708 * 110.89054 * 179.97438 * 5 4 3 8 8 C 1.54304 * 104.80989 * 342.76473 * 7 5 4 9 9 C 1.52615 * 137.15370 * 180.09692 * 4 3 2 10 10 H 1.09002 * 110.31988 * 78.47272 * 9 4 3 11 11 C 1.52998 * 110.40214 * 316.32248 * 9 4 3 12 12 N 1.46898 * 109.47475 * 67.87129 * 11 9 4 13 13 C 1.46899 * 111.00493 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46588 * 325.00250 * 13 12 11 15 15 C 1.53001 * 109.47035 * 84.99909 * 13 12 11 16 16 C 1.50696 * 109.47457 * 205.00292 * 13 12 11 17 17 H 1.08004 * 119.99899 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00287 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00123 * 179.97438 * 18 16 13 20 20 Si 1.86799 * 119.99878 * 359.97438 * 18 16 13 21 21 H 1.48495 * 109.47273 * 89.99699 * 20 18 16 22 22 H 1.48501 * 109.47305 * 209.99978 * 20 18 16 23 23 H 1.48507 * 109.47079 * 329.99958 * 20 18 16 24 24 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47406 * 299.98590 * 1 2 3 26 26 H 1.09000 * 109.46980 * 59.98496 * 1 2 3 27 27 H 1.09012 * 110.36856 * 223.93179 * 7 5 4 28 28 H 1.09000 * 110.37272 * 101.60108 * 7 5 4 29 29 H 1.08999 * 110.97285 * 268.08412 * 8 7 5 30 30 H 1.08996 * 110.97034 * 144.31109 * 8 7 5 31 31 H 1.09006 * 109.47319 * 187.87187 * 11 9 4 32 32 H 1.09001 * 109.47177 * 307.86972 * 11 9 4 33 33 H 1.00898 * 110.99982 * 303.95516 * 12 11 9 34 34 H 1.08998 * 109.47021 * 60.00275 * 15 13 12 35 35 H 1.08999 * 109.46981 * 180.02562 * 15 13 12 36 36 H 1.08998 * 109.47043 * 300.00225 * 15 13 12 37 37 H 0.96996 * 120.00151 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2414 1.0524 0.0000 4 6 3.5661 0.8882 -0.0005 5 6 3.9377 -0.3979 -0.0025 6 16 2.4840 -1.4004 -0.0006 7 6 5.4495 -0.5242 -0.0036 8 6 5.9609 0.8634 -0.4441 9 6 4.8042 1.7805 0.0010 10 1 4.9920 2.1656 1.0033 11 6 4.6304 2.9357 -0.9871 12 7 3.5833 3.8435 -0.4999 13 6 3.3888 4.9677 -1.4251 14 1 4.3468 5.2470 -1.8639 15 6 2.4210 4.5530 -2.5353 16 6 2.8182 6.1433 -0.6745 17 1 2.6203 6.0634 0.3843 18 6 2.5499 7.3212 -1.3390 19 7 2.0515 8.3469 -0.6839 20 14 2.8942 7.4601 -3.1697 21 1 1.6899 7.0448 -3.9328 22 1 3.2317 8.8669 -3.5046 23 1 4.0349 6.5788 -3.5271 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5136 0.8901 26 1 -0.3633 0.5141 -0.8899 27 1 5.7659 -1.2882 -0.7139 28 1 5.8112 -0.7619 0.9967 29 1 6.0965 0.9042 -1.5249 30 1 6.8848 1.1211 0.0736 31 1 5.5701 3.4805 -1.0781 32 1 4.3439 2.5402 -1.9616 33 1 2.7181 3.3478 -0.3457 34 1 1.4631 4.2737 -2.0965 35 1 2.2770 5.3871 -3.2221 36 1 2.8337 3.7028 -3.0782 37 1 1.8630 9.1756 -1.1513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309347771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:17 Heat of formation + Delta-G solvation = 51.465344 kcal Electronic energy + Delta-G solvation = -18136.050508 eV Core-core repulsion = 15426.216972 eV Total energy + Delta-G solvation = -2709.833536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43513 -36.91343 -35.65961 -32.45694 -31.10258 -30.48242 -27.62188 -26.75749 -24.99426 -23.43526 -22.53853 -20.69553 -19.98338 -18.80955 -17.68764 -16.68271 -15.88750 -14.82591 -14.65759 -14.23804 -14.07549 -13.99774 -13.82667 -13.36034 -12.73563 -12.62620 -12.50699 -12.25763 -12.14306 -11.92699 -11.73438 -11.67936 -11.14259 -11.00707 -10.85556 -10.59889 -10.22019 -10.02147 -9.41952 -9.36078 -9.19034 -9.03629 -8.48297 -8.46130 -7.24403 -5.95753 -3.91785 0.77947 1.22582 1.77712 2.85726 3.31565 3.41008 3.43689 3.77767 4.44032 4.48239 4.65588 4.82427 4.99151 5.21137 5.22749 5.34992 5.41839 5.49006 5.51004 5.65078 5.76633 5.78876 5.80236 5.85536 6.03203 6.13957 6.30189 6.32988 6.39088 6.48733 6.64249 6.85686 7.26261 7.82961 7.84466 8.06712 8.60443 8.82346 9.16759 9.67844 11.18114 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.005241 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.958904 B = 5341.513802 C = 5976.479173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.454 5.454 4 C 0.070 3.930 5 C -0.260 4.260 6 S 0.106 5.894 7 C -0.033 4.033 8 C -0.111 4.111 9 C -0.011 4.011 10 H 0.102 0.898 11 C 0.068 3.932 12 N -0.675 5.675 13 C 0.183 3.817 14 H 0.031 0.969 15 C -0.179 4.179 16 C -0.492 4.492 17 H 0.081 0.919 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.886 3.114 21 H -0.282 1.282 22 H -0.297 1.297 23 H -0.270 1.270 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.017 0.983 33 H 0.346 0.654 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -22.054 -0.052 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.220 4.220 3 N -0.168 5.168 4 C -0.060 4.060 5 C -0.380 4.380 6 S 0.362 5.638 7 C -0.073 4.073 8 C -0.151 4.151 9 C -0.033 4.033 10 H 0.120 0.880 11 C -0.063 4.063 12 N -0.306 5.306 13 C 0.074 3.926 14 H 0.048 0.952 15 C -0.238 4.238 16 C -0.531 4.531 17 H 0.099 0.901 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.196 1.196 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.166 0.834 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.250 -22.092 0.358 22.333 hybrid contribution 0.023 0.431 -1.838 1.888 sum 3.273 -21.661 -1.480 21.957 Atomic orbital electron populations 1.20444 0.85069 1.03151 1.04913 1.26843 1.01529 0.89902 1.03716 1.65284 1.04583 1.31723 1.15193 1.21705 0.89987 0.93679 1.00625 1.26943 1.01119 0.96686 1.13286 1.83517 0.97127 1.12289 1.70916 1.20620 0.86058 0.98535 1.02115 1.22416 0.97755 0.92770 1.02154 1.20772 0.87170 0.93248 1.02073 0.88022 1.21914 0.97681 0.92467 0.94214 1.60624 1.11555 1.10419 1.48051 1.19617 0.94173 0.90140 0.88718 0.95162 1.22820 1.01818 0.98639 1.00475 1.21011 1.40539 0.94066 0.97475 0.90097 1.24936 0.95073 0.95801 0.97685 1.69888 1.45045 1.03321 1.36044 0.86891 0.78718 0.75952 0.86717 1.20906 1.22515 1.19564 0.90450 0.89130 0.89242 0.90712 0.89921 0.90324 0.89310 0.91035 0.96474 0.83358 0.92789 0.93896 0.95863 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.47 36.01 0.38 -0.37 16 2 C 0.06 0.81 7.37 -13.74 -0.10 0.71 16 3 N -0.45 -7.62 9.24 -7.23 -0.07 -7.69 16 4 C 0.07 1.10 6.67 -82.45 -0.55 0.55 16 5 C -0.26 -3.40 7.42 -35.35 -0.26 -3.66 16 6 S 0.11 1.21 23.17 -107.50 -2.49 -1.29 16 7 C -0.03 -0.33 6.80 -26.70 -0.18 -0.51 16 8 C -0.11 -1.17 6.63 -25.43 -0.17 -1.34 16 9 C -0.01 -0.17 3.13 -90.20 -0.28 -0.45 16 10 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 11 C 0.07 1.21 4.88 -3.83 -0.02 1.19 16 12 N -0.67 -15.06 6.23 -107.95 -0.67 -15.73 16 13 C 0.18 4.60 2.17 -68.87 -0.15 4.45 16 14 H 0.03 0.78 6.85 -51.93 -0.36 0.43 16 15 C -0.18 -4.20 8.64 37.16 0.32 -3.88 16 16 C -0.49 -14.59 9.42 -34.44 -0.32 -14.91 16 17 H 0.08 2.64 8.06 -52.48 -0.42 2.21 16 18 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 19 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 20 Si 0.89 22.80 24.38 -169.99 -4.14 18.65 16 21 H -0.28 -7.09 6.87 56.52 0.39 -6.70 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 23 H -0.27 -6.68 6.53 56.52 0.37 -6.31 16 24 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 32 H 0.02 0.31 7.43 -51.93 -0.39 -0.07 16 33 H 0.35 7.81 6.71 -39.29 -0.26 7.55 16 34 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.04 1.04 3.28 -51.93 -0.17 0.87 16 36 H 0.02 0.48 7.45 -51.93 -0.39 0.09 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -33.50 305.70 -8.81 -42.30 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.38 Total: 3.29 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.44 Total: -16.35 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.03 Total: -51.21 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.65 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.50 -8.81 -42.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309347771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.768 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds