Wall clock time and date at job start Mon Mar 30 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28331 * 124.90502 * 2 1 4 4 C 1.33488 * 117.83832 * 180.02562 * 3 2 1 5 5 C 1.33869 * 113.18162 * 0.07016 * 4 3 2 6 6 S 1.70753 * 124.90112 * 180.02562 * 2 1 3 7 7 C 1.51708 * 110.89054 * 179.97438 * 5 4 3 8 8 C 1.54304 * 104.80989 * 342.76473 * 7 5 4 9 9 C 1.52615 * 137.15370 * 180.09692 * 4 3 2 10 10 H 1.09002 * 110.31988 * 78.47272 * 9 4 3 11 11 C 1.52998 * 110.40214 * 316.32248 * 9 4 3 12 12 N 1.46898 * 109.47475 * 67.87129 * 11 9 4 13 13 C 1.46899 * 111.00493 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46588 * 325.00250 * 13 12 11 15 15 C 1.53001 * 109.47035 * 84.99909 * 13 12 11 16 16 C 1.50696 * 109.47457 * 205.00292 * 13 12 11 17 17 H 1.08004 * 119.99899 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00287 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00123 * 179.97438 * 18 16 13 20 20 Si 1.86799 * 119.99878 * 359.97438 * 18 16 13 21 21 H 1.48495 * 109.47273 * 89.99699 * 20 18 16 22 22 H 1.48501 * 109.47305 * 209.99978 * 20 18 16 23 23 H 1.48507 * 109.47079 * 329.99958 * 20 18 16 24 24 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47406 * 299.98590 * 1 2 3 26 26 H 1.09000 * 109.46980 * 59.98496 * 1 2 3 27 27 H 1.09012 * 110.36856 * 223.93179 * 7 5 4 28 28 H 1.09000 * 110.37272 * 101.60108 * 7 5 4 29 29 H 1.08999 * 110.97285 * 268.08412 * 8 7 5 30 30 H 1.08996 * 110.97034 * 144.31109 * 8 7 5 31 31 H 1.09006 * 109.47319 * 187.87187 * 11 9 4 32 32 H 1.09001 * 109.47177 * 307.86972 * 11 9 4 33 33 H 1.00898 * 110.99982 * 303.95516 * 12 11 9 34 34 H 1.08998 * 109.47021 * 60.00275 * 15 13 12 35 35 H 1.08999 * 109.46981 * 180.02562 * 15 13 12 36 36 H 1.08998 * 109.47043 * 300.00225 * 15 13 12 37 37 H 0.96996 * 120.00151 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2414 1.0524 0.0000 4 6 3.5661 0.8882 -0.0005 5 6 3.9377 -0.3979 -0.0025 6 16 2.4840 -1.4004 -0.0006 7 6 5.4495 -0.5242 -0.0036 8 6 5.9609 0.8634 -0.4441 9 6 4.8042 1.7805 0.0010 10 1 4.9920 2.1656 1.0033 11 6 4.6304 2.9357 -0.9871 12 7 3.5833 3.8435 -0.4999 13 6 3.3888 4.9677 -1.4251 14 1 4.3468 5.2470 -1.8639 15 6 2.4210 4.5530 -2.5353 16 6 2.8182 6.1433 -0.6745 17 1 2.6203 6.0634 0.3843 18 6 2.5499 7.3212 -1.3390 19 7 2.0515 8.3469 -0.6839 20 14 2.8942 7.4601 -3.1697 21 1 1.6899 7.0448 -3.9328 22 1 3.2317 8.8669 -3.5046 23 1 4.0349 6.5788 -3.5271 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5136 0.8901 26 1 -0.3633 0.5141 -0.8899 27 1 5.7659 -1.2882 -0.7139 28 1 5.8112 -0.7619 0.9967 29 1 6.0965 0.9042 -1.5249 30 1 6.8848 1.1211 0.0736 31 1 5.5701 3.4805 -1.0781 32 1 4.3439 2.5402 -1.9616 33 1 2.7181 3.3478 -0.3457 34 1 1.4631 4.2737 -2.0965 35 1 2.2770 5.3871 -3.2221 36 1 2.8337 3.7028 -3.0782 37 1 1.8630 9.1756 -1.1513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309347771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:17 Heat of formation + Delta-G solvation = 27.627467 kcal Electronic energy + Delta-G solvation = -18137.084196 eV Core-core repulsion = 15426.216972 eV Total energy + Delta-G solvation = -2710.867224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.45062 -38.27304 -37.11134 -34.52196 -32.31358 -31.81899 -29.02909 -27.71981 -27.15985 -24.69374 -23.60444 -22.03868 -21.59435 -19.80730 -18.96070 -18.55233 -17.18058 -16.83706 -15.85987 -15.60988 -15.35165 -15.03493 -14.95914 -14.62605 -14.55334 -14.16259 -13.71609 -13.46002 -13.37397 -13.35214 -13.02360 -12.75448 -12.70962 -12.63998 -12.03788 -11.94908 -11.81578 -11.73584 -11.43700 -11.15987 -10.75908 -10.39161 -10.12803 -9.43645 -9.00121 -8.27925 -6.30291 -0.18913 0.31242 0.80090 1.27406 1.32652 1.43703 1.80014 2.30999 2.84991 3.05404 3.40311 3.69094 3.76282 4.09164 4.13962 4.34367 4.38986 4.47132 4.48463 4.54169 4.64056 4.66590 4.69101 4.71613 4.76169 4.84209 4.98821 5.01449 5.05568 5.14945 5.26686 5.34221 5.35713 5.65476 6.05034 6.72375 6.74497 6.80190 6.89518 7.34598 8.89938 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.005241 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.958904 B = 5341.513802 C = 5976.479173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.039 3.961 3 N -0.505 5.505 4 C 0.027 3.973 5 C -0.260 4.260 6 S 0.166 5.834 7 C -0.030 4.030 8 C -0.101 4.101 9 C -0.011 4.011 10 H 0.087 0.913 11 C 0.070 3.930 12 N -0.690 5.690 13 C 0.187 3.813 14 H 0.030 0.970 15 C -0.170 4.170 16 C -0.504 4.504 17 H 0.030 0.970 18 C 0.009 3.991 19 N -0.951 5.951 20 Si 0.954 3.046 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.250 1.250 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.017 0.983 33 H 0.343 0.657 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -24.796 -1.812 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.240 4.240 3 N -0.220 5.220 4 C -0.102 4.102 5 C -0.381 4.381 6 S 0.422 5.578 7 C -0.070 4.070 8 C -0.140 4.140 9 C -0.032 4.032 10 H 0.105 0.895 11 C -0.060 4.060 12 N -0.322 5.322 13 C 0.077 3.923 14 H 0.048 0.952 15 C -0.229 4.229 16 C -0.542 4.542 17 H 0.049 0.951 18 C -0.188 4.188 19 N -0.592 5.592 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.221 1.221 23 H -0.174 1.174 24 H 0.127 0.873 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.035 0.965 33 H 0.163 0.837 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.541 -24.871 -1.396 25.321 hybrid contribution -0.416 1.216 -1.148 1.723 sum 4.125 -23.655 -2.543 24.146 Atomic orbital electron populations 1.20583 0.83354 1.05101 1.04592 1.27368 1.02907 0.90536 1.03229 1.65277 1.05677 1.33945 1.17057 1.21868 0.89985 0.95053 1.03305 1.27504 1.03232 0.96362 1.11004 1.83219 0.95214 1.09969 1.69402 1.20770 0.83780 0.98646 1.03805 1.22439 0.96891 0.91947 1.02756 1.20791 0.89075 0.92940 1.00428 0.89488 1.21994 0.96047 0.92834 0.95108 1.60511 1.12513 1.11046 1.48087 1.19408 0.93981 0.89747 0.89136 0.95192 1.22659 1.01036 0.99431 0.99743 1.21252 1.40840 0.96439 0.95711 0.95137 1.25825 0.94655 0.95113 1.03191 1.70048 1.46516 1.04161 1.38476 0.85775 0.79631 0.76435 0.80039 1.19508 1.22088 1.17411 0.87346 0.89382 0.89593 0.88327 0.88140 0.89772 0.86915 0.90598 0.96516 0.83694 0.93582 0.94252 0.93134 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.47 71.24 0.75 -0.70 16 2 C 0.04 1.01 7.37 88.62 0.65 1.66 16 3 N -0.50 -17.05 9.24 -176.80 -1.63 -18.68 16 4 C 0.03 0.84 6.67 41.93 0.28 1.12 16 5 C -0.26 -6.23 7.42 25.01 0.19 -6.05 16 6 S 0.17 3.39 23.17 -56.49 -1.31 2.08 16 7 C -0.03 -0.50 6.80 30.61 0.21 -0.29 16 8 C -0.10 -1.84 6.63 31.43 0.21 -1.63 16 9 C -0.01 -0.32 3.13 -10.52 -0.03 -0.35 16 10 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 11 C 0.07 2.47 4.88 86.30 0.42 2.89 16 12 N -0.69 -31.43 6.23 -495.45 -3.09 -34.52 16 13 C 0.19 9.46 2.17 44.17 0.10 9.56 16 14 H 0.03 1.52 6.85 -2.39 -0.02 1.51 16 15 C -0.17 -7.79 8.64 71.98 0.62 -7.16 16 16 C -0.50 -30.94 9.42 25.60 0.24 -30.70 16 17 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 18 C 0.01 0.53 5.45 84.66 0.46 0.99 16 19 N -0.95 -61.96 13.96 21.45 0.30 -61.66 16 20 Si 0.95 46.82 24.38 68.60 1.67 48.49 16 21 H -0.27 -12.59 6.87 99.48 0.68 -11.90 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.25 -11.38 6.53 99.48 0.65 -10.73 16 24 H 0.11 1.30 8.12 -2.38 -0.02 1.28 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.55 8.05 -2.38 -0.02 2.53 16 32 H 0.02 0.59 7.43 -2.39 -0.02 0.57 16 33 H 0.34 16.02 6.71 -89.70 -0.60 15.42 16 34 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.04 1.81 3.28 -2.39 -0.01 1.80 16 36 H 0.05 2.01 7.45 -2.39 -0.02 2.00 16 37 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -75.35 305.70 0.42 -74.93 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.39 Total: 20.03 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.09 Total: -30.66 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -4.42 Total: -114.87 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.67 Total: 48.49 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.31 Total: 2.08 kcal Total: -75.35 0.42 -74.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309347771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.559 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds