Wall clock time and date at job start Mon Mar 30 2020 07:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 N 1.28669 * 124.93185 * 89.69914 * 14 13 12 16 16 C 1.32524 * 117.87695 * 179.76173 * 15 14 13 17 17 C 1.34615 * 113.15845 * 0.53225 * 16 15 14 18 18 S 1.70915 * 124.92860 * 269.99568 * 14 13 12 19 19 C 1.51000 * 125.22675 * 179.68589 * 17 16 15 20 20 C 1.53275 * 108.58170 * 343.94455 * 19 17 16 21 21 C 1.53139 * 108.99735 * 49.26979 * 20 19 17 22 22 C 1.52134 * 124.20322 * 180.26618 * 16 15 14 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 30 30 H 1.09005 * 109.61190 * 103.66857 * 19 17 16 31 31 H 1.08993 * 109.61880 * 224.20797 * 19 17 16 32 32 H 1.08998 * 109.54954 * 169.13101 * 20 19 17 33 33 H 1.09006 * 109.54658 * 289.31661 * 20 19 17 34 34 H 1.08997 * 109.47611 * 49.60877 * 21 20 19 35 35 H 1.08996 * 109.47519 * 169.62689 * 21 20 19 36 36 H 1.09000 * 109.59330 * 42.98558 * 22 16 15 37 37 H 1.09001 * 109.71540 * 282.60884 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 7 1.8438 -1.1446 -4.4013 16 6 2.4368 -1.7502 -5.4200 17 6 3.7769 -1.6230 -5.4041 18 16 4.2315 -0.6669 -3.9997 19 6 4.7196 -2.2093 -6.4277 20 6 3.9679 -3.2787 -7.2280 21 6 2.6325 -2.6989 -7.7032 22 6 1.6986 -2.5211 -6.5040 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7096 1.1617 3.4844 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 5.0641 -1.4236 -7.1002 31 1 5.5726 -2.6622 -5.9225 32 1 4.5645 -3.5752 -8.0907 33 1 3.7856 -4.1471 -6.5949 34 1 2.8040 -1.7323 -8.1767 35 1 2.1759 -3.3797 -8.4216 36 1 0.8129 -1.9643 -6.8098 37 1 1.4025 -3.4986 -6.1232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309366991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:42 Heat of formation + Delta-G solvation = 23.344009 kcal Electronic energy + Delta-G solvation = -17539.648572 eV Core-core repulsion = 14828.595603 eV Total energy + Delta-G solvation = -2711.052969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00343 -36.83783 -35.64460 -32.71465 -30.99331 -30.22458 -28.28687 -25.79304 -24.98604 -23.82182 -22.57834 -20.92011 -19.83278 -18.34911 -17.92014 -16.51366 -15.43028 -14.92300 -14.77038 -14.46286 -14.20724 -14.02882 -13.86013 -13.28467 -13.10960 -12.91477 -12.23396 -12.06331 -11.86595 -11.72283 -11.22834 -11.08855 -11.00460 -10.87972 -10.77852 -10.54812 -10.32489 -10.13575 -10.06313 -9.24718 -9.01670 -8.86384 -8.51515 -8.37772 -7.36980 -6.04660 -4.11353 0.90534 1.53068 1.96285 2.98060 3.28931 3.35718 3.40034 4.13707 4.39515 4.58687 4.65963 4.74367 5.02774 5.06505 5.26251 5.31916 5.38091 5.40978 5.49546 5.61571 5.68053 5.76116 5.80012 5.84835 6.08147 6.12189 6.14851 6.40900 6.85913 7.13692 7.19626 7.44680 7.75248 7.84965 8.05072 8.23507 8.30636 8.58079 8.97306 9.54559 11.01699 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036259 B = 0.003916 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.040792 B = 7149.327284 C = 7389.662610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.132 3.868 14 C 0.084 3.916 15 N -0.464 5.464 16 C 0.069 3.931 17 C -0.240 4.240 18 S 0.099 5.901 19 C -0.037 4.037 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.039 4.039 23 H 0.082 0.918 24 H 0.033 0.967 25 H 0.006 0.994 26 H 0.262 0.738 27 H 0.331 0.669 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -4.434 -19.057 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.001 4.001 14 C -0.196 4.196 15 N -0.178 5.178 16 C -0.063 4.063 17 C -0.361 4.361 18 S 0.356 5.644 19 C -0.077 4.077 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.079 4.079 23 H 0.100 0.900 24 H 0.052 0.948 25 H 0.025 0.975 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.275 -4.148 -18.500 19.971 hybrid contribution 0.584 -0.290 0.628 0.905 sum 6.859 -4.438 -17.872 19.651 Atomic orbital electron populations 1.21720 0.97546 0.99587 0.99469 1.19161 0.92897 0.92365 0.84987 0.97824 1.21225 1.31652 1.12628 0.90309 0.92157 1.24907 0.94963 0.94996 0.99034 1.69894 1.36464 1.22850 1.23556 0.86502 0.78461 0.80097 0.82390 1.20718 1.21153 1.19819 1.60764 1.32241 1.32609 1.05380 1.20565 1.01048 0.92281 0.86156 1.27038 0.91684 1.00708 1.00163 1.65822 1.38954 1.09869 1.03135 1.20892 0.89677 1.00025 0.95731 1.25900 0.98085 1.09480 1.02653 1.83868 1.12303 1.48539 1.19645 1.20103 0.95647 0.97683 0.94220 1.21606 0.96316 0.97955 0.99600 1.21565 0.95426 1.01552 0.97077 1.20329 0.97322 0.99061 0.91165 0.89972 0.94821 0.97521 0.92853 0.85140 0.88664 0.93859 0.90490 0.90569 0.91059 0.91312 0.91564 0.90948 0.89997 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 2 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 3 H 0.00 0.11 7.80 -51.93 -0.40 -0.29 16 4 C -0.52 -14.31 8.59 -34.44 -0.30 -14.60 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.68 -14.99 6.29 -109.22 -0.69 -15.68 16 13 C 0.13 2.52 6.06 -4.98 -0.03 2.49 16 14 C 0.08 1.47 6.90 -13.60 -0.09 1.38 16 15 N -0.46 -8.35 10.51 -7.32 -0.08 -8.42 16 16 C 0.07 1.02 6.78 -82.86 -0.56 0.46 16 17 C -0.24 -3.22 6.39 -35.44 -0.23 -3.45 16 18 S 0.10 1.43 23.17 -107.50 -2.49 -1.06 16 19 C -0.04 -0.35 6.28 -27.59 -0.17 -0.53 16 20 C -0.12 -0.94 5.95 -26.52 -0.16 -1.09 16 21 C -0.12 -0.99 5.87 -26.64 -0.16 -1.14 16 22 C -0.04 -0.44 6.29 -27.16 -0.17 -0.61 16 23 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.33 7.17 8.22 -39.29 -0.32 6.84 16 28 H 0.10 1.87 7.44 -51.93 -0.39 1.48 16 29 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -29.88 312.51 -10.31 -40.18 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.57 Total: 1.75 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.80 Total: -13.01 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.14 Total: -48.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.49 Total: -1.06 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.88 -10.31 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309366991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.527 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds