Wall clock time and date at job start Mon Mar 30 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 N 1.28669 * 124.93185 * 89.69914 * 14 13 12 16 16 C 1.32524 * 117.87695 * 179.76173 * 15 14 13 17 17 C 1.34615 * 113.15845 * 0.53225 * 16 15 14 18 18 S 1.70915 * 124.92860 * 269.99568 * 14 13 12 19 19 C 1.51000 * 125.22675 * 179.68589 * 17 16 15 20 20 C 1.53275 * 108.58170 * 343.94455 * 19 17 16 21 21 C 1.53139 * 108.99735 * 49.26979 * 20 19 17 22 22 C 1.52134 * 124.20322 * 180.26618 * 16 15 14 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 30 30 H 1.09005 * 109.61190 * 103.66857 * 19 17 16 31 31 H 1.08993 * 109.61880 * 224.20797 * 19 17 16 32 32 H 1.08998 * 109.54954 * 169.13101 * 20 19 17 33 33 H 1.09006 * 109.54658 * 289.31661 * 20 19 17 34 34 H 1.08997 * 109.47611 * 49.60877 * 21 20 19 35 35 H 1.08996 * 109.47519 * 169.62689 * 21 20 19 36 36 H 1.09000 * 109.59330 * 42.98558 * 22 16 15 37 37 H 1.09001 * 109.71540 * 282.60884 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 7 1.8438 -1.1446 -4.4013 16 6 2.4368 -1.7502 -5.4200 17 6 3.7769 -1.6230 -5.4041 18 16 4.2315 -0.6669 -3.9997 19 6 4.7196 -2.2093 -6.4277 20 6 3.9679 -3.2787 -7.2280 21 6 2.6325 -2.6989 -7.7032 22 6 1.6986 -2.5211 -6.5040 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7096 1.1617 3.4844 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 5.0641 -1.4236 -7.1002 31 1 5.5726 -2.6622 -5.9225 32 1 4.5645 -3.5752 -8.0907 33 1 3.7856 -4.1471 -6.5949 34 1 2.8040 -1.7323 -8.1767 35 1 2.1759 -3.3797 -8.4216 36 1 0.8129 -1.9643 -6.8098 37 1 1.4025 -3.4986 -6.1232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309366991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:41 Heat of formation + Delta-G solvation = 4.679803 kcal Electronic energy + Delta-G solvation = -17540.457913 eV Core-core repulsion = 14828.595603 eV Total energy + Delta-G solvation = -2711.862310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11433 -38.18400 -37.06703 -34.64355 -31.83369 -31.78676 -29.72930 -27.57057 -26.81040 -24.77635 -23.65295 -22.02086 -21.76067 -19.42112 -19.12604 -18.39729 -17.00084 -16.30133 -16.13545 -15.72146 -15.56667 -15.39360 -14.78318 -14.59168 -14.44497 -14.19561 -13.67638 -13.54886 -13.13701 -12.85933 -12.80889 -12.74089 -12.63957 -12.31481 -12.22052 -12.00960 -11.76130 -11.67806 -11.37991 -10.95544 -10.59928 -10.48580 -10.15775 -9.54717 -9.17402 -8.15353 -6.29910 -0.28281 0.37593 0.78654 1.41897 1.43483 1.54124 1.77860 2.40832 2.99584 3.13514 3.63656 3.80391 3.88908 3.99259 4.06597 4.21911 4.29101 4.53541 4.58364 4.59682 4.67464 4.80600 4.86103 4.99843 5.05073 5.08799 5.15187 5.15420 5.23510 5.39809 5.41654 5.44426 5.62714 5.79151 6.16988 6.35182 6.64115 6.86185 6.90453 7.40210 8.90587 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036259 B = 0.003916 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.040792 B = 7149.327284 C = 7389.662610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.218 3.782 3 H -0.020 1.020 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.139 3.861 14 C 0.046 3.954 15 N -0.491 5.491 16 C 0.039 3.961 17 C -0.224 4.224 18 S 0.128 5.872 19 C -0.041 4.041 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.040 4.040 23 H 0.062 0.938 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.264 0.736 27 H 0.333 0.667 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -5.756 -20.627 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 H -0.002 1.002 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.312 5.312 13 C 0.007 3.993 14 C -0.233 4.233 15 N -0.206 5.206 16 C -0.092 4.092 17 C -0.345 4.345 18 S 0.385 5.615 19 C -0.080 4.080 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.080 4.080 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.919 -5.468 -20.084 22.271 hybrid contribution 0.111 0.119 1.005 1.018 sum 8.030 -5.350 -19.079 21.380 Atomic orbital electron populations 1.21554 0.97673 0.98795 0.99162 1.18961 0.92788 0.91190 0.86107 1.00202 1.21521 1.32025 1.12844 0.91458 0.92329 1.25718 0.95023 0.95653 1.01983 1.70013 1.37186 1.23958 1.24341 0.85460 0.78109 0.78941 0.78535 1.19826 1.20753 1.19449 1.60629 1.32420 1.33109 1.04992 1.20388 1.00806 0.92213 0.85938 1.26596 0.93666 1.02607 1.00399 1.65802 1.40603 1.10140 1.04015 1.21450 0.90732 1.00902 0.96089 1.26536 0.98385 1.07396 1.02224 1.83657 1.09581 1.48254 1.19966 1.20380 0.95294 0.98669 0.93703 1.21640 0.96264 0.96973 1.00287 1.21573 0.95084 1.02387 0.95975 1.20481 0.97792 0.98319 0.91377 0.91976 0.95658 0.96050 0.92674 0.84953 0.89936 0.93134 0.88592 0.89366 0.88105 0.91902 0.91318 0.88593 0.90367 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.91 9.19 71.98 0.66 -5.25 16 2 C 0.22 11.41 2.60 44.17 0.11 11.52 16 3 H -0.02 -1.10 7.80 -2.39 -0.02 -1.12 16 4 C -0.54 -30.16 8.59 25.60 0.22 -29.94 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 8 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 N -0.68 -30.79 6.29 -499.47 -3.14 -33.94 16 13 C 0.14 5.45 6.06 85.56 0.52 5.97 16 14 C 0.05 1.62 6.90 88.57 0.61 2.24 16 15 N -0.49 -17.80 10.51 -177.08 -1.86 -19.66 16 16 C 0.04 1.14 6.78 42.08 0.29 1.42 16 17 C -0.22 -5.59 6.39 24.95 0.16 -5.44 16 18 S 0.13 3.59 23.17 -56.49 -1.31 2.28 16 19 C -0.04 -0.64 6.28 30.04 0.19 -0.46 16 20 C -0.11 -1.40 5.95 30.73 0.18 -1.22 16 21 C -0.11 -1.53 5.87 30.65 0.18 -1.35 16 22 C -0.04 -0.85 6.29 30.32 0.19 -0.66 16 23 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 24 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.02 0.99 7.45 -2.38 -0.02 0.97 16 26 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.33 14.69 8.22 -89.70 -0.74 13.95 16 28 H 0.08 3.37 7.44 -2.38 -0.02 3.35 16 29 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 30 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.88 8.11 -2.38 -0.02 0.86 16 34 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -64.76 312.51 0.05 -64.71 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.33 Total: 15.42 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.76 Total: -21.81 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -4.76 Total: -106.28 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.31 Total: 2.28 kcal Total: -64.76 0.05 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309366991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.391 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds