Wall clock time and date at job start Mon Mar 30 2020 07:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 115.56449 * 2 1 4 4 C 1.53001 * 117.49897 * 145.68713 * 2 1 3 5 5 C 1.53003 * 117.49595 * 214.30901 * 2 1 3 6 6 H 1.09003 * 117.51937 * 145.02759 * 5 2 1 7 7 C 1.50703 * 117.50037 * 0.02562 * 5 2 1 8 8 N 1.29025 * 124.91420 * 300.01226 * 7 5 2 9 9 C 1.31782 * 117.12556 * 180.02562 * 8 7 5 10 10 C 1.33634 * 114.49788 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.03838 * 180.02562 * 10 9 8 12 12 N 1.46906 * 109.47010 * 90.02535 * 11 10 9 13 13 C 1.46901 * 110.99793 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99751 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47116 * 59.99536 * 19 17 15 21 21 H 1.48500 * 109.46585 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46730 * 299.99515 * 19 17 15 23 23 S 1.70971 * 124.91699 * 120.32468 * 7 5 2 24 24 H 1.08998 * 109.47032 * 205.69221 * 1 2 3 25 25 H 1.09001 * 109.46867 * 325.68710 * 1 2 3 26 26 H 1.08997 * 109.47258 * 85.68734 * 1 2 3 27 27 H 1.09004 * 117.49934 * 0.02562 * 4 2 1 28 28 H 1.08993 * 117.49938 * 214.97408 * 4 2 1 29 29 H 1.07998 * 122.74917 * 180.02562 * 9 8 7 30 30 H 1.09006 * 109.47061 * 330.03207 * 11 10 9 31 31 H 1.08995 * 109.47155 * 210.02444 * 11 10 9 32 32 H 1.00898 * 110.99995 * 56.04971 * 12 11 10 33 33 H 1.09001 * 109.46874 * 60.00179 * 13 12 11 34 34 H 1.08992 * 109.47407 * 300.00197 * 13 12 11 35 35 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 36 36 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 37 37 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2364 -1.1211 -0.7650 6 1 3.1716 -0.8757 -1.2684 7 6 1.3719 -2.1404 -1.4613 8 7 0.5145 -2.9056 -0.8748 9 6 -0.1609 -3.7442 -1.6346 10 6 0.1435 -3.6826 -2.9343 11 6 -0.4677 -4.5191 -4.0287 12 7 -1.6481 -3.8316 -4.5693 13 6 -2.2719 -4.6200 -5.6405 14 6 -3.4952 -3.8737 -6.1767 15 6 -4.1354 -4.6827 -7.2752 16 1 -3.7124 -5.6341 -7.5619 17 6 -5.2613 -4.2082 -7.9142 18 7 -5.7768 -3.0498 -7.5647 19 14 -6.0553 -5.2113 -9.2754 20 1 -6.4769 -6.5295 -8.7373 21 1 -7.2426 -4.4868 -9.7958 22 1 -5.0779 -5.4149 -10.3746 23 16 1.3908 -2.4555 -3.1416 24 1 -0.3633 -0.9261 0.4455 25 1 -0.3633 0.8488 0.5793 26 1 -0.3633 0.0773 -1.0247 27 1 1.6112 -1.8587 1.2680 28 1 3.1715 -0.8752 1.2682 29 1 -0.9004 -4.4249 -1.2393 30 1 -0.7646 -5.4866 -3.6237 31 1 0.2627 -4.6667 -4.8242 32 1 -1.4109 -2.9058 -4.8925 33 1 -2.5812 -5.5880 -5.2462 34 1 -1.5542 -4.7687 -6.4472 35 1 -4.2128 -3.7253 -5.3697 36 1 -3.1863 -2.9055 -6.5708 37 1 -6.5686 -2.7158 -8.0145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309384654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:13 Heat of formation + Delta-G solvation = 54.679204 kcal Electronic energy + Delta-G solvation = -16914.231857 eV Core-core repulsion = 14204.537684 eV Total energy + Delta-G solvation = -2709.694173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00606 -37.72408 -36.07471 -33.15244 -31.24227 -29.18503 -28.45139 -26.44250 -24.52278 -23.09642 -22.20568 -20.93540 -20.63477 -18.68293 -18.00605 -16.34705 -16.10475 -15.63703 -14.74700 -14.63635 -14.47229 -14.19305 -13.74520 -13.58389 -13.14009 -12.71760 -12.49494 -12.27758 -12.16481 -11.86802 -11.64828 -11.28960 -11.01888 -10.93388 -10.71496 -10.57187 -10.29171 -10.05326 -9.61436 -9.48448 -9.28315 -9.14831 -8.63749 -8.36891 -7.92750 -6.01143 -4.04307 0.68581 1.29318 1.75971 2.78551 3.32504 3.36989 3.39168 3.60324 4.00333 4.42358 4.47790 4.57077 4.70052 4.78486 5.01100 5.12542 5.23594 5.27727 5.34670 5.50554 5.57619 5.69029 5.72074 5.82482 5.88345 5.93034 6.16602 6.25367 6.28284 6.32122 6.91505 7.36118 7.67132 7.74605 7.75419 7.87574 8.04694 8.40216 9.02621 9.59561 11.10214 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.003112 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.870608 B = 8994.266884 C = 9322.551609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 H 0.111 0.889 4 C -0.148 4.148 5 C -0.095 4.095 6 H 0.123 0.877 7 C 0.074 3.926 8 N -0.470 5.470 9 C 0.049 3.951 10 C -0.206 4.206 11 C 0.134 3.866 12 N -0.685 5.685 13 C 0.065 3.935 14 C 0.026 3.974 15 C -0.524 4.524 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 S 0.116 5.884 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.176 0.824 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.337 0.663 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.026 0.974 36 H 0.014 0.986 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.744 4.047 14.190 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 H 0.129 0.871 4 C -0.187 4.187 5 C -0.117 4.117 6 H 0.141 0.859 7 C -0.203 4.203 8 N -0.184 5.184 9 C -0.102 4.102 10 C -0.328 4.328 11 C 0.002 3.998 12 N -0.317 5.317 13 C -0.063 4.063 14 C -0.011 4.011 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 S 0.372 5.628 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.193 0.807 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.155 0.845 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.657 4.335 14.321 23.144 hybrid contribution -0.491 -0.962 -1.272 1.669 sum 17.166 3.373 13.049 21.825 Atomic orbital electron populations 1.21387 0.92136 1.02656 1.02124 1.22453 0.96215 0.93676 1.02442 0.87144 1.23171 1.02655 1.01367 0.91509 1.20607 0.98848 0.97595 0.94651 0.85886 1.25812 1.00032 1.00508 0.93968 1.66176 1.07395 1.06264 1.38595 1.21643 1.00437 0.99270 0.88803 1.25994 1.02980 1.04103 0.99685 1.20291 0.91358 0.95745 0.92386 1.60684 1.26203 1.05999 1.38778 1.22212 0.97149 0.97346 0.89545 1.19061 0.91233 0.95157 0.95691 1.21125 1.11282 1.05312 1.18541 0.92758 1.25005 0.96987 0.95069 0.97266 1.69962 1.22420 1.18878 1.41925 0.86634 0.78790 0.80233 0.82201 1.20192 1.21241 1.20277 1.83930 1.36249 1.33673 1.08964 0.91199 0.92177 0.92437 0.87356 0.88330 0.80700 0.89114 0.94516 0.84522 0.92029 0.96426 0.95571 0.96800 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.12 37.16 0.34 -0.94 16 2 C -0.13 -1.10 6.41 -90.62 -0.58 -1.68 16 3 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.23 9.77 -26.73 -0.26 -1.50 16 5 C -0.10 -0.89 6.28 -91.77 -0.58 -1.47 16 6 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.07 0.89 6.13 -13.46 -0.08 0.81 16 8 N -0.47 -6.32 9.08 -11.87 -0.11 -6.42 16 9 C 0.05 0.67 11.25 -19.19 -0.22 0.46 16 10 C -0.21 -2.80 6.11 -35.92 -0.22 -3.02 16 11 C 0.13 1.93 6.22 -4.97 -0.03 1.89 16 12 N -0.69 -12.22 6.49 -115.05 -0.75 -12.97 16 13 C 0.07 1.36 5.62 -3.82 -0.02 1.34 16 14 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 S 0.12 1.39 23.18 -107.50 -2.49 -1.11 16 24 H 0.07 0.81 7.15 -51.93 -0.37 0.44 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 1.06 7.75 -51.93 -0.40 0.66 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.34 5.99 8.72 -39.29 -0.34 5.65 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -30.59 326.89 -10.64 -41.23 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.73 Total: 1.14 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.21 Total: -17.17 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.12 Total: -45.67 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.59 -10.64 -41.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309384654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.909 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds