Wall clock time and date at job start Mon Mar 30 2020 07:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 115.56449 * 2 1 4 4 C 1.53001 * 117.49897 * 145.68713 * 2 1 3 5 5 C 1.53003 * 117.49595 * 214.30901 * 2 1 3 6 6 H 1.09003 * 117.51937 * 145.02759 * 5 2 1 7 7 C 1.50703 * 117.50037 * 0.02562 * 5 2 1 8 8 N 1.29025 * 124.91420 * 300.01226 * 7 5 2 9 9 C 1.31782 * 117.12556 * 180.02562 * 8 7 5 10 10 C 1.33634 * 114.49788 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.03838 * 180.02562 * 10 9 8 12 12 N 1.46906 * 109.47010 * 90.02535 * 11 10 9 13 13 C 1.46901 * 110.99793 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99751 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47116 * 59.99536 * 19 17 15 21 21 H 1.48500 * 109.46585 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46730 * 299.99515 * 19 17 15 23 23 S 1.70971 * 124.91699 * 120.32468 * 7 5 2 24 24 H 1.08998 * 109.47032 * 205.69221 * 1 2 3 25 25 H 1.09001 * 109.46867 * 325.68710 * 1 2 3 26 26 H 1.08997 * 109.47258 * 85.68734 * 1 2 3 27 27 H 1.09004 * 117.49934 * 0.02562 * 4 2 1 28 28 H 1.08993 * 117.49938 * 214.97408 * 4 2 1 29 29 H 1.07998 * 122.74917 * 180.02562 * 9 8 7 30 30 H 1.09006 * 109.47061 * 330.03207 * 11 10 9 31 31 H 1.08995 * 109.47155 * 210.02444 * 11 10 9 32 32 H 1.00898 * 110.99995 * 56.04971 * 12 11 10 33 33 H 1.09001 * 109.46874 * 60.00179 * 13 12 11 34 34 H 1.08992 * 109.47407 * 300.00197 * 13 12 11 35 35 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 36 36 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 37 37 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2364 -1.1211 -0.7650 6 1 3.1716 -0.8757 -1.2684 7 6 1.3719 -2.1404 -1.4613 8 7 0.5145 -2.9056 -0.8748 9 6 -0.1609 -3.7442 -1.6346 10 6 0.1435 -3.6826 -2.9343 11 6 -0.4677 -4.5191 -4.0287 12 7 -1.6481 -3.8316 -4.5693 13 6 -2.2719 -4.6200 -5.6405 14 6 -3.4952 -3.8737 -6.1767 15 6 -4.1354 -4.6827 -7.2752 16 1 -3.7124 -5.6341 -7.5619 17 6 -5.2613 -4.2082 -7.9142 18 7 -5.7768 -3.0498 -7.5647 19 14 -6.0553 -5.2113 -9.2754 20 1 -6.4769 -6.5295 -8.7373 21 1 -7.2426 -4.4868 -9.7958 22 1 -5.0779 -5.4149 -10.3746 23 16 1.3908 -2.4555 -3.1416 24 1 -0.3633 -0.9261 0.4455 25 1 -0.3633 0.8488 0.5793 26 1 -0.3633 0.0773 -1.0247 27 1 1.6112 -1.8587 1.2680 28 1 3.1715 -0.8752 1.2682 29 1 -0.9004 -4.4249 -1.2393 30 1 -0.7646 -5.4866 -3.6237 31 1 0.2627 -4.6667 -4.8242 32 1 -1.4109 -2.9058 -4.8925 33 1 -2.5812 -5.5880 -5.2462 34 1 -1.5542 -4.7687 -6.4472 35 1 -4.2128 -3.7253 -5.3697 36 1 -3.1863 -2.9055 -6.5708 37 1 -6.5686 -2.7158 -8.0145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309384654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:13 Heat of formation + Delta-G solvation = 36.113932 kcal Electronic energy + Delta-G solvation = -16915.036907 eV Core-core repulsion = 14204.537684 eV Total energy + Delta-G solvation = -2710.499223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95187 -38.55614 -37.52166 -35.15606 -32.76313 -30.54018 -29.50690 -27.63123 -26.10524 -24.46161 -23.12738 -22.49727 -21.65401 -19.67952 -18.94078 -18.51363 -17.07027 -16.74311 -16.43622 -15.92602 -15.84846 -15.18616 -14.96438 -14.84806 -14.30672 -14.09581 -13.99264 -13.45642 -13.27344 -13.07920 -12.84908 -12.78021 -12.47156 -12.34642 -12.25433 -11.92201 -11.54627 -11.41246 -11.28212 -11.03015 -10.57843 -10.54395 -10.24452 -9.62795 -9.35819 -8.21037 -6.33060 -0.30318 0.33184 0.77021 1.40314 1.43688 1.51607 1.79029 2.40210 2.87648 3.12456 3.14602 3.39715 3.77631 3.83981 3.86496 4.01040 4.13461 4.38302 4.47843 4.48285 4.55816 4.63110 4.78409 4.85633 4.86794 4.94737 5.04067 5.09235 5.21460 5.22739 5.42111 5.46609 5.63716 5.75118 6.06416 6.20000 6.39061 6.76973 6.84208 7.36480 8.91010 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.003112 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.870608 B = 8994.266884 C = 9322.551609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 H 0.137 0.863 4 C -0.139 4.139 5 C -0.110 4.110 6 H 0.147 0.853 7 C 0.076 3.924 8 N -0.491 5.491 9 C 0.044 3.956 10 C -0.227 4.227 11 C 0.140 3.860 12 N -0.693 5.693 13 C 0.084 3.916 14 C 0.032 3.968 15 C -0.546 4.546 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.265 1.265 23 S 0.136 5.864 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.126 0.874 29 H 0.180 0.820 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.336 0.664 33 H 0.065 0.935 34 H 0.025 0.975 35 H -0.007 1.007 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.283 3.812 14.184 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 H 0.155 0.845 4 C -0.178 4.178 5 C -0.132 4.132 6 H 0.165 0.835 7 C -0.201 4.201 8 N -0.205 5.205 9 C -0.107 4.107 10 C -0.348 4.348 11 C 0.009 3.991 12 N -0.324 5.324 13 C -0.045 4.045 14 C -0.006 4.006 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.190 1.190 23 S 0.393 5.607 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.144 0.856 29 H 0.197 0.803 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.011 0.989 36 H 0.008 0.992 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.220 4.089 14.319 24.314 hybrid contribution -0.934 -0.813 -1.177 1.708 sum 18.286 3.276 13.142 22.756 Atomic orbital electron populations 1.21361 0.93719 1.02297 1.00947 1.22552 0.95033 0.94813 1.02022 0.84504 1.23212 1.03410 1.00500 0.90664 1.20913 0.99446 0.97391 0.95447 0.83537 1.26392 0.99355 1.00115 0.94222 1.66235 1.08297 1.07019 1.38930 1.21829 1.00479 0.99362 0.89060 1.25893 1.04300 1.05256 0.99381 1.20252 0.90216 0.95871 0.92771 1.60576 1.28394 1.05924 1.37524 1.21821 0.95305 0.96813 0.90511 1.18914 0.92715 0.94602 0.94343 1.21593 1.11794 1.05887 1.19154 0.91847 1.26002 0.97642 0.96197 0.99986 1.70107 1.23000 1.20743 1.43415 0.85459 0.77797 0.78649 0.78889 1.19090 1.20895 1.19020 1.83795 1.35308 1.32767 1.08860 0.93126 0.90700 0.94292 0.89168 0.85572 0.80312 0.88293 0.93436 0.84658 0.91612 0.95703 0.98858 0.99201 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.12 71.98 0.66 -1.82 16 2 C -0.12 -1.86 6.41 -10.79 -0.07 -1.93 16 3 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.14 -2.01 9.77 30.60 0.30 -1.71 16 5 C -0.11 -1.84 6.28 -11.54 -0.07 -1.91 16 6 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 7 C 0.08 1.75 6.13 88.52 0.54 2.30 16 8 N -0.49 -13.06 9.08 -191.45 -1.74 -14.80 16 9 C 0.04 1.20 11.25 83.66 0.94 2.14 16 10 C -0.23 -6.05 6.11 24.64 0.15 -5.90 16 11 C 0.14 3.92 6.22 85.56 0.53 4.45 16 12 N -0.69 -24.76 6.49 -517.92 -3.36 -28.12 16 13 C 0.08 3.49 5.62 86.30 0.49 3.97 16 14 C 0.03 1.71 5.23 29.85 0.16 1.86 16 15 C -0.55 -31.22 9.11 25.60 0.23 -30.98 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 18 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 19 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 S 0.14 3.12 23.18 -56.49 -1.31 1.81 16 24 H 0.05 1.18 7.15 -2.39 -0.02 1.16 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 1.68 7.75 -2.38 -0.02 1.66 16 28 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.34 12.08 8.72 -89.70 -0.78 11.30 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -66.32 326.89 0.49 -65.83 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.27 Total: 15.27 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 4.32 Total: -29.09 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -4.81 Total: -100.12 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -66.32 0.49 -65.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309384654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.945 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds