Wall clock time and date at job start Mon Mar 30 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55018 * 2 1 4 4 C 1.52998 * 117.50034 * 214.32434 * 2 1 3 5 5 C 1.53001 * 60.00347 * 252.51286 * 4 2 1 6 6 H 1.08996 * 117.50157 * 107.48798 * 5 4 2 7 7 C 1.50702 * 117.49877 * 252.51183 * 5 4 2 8 8 N 1.29026 * 124.91711 * 8.31599 * 7 5 4 9 9 C 1.31779 * 117.12620 * 179.81220 * 8 7 5 10 10 C 1.33636 * 114.49783 * 0.47466 * 9 8 7 11 11 C 1.50703 * 126.03640 * 179.78555 * 10 9 8 12 12 N 1.46898 * 109.46815 * 89.95855 * 11 10 9 13 13 C 1.46904 * 110.99864 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47029 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47056 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00043 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00106 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99504 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00235 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47180 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47304 * 119.99660 * 19 17 15 22 22 H 1.48496 * 109.47576 * 239.99972 * 19 17 15 23 23 S 1.70972 * 124.91747 * 188.62121 * 7 5 4 24 24 H 1.09002 * 109.47153 * 154.28028 * 1 2 3 25 25 H 1.09001 * 109.46832 * 34.28219 * 1 2 3 26 26 H 1.09004 * 109.47261 * 274.28200 * 1 2 3 27 27 H 1.08998 * 117.50041 * 0.02562 * 4 2 1 28 28 H 1.09003 * 117.49853 * 144.99608 * 4 2 1 29 29 H 1.08006 * 122.75048 * 180.22146 * 9 8 7 30 30 H 1.09004 * 109.47201 * 209.95885 * 11 10 9 31 31 H 1.08998 * 109.47175 * 329.96224 * 11 10 9 32 32 H 1.00901 * 111.00694 * 303.95197 * 12 11 10 33 33 H 1.09005 * 109.47270 * 299.99745 * 13 12 11 34 34 H 1.08992 * 109.47186 * 60.00544 * 13 12 11 35 35 H 1.09005 * 109.46608 * 299.99809 * 14 13 12 36 36 H 1.08994 * 109.47593 * 59.99652 * 14 13 12 37 37 H 0.97004 * 119.99513 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7652 5 6 2.2364 -1.1212 0.7648 6 1 1.6112 -1.8588 1.2678 7 6 3.5292 -0.7815 1.4607 8 7 4.5914 -0.3439 0.8733 9 6 5.6378 -0.0918 1.6335 10 6 5.4510 -0.3395 2.9334 11 6 6.4696 -0.1489 4.0275 12 7 6.3601 1.2132 4.5666 13 6 7.3398 1.4355 5.6385 14 6 7.1950 2.8614 6.1741 15 6 8.2004 3.0896 7.2732 16 1 8.8749 2.2969 7.5612 17 6 8.2592 4.3106 7.9111 18 7 7.4381 5.2761 7.5600 19 14 9.5050 4.5933 9.2739 20 1 10.3057 3.3592 9.4765 21 1 10.4066 5.7113 8.8964 22 1 8.7936 4.9344 10.5320 23 16 3.8032 -0.9273 3.1420 24 1 -0.3633 -0.9259 -0.4460 25 1 -0.3633 0.8492 -0.5789 26 1 -0.3634 0.0767 1.0248 27 1 1.6113 -1.8579 -1.2691 28 1 3.1713 -0.8747 -1.2688 29 1 6.5713 0.2805 1.2379 30 1 6.2870 -0.8706 4.8237 31 1 7.4703 -0.3000 3.6227 32 1 6.4616 1.9009 3.8353 33 1 7.1627 0.7248 6.4458 34 1 8.3466 1.2953 5.2453 35 1 7.3718 3.5723 5.3669 36 1 6.1881 3.0013 6.5674 37 1 7.4798 6.1352 8.0085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309384660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:17 Heat of formation + Delta-G solvation = 52.037223 kcal Electronic energy + Delta-G solvation = -16682.429944 eV Core-core repulsion = 13972.621206 eV Total energy + Delta-G solvation = -2709.808738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93840 -37.77718 -36.08936 -33.17014 -31.35251 -29.49371 -28.25130 -26.30152 -24.52966 -23.17919 -22.14330 -20.97763 -20.63808 -18.72131 -18.24639 -16.35278 -16.02257 -15.35421 -14.79947 -14.57796 -14.51866 -14.41958 -13.70322 -13.51622 -13.31033 -12.88821 -12.59664 -12.24373 -12.07532 -11.99527 -11.67059 -11.29904 -11.01780 -10.96261 -10.75692 -10.54152 -10.39887 -10.05135 -9.58925 -9.48832 -9.23958 -9.11204 -8.65835 -8.37638 -7.92403 -6.01675 -4.04576 0.68728 1.33296 1.82043 2.75320 3.30070 3.37459 3.41292 3.58997 3.98950 4.42093 4.50872 4.58802 4.62355 4.75779 5.02592 5.04387 5.23189 5.25336 5.34407 5.40337 5.47550 5.53974 5.64968 5.76109 5.81449 5.88393 6.04161 6.18919 6.25668 6.32613 6.91505 7.36127 7.67685 7.73835 7.75456 7.88100 8.04521 8.40089 9.02790 9.59417 11.09765 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038265 B = 0.002947 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.571714 B = 9499.154464 C = 9837.874754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.130 4.130 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.091 4.091 6 H 0.124 0.876 7 C 0.060 3.940 8 N -0.474 5.474 9 C 0.033 3.967 10 C -0.205 4.205 11 C 0.132 3.868 12 N -0.687 5.687 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 S 0.151 5.849 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.172 0.828 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.340 0.660 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.026 0.974 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 -14.351 -15.009 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 H 0.127 0.873 4 C -0.186 4.186 5 C -0.113 4.113 6 H 0.142 0.858 7 C -0.217 4.217 8 N -0.188 5.188 9 C -0.119 4.119 10 C -0.327 4.327 11 C 0.001 3.999 12 N -0.319 5.319 13 C -0.062 4.062 14 C -0.012 4.012 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 S 0.408 5.592 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.189 0.811 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.413 -14.605 -14.208 23.859 hybrid contribution 2.422 0.719 -0.015 2.527 sum -9.990 -13.886 -14.223 22.246 Atomic orbital electron populations 1.21413 0.92242 1.02206 1.02266 1.22475 0.95159 0.94833 1.02588 0.87347 1.23151 1.03080 1.00740 0.91603 1.20578 0.92633 1.03500 0.94577 0.85800 1.25947 0.97524 1.03510 0.94675 1.66134 0.99095 1.14809 1.38778 1.21624 0.98371 1.03008 0.88902 1.26012 0.98713 1.08896 0.99040 1.20271 0.93079 0.93718 0.92874 1.60668 1.55117 1.01485 1.14602 1.22206 0.90546 1.01637 0.91820 1.19074 0.97802 0.88680 0.95667 1.21198 1.18272 0.98086 1.18516 0.92658 1.25013 0.95980 0.96156 0.97266 1.69989 1.37398 1.03830 1.41951 0.86519 0.81281 0.78139 0.81950 1.19765 1.21017 1.20946 1.83949 1.07929 1.59906 1.07465 0.92334 0.91706 0.91867 0.88249 0.87501 0.81089 0.90088 0.93401 0.84274 0.92136 0.96341 0.96757 0.95595 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.19 37.16 0.38 -0.45 16 2 C -0.13 -1.15 6.11 -90.62 -0.55 -1.70 16 3 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.15 -1.25 9.76 -26.73 -0.26 -1.51 16 5 C -0.09 -0.88 6.01 -91.77 -0.55 -1.43 16 6 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 7 C 0.06 0.75 6.96 -13.46 -0.09 0.65 16 8 N -0.47 -6.56 10.02 -11.86 -0.12 -6.68 16 9 C 0.03 0.44 11.25 -19.19 -0.22 0.23 16 10 C -0.20 -2.81 6.11 -35.92 -0.22 -3.03 16 11 C 0.13 1.91 6.22 -4.98 -0.03 1.88 16 12 N -0.69 -12.25 6.49 -115.05 -0.75 -13.00 16 13 C 0.07 1.36 5.62 -3.82 -0.02 1.34 16 14 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 S 0.15 1.89 23.18 -107.50 -2.49 -0.60 16 24 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.64 8.05 -51.93 -0.42 0.23 16 28 H 0.11 1.06 7.84 -51.93 -0.41 0.65 16 29 H 0.17 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.34 5.96 8.72 -39.29 -0.34 5.62 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -30.96 329.91 -10.57 -41.52 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.77 Total: 0.48 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.13 Total: -17.08 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.13 Total: -45.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.96 -10.57 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309384660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.558 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds