Wall clock time and date at job start Mon Mar 30 2020 07:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47112 * 2 1 4 4 N 1.46899 * 109.46670 * 120.00181 * 2 1 3 5 5 C 1.46902 * 110.99893 * 271.50689 * 4 2 1 6 6 H 1.08992 * 109.47460 * 344.93124 * 5 4 2 7 7 C 1.53003 * 109.46854 * 104.92949 * 5 4 2 8 8 C 1.50698 * 109.47172 * 224.92357 * 5 4 2 9 9 H 1.07991 * 120.00179 * 354.73196 * 8 5 4 10 10 C 1.37882 * 119.99565 * 174.72783 * 8 5 4 11 11 N 1.31514 * 119.99595 * 164.62181 * 10 8 5 12 12 Si 1.86793 * 120.00296 * 344.62031 * 10 8 5 13 13 H 1.48506 * 109.47168 * 269.99689 * 12 10 8 14 14 H 1.48503 * 109.47494 * 29.99755 * 12 10 8 15 15 H 1.48501 * 109.47547 * 150.00068 * 12 10 8 16 16 C 1.50695 * 109.46684 * 239.99970 * 2 1 3 17 17 C 1.33649 * 122.74898 * 234.70981 * 16 2 1 18 18 S 1.76200 * 107.92335 * 179.97438 * 17 16 2 19 19 C 1.70979 * 90.28424 * 0.27488 * 18 17 16 20 20 C 1.50693 * 124.91535 * 179.84130 * 19 18 17 21 21 C 1.53001 * 117.50018 * 8.62233 * 20 19 18 22 22 C 1.52997 * 59.99929 * 252.50854 * 21 20 19 23 23 N 1.29028 * 110.16584 * 359.83972 * 19 18 17 24 24 H 1.08997 * 109.47471 * 182.46639 * 1 2 3 25 25 H 1.09008 * 109.46870 * 302.46544 * 1 2 3 26 26 H 1.09001 * 109.46866 * 62.45860 * 1 2 3 27 27 H 1.00896 * 111.00605 * 35.46922 * 4 2 1 28 28 H 1.08991 * 109.47343 * 174.92305 * 7 5 4 29 29 H 1.09008 * 109.47027 * 294.92041 * 7 5 4 30 30 H 1.09007 * 109.47097 * 54.91581 * 7 5 4 31 31 H 0.97002 * 120.00385 * 354.90186 * 11 10 8 32 32 H 1.08002 * 126.03539 * 0.03714 * 17 16 2 33 33 H 1.09003 * 115.55251 * 154.32998 * 20 19 18 34 34 H 1.08996 * 117.49574 * 359.97438 * 21 20 19 35 35 H 1.09003 * 117.50015 * 145.02015 * 21 20 19 36 36 H 1.08997 * 117.50352 * 252.51090 * 22 21 20 37 37 H 1.08998 * 117.52070 * 107.47927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1610 0.2405 2.3252 6 1 2.1303 1.2649 1.9542 7 6 1.0153 0.0222 3.3155 8 6 3.4769 -0.0037 3.0178 9 1 4.1030 -0.8289 2.7123 10 6 3.8816 0.8266 4.0416 11 7 4.8573 0.4562 4.8418 12 14 3.0441 2.4774 4.2918 13 1 3.7526 3.5167 3.5024 14 1 1.6321 2.3897 3.8403 15 1 3.0817 2.8384 5.7318 16 6 2.0322 -0.7104 -1.2304 17 6 2.8854 -1.7376 -1.1746 18 16 3.2069 -2.2658 -2.8246 19 6 2.1685 -1.0478 -3.4258 20 6 1.8766 -0.8059 -4.8843 21 6 2.3949 -1.8369 -5.8890 22 6 3.0577 -0.4613 -5.7936 23 7 1.6711 -0.3657 -2.4501 24 1 -0.3634 -1.0267 0.0442 25 1 -0.3633 0.5517 0.8671 26 1 -0.3633 0.4752 -0.9112 27 1 1.4169 -1.4642 1.4429 28 1 1.1689 0.6502 4.1930 29 1 0.0699 0.2857 2.8412 30 1 0.9908 -1.0248 3.6177 31 1 5.2424 -0.4303 4.7592 32 1 3.3032 -2.1685 -0.2767 33 1 0.9200 -0.3297 -5.0996 34 1 2.9475 -2.6898 -5.4950 35 1 1.7793 -2.0392 -6.7655 36 1 2.8782 0.2415 -6.6072 37 1 4.0460 -0.4090 -5.3368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309728089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:51 Heat of formation + Delta-G solvation = 70.441494 kcal Electronic energy + Delta-G solvation = -17770.256427 eV Core-core repulsion = 15061.245759 eV Total energy + Delta-G solvation = -2709.010669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86873 -37.57843 -36.42437 -33.10939 -31.08793 -29.28077 -27.55664 -25.52411 -24.60780 -23.14057 -22.70920 -20.84865 -20.11228 -19.28602 -17.64880 -17.07223 -16.09697 -15.33056 -14.79175 -14.42882 -14.17458 -13.72457 -13.57974 -13.27494 -12.71701 -12.49835 -12.34828 -12.06784 -11.85830 -11.81666 -11.43914 -11.17124 -11.08011 -10.85752 -10.81608 -10.70686 -10.37889 -10.06796 -9.56998 -9.47075 -9.13727 -8.89636 -8.37698 -8.28107 -7.53326 -6.35852 -3.97540 0.94173 1.54081 1.95950 2.97608 3.41278 3.44076 3.57880 3.61358 3.89883 4.52723 4.53068 4.67639 4.72605 5.09918 5.27144 5.30415 5.32347 5.49391 5.55178 5.61060 5.70657 5.76855 5.81505 5.97020 6.10363 6.18356 6.26078 6.36302 6.48294 6.55174 6.58285 6.82316 7.14990 7.80774 7.98960 8.25630 8.31470 8.50359 9.07060 9.69456 11.00762 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031766 B = 0.004448 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.238612 B = 6293.022641 C = 6509.749459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.158 3.842 3 H 0.090 0.910 4 N -0.670 5.670 5 C 0.191 3.809 6 H 0.022 0.978 7 C -0.171 4.171 8 C -0.577 4.577 9 H 0.063 0.937 10 C 0.027 3.973 11 N -0.912 5.912 12 Si 1.040 2.960 13 H -0.287 1.287 14 H -0.274 1.274 15 H -0.287 1.287 16 C 0.074 3.926 17 C -0.211 4.211 18 S 0.081 5.919 19 C 0.067 3.933 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.162 4.162 23 N -0.464 5.464 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.330 0.670 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.190 0.810 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -4.186 -18.920 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.044 3.956 3 H 0.108 0.892 4 N -0.299 5.299 5 C 0.082 3.918 6 H 0.039 0.961 7 C -0.230 4.230 8 C -0.616 4.616 9 H 0.081 0.919 10 C -0.177 4.177 11 N -0.547 5.547 12 Si 0.868 3.132 13 H -0.214 1.214 14 H -0.199 1.199 15 H -0.213 1.213 16 C -0.056 4.056 17 C -0.350 4.350 18 S 0.335 5.665 19 C -0.211 4.211 20 C -0.101 4.101 21 C -0.209 4.209 22 C -0.201 4.201 23 N -0.178 5.178 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.207 0.793 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.248 -3.112 -18.703 19.963 hybrid contribution -1.226 -0.824 0.183 1.489 sum -7.474 -3.936 -18.519 20.355 Atomic orbital electron populations 1.22452 0.96535 1.01662 1.02233 1.20000 0.92183 0.96707 0.86734 0.89207 1.60557 1.53095 1.11821 1.04469 1.19636 0.95122 0.90735 0.86276 0.96062 1.22823 0.97669 1.01155 1.01345 1.22033 1.04088 1.16955 1.18507 0.91875 1.25666 0.96493 1.03257 0.92324 1.70791 1.25863 1.21939 1.36082 0.84175 0.76285 0.76204 0.76504 1.21414 1.19933 1.21277 1.20339 0.97353 0.95909 0.92024 1.27002 1.05510 1.03143 0.99312 1.83712 1.46281 1.35085 1.01450 1.25905 1.00126 0.97202 0.97834 1.20330 1.00232 1.05390 0.84166 1.23124 1.03750 0.93309 1.00691 1.23122 0.96963 0.98546 1.01428 1.65842 1.25166 1.28117 0.98694 0.93026 0.92134 0.91931 0.85252 0.92590 0.95876 0.93428 0.92234 0.79309 0.85285 0.88319 0.87512 0.87673 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.12 37.16 0.34 -2.32 16 2 C 0.16 2.86 3.10 -68.87 -0.21 2.65 16 3 H 0.09 1.77 7.27 -51.93 -0.38 1.39 16 4 N -0.67 -13.45 4.95 -102.17 -0.51 -13.96 16 5 C 0.19 4.42 2.25 -68.86 -0.15 4.27 16 6 H 0.02 0.51 5.76 -51.93 -0.30 0.21 16 7 C -0.17 -3.62 8.42 37.16 0.31 -3.30 16 8 C -0.58 -16.10 9.13 -34.44 -0.31 -16.41 16 9 H 0.06 1.93 8.06 -52.49 -0.42 1.51 16 10 C 0.03 0.77 5.33 -17.82 -0.10 0.68 16 11 N -0.91 -28.12 13.70 55.43 0.76 -27.36 16 12 Si 1.04 25.09 26.18 -169.99 -4.45 20.64 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.00 5.51 56.52 0.31 -5.69 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.07 1.30 6.07 -84.22 -0.51 0.79 16 17 C -0.21 -3.50 10.53 29.12 0.31 -3.20 16 18 S 0.08 1.08 21.94 -107.50 -2.36 -1.28 16 19 C 0.07 0.95 7.04 -13.46 -0.09 0.85 16 20 C -0.08 -0.83 6.33 -91.78 -0.58 -1.41 16 21 C -0.17 -1.35 10.01 -26.73 -0.27 -1.61 16 22 C -0.16 -1.37 10.23 -26.73 -0.27 -1.65 16 23 N -0.46 -7.72 10.30 -8.06 -0.08 -7.81 16 24 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.06 0.94 6.78 -51.92 -0.35 0.59 16 26 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 27 H 0.33 6.16 7.80 -39.29 -0.31 5.85 16 28 H 0.06 1.24 5.01 -51.93 -0.26 0.98 16 29 H 0.02 0.42 6.78 -51.92 -0.35 0.07 16 30 H 0.05 0.98 8.05 -51.92 -0.42 0.56 16 31 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 32 H 0.19 3.26 7.50 -52.49 -0.39 2.87 16 33 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 0.80 7.22 -51.93 -0.38 0.42 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -30.54 311.95 -8.81 -39.35 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.33 Total: 6.40 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -1.55 Total: -20.68 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.17 Total: -49.12 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.45 Total: 20.64 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.36 Total: -1.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.54 -8.81 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309728089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.788 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds