Wall clock time and date at job start Mon Mar 30 2020 07:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47112 * 2 1 4 4 N 1.46899 * 109.46670 * 120.00181 * 2 1 3 5 5 C 1.46902 * 110.99893 * 271.50689 * 4 2 1 6 6 H 1.08992 * 109.47460 * 344.93124 * 5 4 2 7 7 C 1.53003 * 109.46854 * 104.92949 * 5 4 2 8 8 C 1.50698 * 109.47172 * 224.92357 * 5 4 2 9 9 H 1.07991 * 120.00179 * 354.73196 * 8 5 4 10 10 C 1.37882 * 119.99565 * 174.72783 * 8 5 4 11 11 N 1.31514 * 119.99595 * 164.62181 * 10 8 5 12 12 Si 1.86793 * 120.00296 * 344.62031 * 10 8 5 13 13 H 1.48506 * 109.47168 * 269.99689 * 12 10 8 14 14 H 1.48503 * 109.47494 * 29.99755 * 12 10 8 15 15 H 1.48501 * 109.47547 * 150.00068 * 12 10 8 16 16 C 1.50695 * 109.46684 * 239.99970 * 2 1 3 17 17 C 1.33649 * 122.74898 * 234.70981 * 16 2 1 18 18 S 1.76200 * 107.92335 * 179.97438 * 17 16 2 19 19 C 1.70979 * 90.28424 * 0.27488 * 18 17 16 20 20 C 1.50693 * 124.91535 * 179.84130 * 19 18 17 21 21 C 1.53001 * 117.50018 * 8.62233 * 20 19 18 22 22 C 1.52997 * 59.99929 * 252.50854 * 21 20 19 23 23 N 1.29028 * 110.16584 * 359.83972 * 19 18 17 24 24 H 1.08997 * 109.47471 * 182.46639 * 1 2 3 25 25 H 1.09008 * 109.46870 * 302.46544 * 1 2 3 26 26 H 1.09001 * 109.46866 * 62.45860 * 1 2 3 27 27 H 1.00896 * 111.00605 * 35.46922 * 4 2 1 28 28 H 1.08991 * 109.47343 * 174.92305 * 7 5 4 29 29 H 1.09008 * 109.47027 * 294.92041 * 7 5 4 30 30 H 1.09007 * 109.47097 * 54.91581 * 7 5 4 31 31 H 0.97002 * 120.00385 * 354.90186 * 11 10 8 32 32 H 1.08002 * 126.03539 * 0.03714 * 17 16 2 33 33 H 1.09003 * 115.55251 * 154.32998 * 20 19 18 34 34 H 1.08996 * 117.49574 * 359.97438 * 21 20 19 35 35 H 1.09003 * 117.50015 * 145.02015 * 21 20 19 36 36 H 1.08997 * 117.50352 * 252.51090 * 22 21 20 37 37 H 1.08998 * 117.52070 * 107.47927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1610 0.2405 2.3252 6 1 2.1303 1.2649 1.9542 7 6 1.0153 0.0222 3.3155 8 6 3.4769 -0.0037 3.0178 9 1 4.1030 -0.8289 2.7123 10 6 3.8816 0.8266 4.0416 11 7 4.8573 0.4562 4.8418 12 14 3.0441 2.4774 4.2918 13 1 3.7526 3.5167 3.5024 14 1 1.6321 2.3897 3.8403 15 1 3.0817 2.8384 5.7318 16 6 2.0322 -0.7104 -1.2304 17 6 2.8854 -1.7376 -1.1746 18 16 3.2069 -2.2658 -2.8246 19 6 2.1685 -1.0478 -3.4258 20 6 1.8766 -0.8059 -4.8843 21 6 2.3949 -1.8369 -5.8890 22 6 3.0577 -0.4613 -5.7936 23 7 1.6711 -0.3657 -2.4501 24 1 -0.3634 -1.0267 0.0442 25 1 -0.3633 0.5517 0.8671 26 1 -0.3633 0.4752 -0.9112 27 1 1.4169 -1.4642 1.4429 28 1 1.1689 0.6502 4.1930 29 1 0.0699 0.2857 2.8412 30 1 0.9908 -1.0248 3.6177 31 1 5.2424 -0.4303 4.7592 32 1 3.3032 -2.1685 -0.2767 33 1 0.9200 -0.3297 -5.0996 34 1 2.9475 -2.6898 -5.4950 35 1 1.7793 -2.0392 -6.7655 36 1 2.8782 0.2415 -6.6072 37 1 4.0460 -0.4090 -5.3368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309728089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:50 Heat of formation + Delta-G solvation = 50.293717 kcal Electronic energy + Delta-G solvation = -17771.130100 eV Core-core repulsion = 15061.245759 eV Total energy + Delta-G solvation = -2709.884342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08189 -38.64113 -37.75507 -35.03387 -32.87641 -30.52586 -29.10810 -26.80042 -26.51639 -24.34923 -23.33560 -22.02812 -21.86397 -20.56121 -19.59414 -18.36781 -17.14178 -16.62327 -16.33971 -15.67703 -15.46770 -15.21029 -15.10001 -14.53817 -14.32997 -14.03355 -13.77830 -13.48072 -13.15371 -13.05572 -12.71358 -12.69674 -12.50907 -12.34706 -12.01703 -11.81545 -11.67931 -11.48628 -11.36179 -11.02080 -10.63270 -10.46445 -10.28129 -9.54611 -9.21930 -8.60877 -6.27570 -0.22016 0.41386 0.77465 1.47428 1.52352 1.69510 1.76645 2.52118 2.73423 2.97965 3.11243 3.47562 3.80204 3.93271 4.01374 4.17870 4.21827 4.29131 4.46607 4.53793 4.63154 4.70546 4.73237 4.75790 4.83116 4.94838 4.99012 5.05624 5.07492 5.12297 5.18568 5.25851 5.46044 5.90725 6.12155 6.38914 6.65211 6.79280 6.84312 7.49698 8.70073 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031766 B = 0.004448 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.238612 B = 6293.022641 C = 6509.749459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.071 0.929 4 N -0.678 5.678 5 C 0.194 3.806 6 H 0.022 0.978 7 C -0.166 4.166 8 C -0.578 4.578 9 H 0.019 0.981 10 C -0.026 4.026 11 N -0.947 5.947 12 Si 1.081 2.919 13 H -0.281 1.281 14 H -0.235 1.235 15 H -0.287 1.287 16 C 0.064 3.936 17 C -0.246 4.246 18 S 0.136 5.864 19 C 0.071 3.929 20 C -0.106 4.106 21 C -0.152 4.152 22 C -0.155 4.155 23 N -0.492 5.492 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.338 0.662 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.251 0.749 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 -3.695 -21.400 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.089 0.911 4 N -0.308 5.308 5 C 0.084 3.916 6 H 0.040 0.960 7 C -0.224 4.224 8 C -0.616 4.616 9 H 0.037 0.963 10 C -0.223 4.223 11 N -0.584 5.584 12 Si 0.902 3.098 13 H -0.207 1.207 14 H -0.158 1.158 15 H -0.213 1.213 16 C -0.067 4.067 17 C -0.384 4.384 18 S 0.391 5.609 19 C -0.207 4.207 20 C -0.128 4.128 21 C -0.190 4.190 22 C -0.194 4.194 23 N -0.207 5.207 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.157 0.843 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.191 0.809 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.268 -2.658 -21.215 22.924 hybrid contribution -0.511 -1.102 0.778 1.442 sum -8.779 -3.760 -20.438 22.559 Atomic orbital electron populations 1.22316 0.94274 1.02316 1.02711 1.19920 0.93942 0.95464 0.86161 0.91104 1.60304 1.54430 1.11778 1.04286 1.19435 0.93420 0.91270 0.87425 0.96027 1.22679 0.98168 1.01178 1.00418 1.22261 1.05780 1.15109 1.18471 0.96259 1.27105 0.96419 1.06672 0.92074 1.70928 1.28005 1.21317 1.38132 0.83690 0.77566 0.71928 0.76606 1.20697 1.15826 1.21327 1.20268 0.97822 0.96229 0.92396 1.26961 1.06341 1.04061 1.01069 1.83424 1.45258 1.33856 0.98396 1.26640 0.98728 0.96229 0.99088 1.20546 1.01592 1.08247 0.82427 1.23265 1.02914 0.92648 1.00129 1.23242 0.95551 0.99660 1.00935 1.65878 1.26765 1.29391 0.98636 0.92230 0.91637 0.91346 0.84314 0.93417 0.92404 0.93416 0.94042 0.80946 0.84543 0.88502 0.84845 0.85458 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.12 71.98 0.66 -3.97 16 2 C 0.16 5.69 3.10 44.17 0.14 5.83 16 3 H 0.07 2.79 7.27 -2.39 -0.02 2.77 16 4 N -0.68 -27.31 4.95 -477.17 -2.36 -29.67 16 5 C 0.19 8.88 2.25 44.17 0.10 8.98 16 6 H 0.02 1.01 5.76 -2.39 -0.01 1.00 16 7 C -0.17 -6.66 8.42 71.98 0.61 -6.06 16 8 C -0.58 -33.13 9.13 25.60 0.23 -32.90 16 9 H 0.02 1.24 8.06 -2.92 -0.02 1.21 16 10 C -0.03 -1.52 5.33 84.66 0.45 -1.06 16 11 N -0.95 -60.46 13.70 21.45 0.29 -60.16 16 12 Si 1.08 50.14 26.18 68.60 1.80 51.93 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.23 -9.37 5.51 99.48 0.55 -8.82 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 C 0.06 2.23 6.07 41.52 0.25 2.48 16 17 C -0.25 -8.25 10.53 66.78 0.70 -7.55 16 18 S 0.14 3.45 21.94 -56.49 -1.24 2.21 16 19 C 0.07 1.88 7.04 88.52 0.62 2.51 16 20 C -0.11 -1.96 6.33 -11.54 -0.07 -2.03 16 21 C -0.15 -1.86 10.01 30.59 0.31 -1.56 16 22 C -0.16 -2.16 10.23 30.59 0.31 -1.85 16 23 N -0.49 -15.97 10.30 -179.40 -1.85 -17.81 16 24 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 25 H 0.06 1.84 6.78 -2.38 -0.02 1.83 16 26 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 27 H 0.34 12.53 7.80 -89.70 -0.70 11.83 16 28 H 0.05 1.99 5.01 -2.39 -0.01 1.98 16 29 H 0.06 1.93 6.78 -2.38 -0.02 1.91 16 30 H 0.05 1.89 8.05 -2.38 -0.02 1.87 16 31 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 32 H 0.17 6.27 7.50 -2.91 -0.02 6.25 16 33 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 1.25 7.22 -2.39 -0.02 1.23 16 35 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.35 311.95 1.13 -67.22 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.18 Total: 23.45 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 4.31 Total: -37.17 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.91 Total: -107.65 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.80 Total: 51.93 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.24 Total: 2.21 kcal Total: -68.35 1.13 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309728089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.514 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds