Wall clock time and date at job start Mon Mar 30 2020 07:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47040 * 2 1 4 4 C 1.50704 * 109.46888 * 239.99875 * 2 1 3 5 5 H 1.07996 * 119.99884 * 239.99798 * 4 2 1 6 6 C 1.37869 * 120.00013 * 60.00303 * 4 2 1 7 7 N 1.31517 * 120.00108 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47322 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46777 * 120.00013 * 8 6 4 11 11 H 1.48493 * 109.47393 * 239.99504 * 8 6 4 12 12 N 1.46894 * 109.46922 * 120.00016 * 2 1 3 13 13 C 1.46903 * 111.00197 * 274.99759 * 12 2 1 14 14 H 1.09003 * 109.46807 * 35.00286 * 13 12 2 15 15 C 1.52994 * 109.47159 * 275.00611 * 13 12 2 16 16 C 1.50698 * 109.47252 * 155.00289 * 13 12 2 17 17 C 1.33638 * 122.74865 * 355.02374 * 16 13 12 18 18 S 1.76198 * 107.92230 * 180.02562 * 17 16 13 19 19 C 1.70978 * 90.28341 * 0.02562 * 18 17 16 20 20 C 1.50706 * 124.91394 * 179.97438 * 19 18 17 21 21 C 1.52995 * 117.50181 * 8.77412 * 20 19 18 22 22 C 1.52993 * 117.50081 * 300.11177 * 20 19 18 23 23 N 1.29023 * 110.16589 * 0.24257 * 19 18 17 24 24 H 1.08996 * 109.47142 * 299.99942 * 1 2 3 25 25 H 1.08999 * 109.46828 * 60.00179 * 1 2 3 26 26 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00255 * 180.02562 * 7 6 4 28 28 H 1.00905 * 111.00111 * 151.04473 * 12 2 1 29 29 H 1.09003 * 109.46995 * 299.99560 * 15 13 12 30 30 H 1.08999 * 109.47566 * 59.99656 * 15 13 12 31 31 H 1.09002 * 109.47374 * 179.97438 * 15 13 12 32 32 H 1.07996 * 126.03834 * 0.04037 * 17 16 13 33 33 H 1.08998 * 115.54512 * 154.44174 * 20 19 18 34 34 H 1.09000 * 117.49859 * 0.02562 * 21 20 19 35 35 H 1.08999 * 117.49900 * 145.01759 * 21 20 19 36 36 H 1.08998 * 117.50372 * 214.98309 * 22 20 19 37 37 H 1.09006 * 117.50059 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2865 -3.6038 10 1 1.1677 -1.5866 -4.8164 11 1 3.1472 -0.1860 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2577 0.9329 2.2907 15 6 3.4111 0.9809 2.3223 16 6 1.9787 -0.5676 3.6259 17 6 1.7538 -1.8848 3.6456 18 16 1.7059 -2.4015 5.3294 19 6 1.9924 -0.7949 5.8394 20 6 2.1017 -0.3525 7.2759 21 6 2.1509 -1.4420 8.3489 22 6 0.8916 -0.5881 8.1818 23 7 2.0957 -0.0153 4.8166 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7082 1.1608 -3.4844 28 1 2.9174 -1.1205 1.0287 29 1 4.2360 0.2706 2.3785 30 1 3.4862 1.5525 1.3972 31 1 3.4576 1.6602 3.1735 32 1 1.6245 -2.5203 2.7820 33 1 2.6903 0.5489 7.4466 34 1 2.1046 -2.4788 8.0159 35 1 2.7715 -1.2571 9.2257 36 1 0.6840 0.1580 8.9488 37 1 0.0160 -1.0628 7.7388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309728357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:55 Heat of formation + Delta-G solvation = 65.548671 kcal Electronic energy + Delta-G solvation = -17681.368717 eV Core-core repulsion = 14972.145880 eV Total energy + Delta-G solvation = -2709.222837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82431 -37.51183 -36.16366 -33.13293 -30.60466 -29.19187 -27.07026 -25.42666 -25.19347 -23.14332 -22.70235 -20.90736 -19.91888 -19.02342 -17.46306 -16.44120 -16.07154 -15.14229 -14.92926 -14.35736 -14.19295 -13.76090 -13.41466 -13.22459 -12.49819 -12.37221 -12.20690 -11.96342 -11.76548 -11.50166 -11.26274 -10.96975 -10.84062 -10.80658 -10.67841 -10.46168 -10.37712 -10.14798 -9.94151 -9.42974 -9.11680 -8.85803 -8.50625 -8.34643 -7.35358 -6.04639 -4.11073 0.96207 1.56114 1.97838 3.01584 3.27488 3.35599 3.39315 3.63644 3.92710 4.38483 4.54446 4.68944 4.83580 5.15094 5.27010 5.32923 5.45985 5.54676 5.69682 5.76334 5.76921 5.79600 5.84024 6.04304 6.28346 6.44063 6.46429 6.64572 6.88889 7.13995 7.20302 7.48675 7.75771 7.85565 8.05405 8.24248 8.34121 8.61934 8.99071 9.55026 11.01781 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044125 B = 0.003918 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.407970 B = 7143.968235 C = 7295.258153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.683 5.683 13 C 0.158 3.842 14 H 0.088 0.912 15 C -0.167 4.167 16 C 0.078 3.922 17 C -0.217 4.217 18 S 0.076 5.924 19 C 0.069 3.931 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.162 4.162 23 N -0.463 5.463 24 H 0.004 0.996 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.334 0.666 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.189 0.811 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -3.908 18.903 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.023 0.977 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.314 5.314 13 C 0.044 3.956 14 H 0.106 0.894 15 C -0.226 4.226 16 C -0.052 4.052 17 C -0.355 4.355 18 S 0.330 5.670 19 C -0.210 4.210 20 C -0.101 4.101 21 C -0.209 4.209 22 C -0.201 4.201 23 N -0.177 5.177 24 H 0.023 0.977 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.206 0.794 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.150 -4.438 19.467 19.999 hybrid contribution 1.079 0.599 -1.966 2.322 sum 2.229 -3.839 17.500 18.054 Atomic orbital electron populations 1.21740 0.97889 0.99352 0.99397 1.19109 0.92480 0.92617 0.85117 0.97667 1.21264 1.31446 1.12532 0.90364 0.92155 1.24910 0.95036 0.94985 0.99044 1.69907 1.36582 1.22889 1.23388 0.86473 0.78600 0.79605 0.82901 1.19768 1.21002 1.21107 1.60653 1.32345 1.32698 1.05752 1.19853 0.97545 0.91927 0.86248 0.89398 1.22341 0.97408 1.00678 1.02187 1.20429 1.00524 0.91441 0.92818 1.26970 1.10508 0.99632 0.98368 1.83680 1.68389 1.12872 1.02037 1.25920 1.04850 0.92674 0.97518 1.20338 1.04126 1.01462 0.84167 1.23133 1.01418 0.96332 1.00005 1.23128 0.92328 1.03022 1.01602 1.65859 1.16230 1.37690 0.97936 0.97741 0.90019 0.94995 0.92957 0.84802 0.93182 0.91767 0.92329 0.79377 0.85262 0.88319 0.87526 0.87692 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.18 37.16 0.34 -2.78 16 2 C 0.21 5.31 2.41 -68.86 -0.17 5.14 16 3 H 0.01 0.15 7.11 -51.93 -0.37 -0.22 16 4 C -0.52 -13.91 8.59 -34.44 -0.30 -14.21 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.24 4.88 -102.17 -0.50 -14.74 16 13 C 0.16 3.01 2.93 -68.87 -0.20 2.80 16 14 H 0.09 1.81 7.11 -51.93 -0.37 1.44 16 15 C -0.17 -2.93 9.05 37.15 0.34 -2.60 16 16 C 0.08 1.38 6.06 -84.23 -0.51 0.87 16 17 C -0.22 -3.50 10.53 29.12 0.31 -3.20 16 18 S 0.08 0.99 21.94 -107.50 -2.36 -1.36 16 19 C 0.07 0.96 7.04 -13.46 -0.09 0.87 16 20 C -0.08 -0.83 6.33 -91.77 -0.58 -1.42 16 21 C -0.17 -1.34 10.02 -26.70 -0.27 -1.61 16 22 C -0.16 -1.35 10.24 -26.70 -0.27 -1.63 16 23 N -0.46 -7.80 10.36 -8.06 -0.08 -7.89 16 24 H 0.00 0.08 7.43 -51.93 -0.39 -0.30 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 6.83 7.96 -39.29 -0.31 6.52 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.06 1.19 7.43 -51.93 -0.39 0.81 16 31 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.19 3.08 7.50 -52.49 -0.39 2.68 16 33 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 0.79 7.23 -51.93 -0.38 0.41 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -28.62 317.71 -9.44 -38.07 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.40 Total: 5.79 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.50 Total: -16.15 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.05 Total: -47.19 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.36 Total: -1.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.62 -9.44 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309728357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.616 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds