Wall clock time and date at job start Mon Mar 30 2020 07:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47040 * 2 1 4 4 C 1.50704 * 109.46888 * 239.99875 * 2 1 3 5 5 H 1.07996 * 119.99884 * 239.99798 * 4 2 1 6 6 C 1.37869 * 120.00013 * 60.00303 * 4 2 1 7 7 N 1.31517 * 120.00108 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47322 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46777 * 120.00013 * 8 6 4 11 11 H 1.48493 * 109.47393 * 239.99504 * 8 6 4 12 12 N 1.46894 * 109.46922 * 120.00016 * 2 1 3 13 13 C 1.46903 * 111.00197 * 274.99759 * 12 2 1 14 14 H 1.09003 * 109.46807 * 35.00286 * 13 12 2 15 15 C 1.52994 * 109.47159 * 275.00611 * 13 12 2 16 16 C 1.50698 * 109.47252 * 155.00289 * 13 12 2 17 17 C 1.33638 * 122.74865 * 355.02374 * 16 13 12 18 18 S 1.76198 * 107.92230 * 180.02562 * 17 16 13 19 19 C 1.70978 * 90.28341 * 0.02562 * 18 17 16 20 20 C 1.50706 * 124.91394 * 179.97438 * 19 18 17 21 21 C 1.52995 * 117.50181 * 8.77412 * 20 19 18 22 22 C 1.52993 * 117.50081 * 300.11177 * 20 19 18 23 23 N 1.29023 * 110.16589 * 0.24257 * 19 18 17 24 24 H 1.08996 * 109.47142 * 299.99942 * 1 2 3 25 25 H 1.08999 * 109.46828 * 60.00179 * 1 2 3 26 26 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00255 * 180.02562 * 7 6 4 28 28 H 1.00905 * 111.00111 * 151.04473 * 12 2 1 29 29 H 1.09003 * 109.46995 * 299.99560 * 15 13 12 30 30 H 1.08999 * 109.47566 * 59.99656 * 15 13 12 31 31 H 1.09002 * 109.47374 * 179.97438 * 15 13 12 32 32 H 1.07996 * 126.03834 * 0.04037 * 17 16 13 33 33 H 1.08998 * 115.54512 * 154.44174 * 20 19 18 34 34 H 1.09000 * 117.49859 * 0.02562 * 21 20 19 35 35 H 1.08999 * 117.49900 * 145.01759 * 21 20 19 36 36 H 1.08998 * 117.50372 * 214.98309 * 22 20 19 37 37 H 1.09006 * 117.50059 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2865 -3.6038 10 1 1.1677 -1.5866 -4.8164 11 1 3.1472 -0.1860 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2577 0.9329 2.2907 15 6 3.4111 0.9809 2.3223 16 6 1.9787 -0.5676 3.6259 17 6 1.7538 -1.8848 3.6456 18 16 1.7059 -2.4015 5.3294 19 6 1.9924 -0.7949 5.8394 20 6 2.1017 -0.3525 7.2759 21 6 2.1509 -1.4420 8.3489 22 6 0.8916 -0.5881 8.1818 23 7 2.0957 -0.0153 4.8166 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7082 1.1608 -3.4844 28 1 2.9174 -1.1205 1.0287 29 1 4.2360 0.2706 2.3785 30 1 3.4862 1.5525 1.3972 31 1 3.4576 1.6602 3.1735 32 1 1.6245 -2.5203 2.7820 33 1 2.6903 0.5489 7.4466 34 1 2.1046 -2.4788 8.0159 35 1 2.7715 -1.2571 9.2257 36 1 0.6840 0.1580 8.9488 37 1 0.0160 -1.0628 7.7388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309728357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:55 Heat of formation + Delta-G solvation = 48.767602 kcal Electronic energy + Delta-G solvation = -17682.096399 eV Core-core repulsion = 14972.145880 eV Total energy + Delta-G solvation = -2709.950519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04836 -38.52779 -37.63553 -35.02450 -32.38204 -30.50055 -28.82461 -27.28171 -26.56016 -24.50330 -23.31909 -22.14739 -21.54852 -20.40962 -18.87178 -18.12632 -17.07763 -16.93054 -16.20169 -15.86816 -15.42997 -15.15875 -14.99343 -14.49812 -14.22703 -13.90751 -13.43558 -13.35416 -13.14176 -12.86035 -12.69967 -12.55369 -12.44772 -12.34422 -12.20822 -12.01115 -11.77973 -11.65129 -11.44805 -10.90780 -10.61133 -10.55718 -10.23975 -9.50899 -9.11866 -8.13277 -6.26982 -0.18036 0.45730 0.80480 1.41781 1.43816 1.55253 1.80213 2.41140 2.78661 3.01321 3.16200 3.56497 3.82642 3.97808 4.03849 4.22085 4.26376 4.32417 4.50346 4.73252 4.75200 4.79854 4.80721 4.94444 4.95946 5.04054 5.08106 5.12998 5.20517 5.20572 5.27653 5.49303 5.68065 5.83755 6.20261 6.43201 6.70370 6.87060 6.99000 7.43359 8.92962 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044125 B = 0.003918 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.407970 B = 7143.968235 C = 7295.258153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.220 3.780 3 H -0.024 1.024 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.673 5.673 13 C 0.161 3.839 14 H 0.065 0.935 15 C -0.155 4.155 16 C 0.064 3.936 17 C -0.241 4.241 18 S 0.144 5.856 19 C 0.068 3.932 20 C -0.108 4.108 21 C -0.151 4.151 22 C -0.154 4.154 23 N -0.496 5.496 24 H 0.014 0.986 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.337 0.663 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.182 0.818 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -5.335 20.811 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 H -0.006 1.006 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.304 5.304 13 C 0.047 3.953 14 H 0.083 0.917 15 C -0.214 4.214 16 C -0.066 4.066 17 C -0.380 4.380 18 S 0.400 5.600 19 C -0.210 4.210 20 C -0.130 4.130 21 C -0.189 4.189 22 C -0.193 4.193 23 N -0.211 5.211 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.692 -5.882 21.401 22.259 hybrid contribution 0.889 1.029 -2.405 2.763 sum 2.581 -4.853 18.995 19.774 Atomic orbital electron populations 1.21565 0.98012 0.98871 0.98739 1.18877 0.92348 0.91195 0.86360 1.00636 1.21571 1.31556 1.12682 0.91343 0.91998 1.25717 0.95182 0.95654 1.02032 1.70035 1.37510 1.24129 1.24094 0.85434 0.78051 0.78598 0.79078 1.18949 1.20734 1.20779 1.60535 1.32500 1.32591 1.04789 1.19713 0.97354 0.91622 0.86592 0.91667 1.22201 0.96974 1.00626 1.01615 1.20117 1.02111 0.91817 0.92583 1.27010 1.10903 0.99416 1.00695 1.83355 1.66967 1.11129 0.98592 1.26611 1.02589 0.93260 0.98497 1.20535 1.06575 1.03156 0.82759 1.23274 1.00973 0.95456 0.99208 1.23252 0.91749 1.03413 1.00852 1.65856 1.18391 1.38781 0.98106 0.96690 0.92303 0.95183 0.92874 0.84491 0.92342 0.93402 0.91464 0.80042 0.84950 0.88277 0.85034 0.85636 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 9.18 71.99 0.66 -5.13 16 2 C 0.22 11.26 2.41 44.17 0.11 11.37 16 3 H -0.02 -1.35 7.11 -2.39 -0.02 -1.37 16 4 C -0.53 -29.03 8.59 25.60 0.22 -28.81 16 5 H 0.06 3.28 7.62 -2.91 -0.02 3.26 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.00 11.32 21.44 0.24 -52.76 16 8 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.67 -28.71 4.88 -477.16 -2.33 -31.04 16 13 C 0.16 6.28 2.93 44.17 0.13 6.41 16 14 H 0.07 2.81 7.11 -2.39 -0.02 2.80 16 15 C -0.15 -5.57 9.05 71.98 0.65 -4.92 16 16 C 0.06 2.28 6.06 41.52 0.25 2.53 16 17 C -0.24 -7.71 10.53 66.78 0.70 -7.00 16 18 S 0.14 3.47 21.94 -56.49 -1.24 2.23 16 19 C 0.07 1.81 7.04 88.52 0.62 2.43 16 20 C -0.11 -2.03 6.33 -11.54 -0.07 -2.10 16 21 C -0.15 -1.83 10.02 30.62 0.31 -1.53 16 22 C -0.15 -2.10 10.24 30.62 0.31 -1.79 16 23 N -0.50 -16.53 10.36 -179.40 -1.86 -18.38 16 24 H 0.01 0.68 7.43 -2.39 -0.02 0.66 16 25 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.34 13.98 7.96 -89.69 -0.71 13.27 16 29 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 30 H 0.05 1.84 7.43 -2.39 -0.02 1.82 16 31 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 32 H 0.18 5.94 7.50 -2.91 -0.02 5.92 16 33 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.10 1.21 7.23 -2.39 -0.02 1.19 16 35 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -61.86 317.71 1.54 -60.32 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.35 Total: 21.60 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 4.34 Total: -27.36 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -3.94 Total: -102.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.24 Total: 2.23 kcal Total: -61.86 1.54 -60.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309728357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.092 kcal (2) G-P(sol) polarization free energy of solvation -61.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds