Wall clock time and date at job start Mon Mar 30 2020 07:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.50699 * 109.47013 * 175.00145 * 4 2 1 6 6 H 1.08000 * 120.00527 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00255 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99406 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00315 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47214 * 60.00345 * 9 7 5 11 11 H 1.48506 * 109.47132 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47350 * 299.99828 * 9 7 5 13 13 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 14 14 C 1.46899 * 111.00029 * 275.00154 * 13 2 1 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 2 16 16 N 1.29025 * 124.91623 * 89.71910 * 15 14 13 17 17 C 1.31784 * 117.12136 * 179.81506 * 16 15 14 18 18 C 1.50705 * 122.74612 * 180.22806 * 17 16 15 19 19 C 1.53001 * 117.49547 * 164.01371 * 18 17 16 20 20 C 1.52999 * 117.50083 * 95.35456 * 18 17 16 21 21 C 1.33638 * 114.50393 * 0.46996 * 17 16 15 22 22 S 1.70975 * 124.91287 * 270.02232 * 15 14 13 23 23 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 25 25 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 26 26 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 27 27 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 28 28 H 0.96997 * 119.99817 * 179.97438 * 8 7 5 29 29 H 1.00908 * 110.99583 * 38.95067 * 13 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 14 13 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 14 13 2 32 32 H 1.09000 * 115.54865 * 309.67721 * 18 17 16 33 33 H 1.08997 * 117.50211 * 359.97438 * 19 18 17 34 34 H 1.09001 * 117.49439 * 145.02023 * 19 18 17 35 35 H 1.08998 * 117.49843 * 214.97703 * 20 18 17 36 36 H 1.09001 * 117.50114 * 359.97244 * 20 18 17 37 37 H 1.07996 * 126.03993 * 179.72425 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1928 -2.3582 8 7 3.5763 -1.8371 -3.2999 9 14 6.0919 -1.0604 -2.4373 10 1 6.6845 -1.6865 -1.2281 11 1 6.5869 -1.7606 -3.6497 12 1 6.4844 0.3706 -2.4966 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5873 -0.5218 3.5561 16 7 3.8290 -0.6357 3.8879 17 6 4.0982 -1.3199 4.9816 18 6 5.5023 -1.5275 5.4883 19 6 5.6688 -2.0015 6.9335 20 6 6.0186 -0.5601 6.5552 21 6 3.0247 -1.8187 5.6017 22 16 1.5982 -1.3438 4.6826 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2618 -2.1369 28 1 4.0606 -2.2432 -4.0357 29 1 1.4494 -1.4979 1.4101 30 1 2.7588 1.0462 2.1182 31 1 1.0870 0.6163 2.5526 32 1 6.2181 -1.8944 4.7527 33 1 4.7629 -2.1627 7.5179 34 1 6.4945 -2.6798 7.1487 35 1 7.0743 -0.2907 6.5217 36 1 5.3431 0.2269 6.8903 37 1 3.0304 -2.4090 6.5060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309806916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:54 Heat of formation + Delta-G solvation = 63.701380 kcal Electronic energy + Delta-G solvation = -17431.285676 eV Core-core repulsion = 14721.982734 eV Total energy + Delta-G solvation = -2709.302942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03435 -37.21873 -36.42188 -32.89970 -31.49863 -29.23448 -27.24031 -26.30661 -24.47614 -22.87861 -22.53173 -21.23245 -19.81317 -19.26182 -17.84001 -16.19942 -15.89701 -15.44683 -15.22192 -14.53868 -14.33758 -13.90510 -13.70408 -13.42203 -12.74659 -12.55572 -12.33895 -11.80620 -11.74460 -11.64877 -11.43361 -11.34219 -11.00371 -10.74254 -10.58534 -10.54339 -10.43306 -10.04195 -9.46439 -9.34796 -9.25142 -8.94908 -8.64021 -8.19135 -7.65496 -5.82170 -3.79194 0.76318 1.42112 1.78355 2.80913 3.46957 3.49593 3.55395 3.63412 4.06756 4.63188 4.66814 4.74407 4.80894 4.92166 5.10051 5.28150 5.35112 5.43466 5.55428 5.60140 5.65947 5.69211 5.85594 5.90113 5.92795 6.00400 6.04146 6.18930 6.39600 6.60092 6.99412 7.48803 7.67455 7.92477 7.98668 8.02815 8.18935 8.64861 9.26106 9.82169 11.29984 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.005305 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.427804 B = 5277.260508 C = 6660.773411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.069 0.931 4 C 0.034 3.966 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.653 5.653 14 C 0.133 3.867 15 C 0.079 3.921 16 N -0.449 5.449 17 C 0.104 3.896 18 C -0.082 4.082 19 C -0.172 4.172 20 C -0.163 4.163 21 C -0.266 4.266 22 S 0.099 5.901 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.332 0.668 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 1.515 20.263 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.019 4.019 3 H 0.087 0.913 4 C -0.003 4.003 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.285 5.285 14 C 0.000 4.000 15 C -0.200 4.200 16 N -0.163 5.163 17 C -0.028 4.028 18 C -0.103 4.103 19 C -0.210 4.210 20 C -0.201 4.201 21 C -0.405 4.405 22 S 0.354 5.646 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.150 0.850 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.190 1.602 19.683 20.004 hybrid contribution 0.939 -0.192 0.405 1.040 sum -2.252 1.410 20.089 20.264 Atomic orbital electron populations 1.22577 0.99283 1.01378 1.00814 1.21854 0.89975 0.98387 0.91672 0.91312 1.19107 0.96334 0.95392 0.89485 1.21127 0.91840 1.32888 1.06769 0.92292 1.24986 0.97954 0.95903 0.96038 1.69956 1.35248 1.37102 1.12383 0.86700 0.86515 0.77977 0.77021 1.20367 1.21705 1.20520 1.60543 1.58216 1.08109 1.01589 1.20572 0.98696 0.94946 0.85794 1.27146 0.90754 1.01352 1.00775 1.65984 1.18425 1.17528 1.14347 1.19390 0.95035 0.96921 0.91447 1.20368 0.92451 1.05348 0.92118 1.23039 1.03493 0.97842 0.96578 1.22977 1.02043 0.93093 1.01991 1.26655 0.94318 1.11822 1.07729 1.83887 1.12521 1.48357 1.19846 0.92896 0.94372 0.92144 0.96483 0.96239 0.93353 0.85026 0.88132 0.93889 0.85955 0.88644 0.88059 0.88160 0.88776 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.16 37.15 0.34 -2.58 16 2 C 0.09 1.79 2.53 -67.72 -0.17 1.62 16 3 H 0.07 1.37 7.80 -51.93 -0.40 0.97 16 4 C 0.03 0.88 4.65 -27.88 -0.13 0.75 16 5 C -0.49 -14.05 8.84 -34.44 -0.30 -14.35 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.91 -27.91 13.29 55.43 0.74 -27.17 16 9 Si 0.89 22.88 29.54 -169.99 -5.02 17.86 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.65 -12.35 5.95 -107.99 -0.64 -12.99 16 14 C 0.13 2.10 6.06 -4.98 -0.03 2.07 16 15 C 0.08 1.25 6.90 -13.46 -0.09 1.15 16 16 N -0.45 -7.80 10.53 -8.05 -0.08 -7.88 16 17 C 0.10 1.51 6.41 -84.22 -0.54 0.98 16 18 C -0.08 -1.00 6.30 -91.77 -0.58 -1.58 16 19 C -0.17 -1.51 9.92 -26.69 -0.26 -1.77 16 20 C -0.16 -1.61 10.24 -26.69 -0.27 -1.88 16 21 C -0.27 -3.27 10.52 29.12 0.31 -2.96 16 22 S 0.10 1.23 23.18 -107.50 -2.49 -1.27 16 23 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.33 5.89 8.46 -39.29 -0.33 5.56 16 30 H 0.10 1.68 8.06 -51.93 -0.42 1.26 16 31 H 0.04 0.57 7.44 -51.93 -0.39 0.19 16 32 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.10 0.74 6.79 -51.93 -0.35 0.39 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.17 1.61 6.95 -52.49 -0.36 1.25 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -32.34 324.92 -10.01 -42.35 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.57 Total: 1.38 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.83 Total: -17.17 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.01 Total: -48.04 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.34 -10.01 -42.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.049 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds