Wall clock time and date at job start Mon Mar 30 2020 07:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.50699 * 109.47013 * 175.00145 * 4 2 1 6 6 H 1.08000 * 120.00527 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00255 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99406 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00315 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47214 * 60.00345 * 9 7 5 11 11 H 1.48506 * 109.47132 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47350 * 299.99828 * 9 7 5 13 13 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 14 14 C 1.46899 * 111.00029 * 275.00154 * 13 2 1 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 2 16 16 N 1.29025 * 124.91623 * 89.71910 * 15 14 13 17 17 C 1.31784 * 117.12136 * 179.81506 * 16 15 14 18 18 C 1.50705 * 122.74612 * 180.22806 * 17 16 15 19 19 C 1.53001 * 117.49547 * 164.01371 * 18 17 16 20 20 C 1.52999 * 117.50083 * 95.35456 * 18 17 16 21 21 C 1.33638 * 114.50393 * 0.46996 * 17 16 15 22 22 S 1.70975 * 124.91287 * 270.02232 * 15 14 13 23 23 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 25 25 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 26 26 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 27 27 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 28 28 H 0.96997 * 119.99817 * 179.97438 * 8 7 5 29 29 H 1.00908 * 110.99583 * 38.95067 * 13 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 14 13 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 14 13 2 32 32 H 1.09000 * 115.54865 * 309.67721 * 18 17 16 33 33 H 1.08997 * 117.50211 * 359.97438 * 19 18 17 34 34 H 1.09001 * 117.49439 * 145.02023 * 19 18 17 35 35 H 1.08998 * 117.49843 * 214.97703 * 20 18 17 36 36 H 1.09001 * 117.50114 * 359.97244 * 20 18 17 37 37 H 1.07996 * 126.03993 * 179.72425 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1928 -2.3582 8 7 3.5763 -1.8371 -3.2999 9 14 6.0919 -1.0604 -2.4373 10 1 6.6845 -1.6865 -1.2281 11 1 6.5869 -1.7606 -3.6497 12 1 6.4844 0.3706 -2.4966 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5873 -0.5218 3.5561 16 7 3.8290 -0.6357 3.8879 17 6 4.0982 -1.3199 4.9816 18 6 5.5023 -1.5275 5.4883 19 6 5.6688 -2.0015 6.9335 20 6 6.0186 -0.5601 6.5552 21 6 3.0247 -1.8187 5.6017 22 16 1.5982 -1.3438 4.6826 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2618 -2.1369 28 1 4.0606 -2.2432 -4.0357 29 1 1.4494 -1.4979 1.4101 30 1 2.7588 1.0462 2.1182 31 1 1.0870 0.6163 2.5526 32 1 6.2181 -1.8944 4.7527 33 1 4.7629 -2.1627 7.5179 34 1 6.4945 -2.6798 7.1487 35 1 7.0743 -0.2907 6.5217 36 1 5.3431 0.2269 6.8903 37 1 3.0304 -2.4090 6.5060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309806916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:54 Heat of formation + Delta-G solvation = 42.670601 kcal Electronic energy + Delta-G solvation = -17432.197639 eV Core-core repulsion = 14721.982734 eV Total energy + Delta-G solvation = -2710.214905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06723 -38.51438 -37.50858 -34.92585 -33.03721 -30.50140 -29.10441 -27.48451 -25.59898 -24.83579 -23.24805 -22.32485 -21.43502 -20.31503 -18.85557 -18.37031 -16.93262 -16.66902 -16.52716 -16.31436 -15.64255 -15.14802 -14.94646 -14.60449 -14.31207 -13.90698 -13.55735 -13.41981 -13.26046 -13.15566 -12.72535 -12.52200 -12.40607 -12.38428 -12.25371 -11.90621 -11.54843 -11.36557 -11.20635 -11.11704 -10.52265 -10.48667 -10.36662 -9.63538 -9.08089 -8.10359 -6.13921 -0.28346 0.41670 0.75235 1.38267 1.41633 1.49251 1.74971 2.46473 2.79181 3.11521 3.22992 3.49342 3.78832 3.93292 4.05898 4.19473 4.22461 4.26163 4.38382 4.48601 4.58105 4.61216 4.68874 4.75233 4.94638 4.97713 5.13840 5.19390 5.23541 5.26437 5.26858 5.50265 5.65892 5.90133 6.25999 6.42732 6.61852 6.89423 6.99705 7.51222 9.01497 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.005305 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.427804 B = 5277.260508 C = 6660.773411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.065 0.935 4 C 0.038 3.962 5 C -0.499 4.499 6 H 0.051 0.949 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.951 3.049 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.677 5.677 14 C 0.140 3.860 15 C 0.043 3.957 16 N -0.493 5.493 17 C 0.078 3.922 18 C -0.115 4.115 19 C -0.144 4.144 20 C -0.162 4.162 21 C -0.257 4.257 22 S 0.160 5.840 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.060 0.940 26 H -0.009 1.009 27 H -0.002 1.002 28 H 0.259 0.741 29 H 0.337 0.663 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 1.389 22.761 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.083 0.917 4 C 0.001 3.999 5 C -0.537 4.537 6 H 0.069 0.931 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.309 5.309 14 C 0.007 3.993 15 C -0.235 4.235 16 N -0.208 5.208 17 C -0.053 4.053 18 C -0.136 4.136 19 C -0.181 4.181 20 C -0.200 4.200 21 C -0.396 4.396 22 S 0.415 5.585 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.009 0.991 27 H 0.016 0.984 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.587 1.490 22.189 22.526 hybrid contribution 1.041 -0.185 -0.302 1.099 sum -2.546 1.305 21.887 22.073 Atomic orbital electron populations 1.22420 0.95951 1.02052 1.02453 1.21500 0.92557 0.97016 0.89800 0.91718 1.18990 0.94795 0.94285 0.91844 1.21460 0.93678 1.32280 1.06294 0.93108 1.25788 1.02527 0.95774 0.95870 1.70071 1.36953 1.38067 1.13004 0.85712 0.81129 0.78418 0.76975 1.20566 1.20843 1.19433 1.60296 1.58961 1.09173 1.02510 1.20470 0.99894 0.93891 0.84999 1.27056 0.91483 1.03063 1.01916 1.65975 1.19887 1.18848 1.16091 1.19714 0.96615 0.97583 0.91423 1.20402 0.91448 1.08257 0.93445 1.23170 1.04505 0.96999 0.93438 1.23038 1.02419 0.93765 1.00733 1.27112 0.93762 1.10513 1.08181 1.83561 1.10929 1.46342 1.17657 0.92716 0.91087 0.92092 0.99096 0.98387 0.93260 0.84443 0.89946 0.90757 0.87802 0.87086 0.86360 0.87295 0.89042 0.77775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 9.16 71.98 0.66 -4.54 16 2 C 0.10 4.00 2.53 44.91 0.11 4.12 16 3 H 0.06 2.60 7.80 -2.39 -0.02 2.58 16 4 C 0.04 2.03 4.65 29.85 0.14 2.17 16 5 C -0.50 -29.46 8.84 25.60 0.23 -29.24 16 6 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -59.06 13.29 21.45 0.28 -58.77 16 9 Si 0.95 47.70 29.54 68.60 2.03 49.73 16 10 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.68 -25.59 5.95 -495.58 -2.95 -28.54 16 14 C 0.14 4.34 6.06 85.56 0.52 4.86 16 15 C 0.04 1.32 6.90 88.52 0.61 1.93 16 16 N -0.49 -17.20 10.53 -179.40 -1.89 -19.09 16 17 C 0.08 2.21 6.41 41.52 0.27 2.48 16 18 C -0.11 -2.72 6.30 -11.54 -0.07 -2.79 16 19 C -0.14 -2.15 9.92 30.62 0.30 -1.85 16 20 C -0.16 -2.97 10.24 30.62 0.31 -2.66 16 21 C -0.26 -5.67 10.52 66.78 0.70 -4.97 16 22 S 0.16 3.58 23.18 -56.49 -1.31 2.27 16 23 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 24 H 0.07 1.72 7.45 -2.39 -0.02 1.70 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.34 11.83 8.46 -89.69 -0.76 11.07 16 30 H 0.08 2.81 8.06 -2.39 -0.02 2.79 16 31 H 0.07 1.81 7.44 -2.39 -0.02 1.79 16 32 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.11 1.30 6.79 -2.39 -0.02 1.29 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.21 2.99 6.95 -2.91 -0.02 2.97 16 Total: -1.00 -71.80 324.92 0.71 -71.09 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.30 Total: 13.55 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.24 Total: -30.25 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.55 Total: -106.40 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.31 Total: 2.27 kcal Total: -71.80 0.71 -71.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.762 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds