Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81393 * 103.00026 * 2 1 4 4 C 1.53006 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46505 * 304.99737 * 4 3 2 6 6 C 1.52997 * 109.47127 * 64.99866 * 4 3 2 7 7 C 1.52992 * 109.47223 * 185.00371 * 4 3 2 8 8 N 1.46497 * 109.47408 * 175.00006 * 7 4 3 9 9 C 1.38824 * 120.00485 * 179.97438 * 8 7 4 10 10 C 1.39796 * 119.58114 * 359.72310 * 9 8 7 11 11 C 1.38596 * 119.48722 * 179.78666 * 10 9 8 12 12 C 1.38386 * 118.68460 * 0.48232 * 11 10 9 13 13 C 1.40559 * 119.14581 * 359.74217 * 12 11 10 14 14 C 1.41318 * 119.78230 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.40021 * 119.99880 * 180.02562 * 14 13 12 17 17 N 1.30755 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00343 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47039 * 89.99537 * 18 16 14 20 20 H 1.48492 * 109.47275 * 209.99899 * 18 16 14 21 21 H 1.48502 * 109.46702 * 329.99909 * 18 16 14 22 22 N 1.31956 * 119.58367 * 179.97438 * 9 8 7 23 23 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46908 * 299.99827 * 1 2 3 25 25 H 1.09004 * 109.46962 * 59.99548 * 1 2 3 26 26 H 1.09007 * 109.47182 * 60.00180 * 3 2 1 27 27 H 1.08996 * 109.47554 * 300.00270 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 31 31 H 1.09002 * 109.46906 * 294.99936 * 7 4 3 32 32 H 1.09006 * 109.47717 * 54.99311 * 7 4 3 33 33 H 0.97008 * 119.99817 * 359.97438 * 8 7 4 34 34 H 1.08001 * 120.25725 * 0.02562 * 10 9 8 35 35 H 1.08006 * 120.65983 * 180.22643 * 11 10 9 36 36 H 1.07997 * 120.43077 * 179.76285 * 12 11 10 37 37 H 0.96996 * 119.99905 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3173 1.3917 -1.3083 7 6 4.0873 3.4251 0.1252 8 7 5.5390 3.5810 0.2446 9 6 6.0932 4.8475 0.3709 10 6 5.2581 5.9687 0.3772 11 6 5.8131 7.2319 0.5078 12 6 7.1879 7.3453 0.6187 13 6 7.9744 6.1805 0.6009 14 6 9.3795 6.2806 0.7137 15 1 9.8456 7.2497 0.8136 16 6 10.1675 5.1233 0.6961 17 7 9.6032 3.9499 0.5756 18 14 12.0248 5.2554 0.8459 19 1 12.4112 5.1972 2.2786 20 1 12.6616 4.1304 0.1153 21 1 12.4779 6.5439 0.2629 22 7 7.4019 4.9783 0.4784 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.8032 2.2371 0.8901 27 1 1.8032 2.2371 -0.8899 28 1 5.4004 1.5141 -1.3085 29 1 3.8895 1.9366 -2.1498 30 1 4.0716 0.3335 -1.3979 31 1 3.7365 3.9558 -0.7600 32 1 3.6035 3.8368 1.0110 33 1 6.1132 2.7991 0.2355 34 1 4.1885 5.8511 0.2849 35 1 5.1854 8.1108 0.5187 36 1 7.6504 8.3161 0.7179 37 1 10.1491 3.1482 0.5638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309909871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = 23.286784 kcal Electronic energy + Delta-G solvation = -17431.244953 eV Core-core repulsion = 14720.189503 eV Total energy + Delta-G solvation = -2711.055450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.37493 -36.77841 -33.87472 -32.74891 -30.33366 -29.31679 -28.82627 -27.20130 -25.43629 -25.14256 -21.56016 -20.61094 -20.00392 -17.37181 -16.40257 -16.33132 -15.37128 -14.94472 -14.72852 -14.32205 -14.10080 -13.89021 -13.76886 -13.27039 -13.18613 -12.78514 -12.63137 -12.19395 -11.97508 -11.80020 -11.26033 -11.15418 -10.97100 -10.94182 -10.86102 -10.57225 -10.40276 -10.04777 -9.89307 -9.46001 -8.85928 -7.88461 -7.82898 -7.48284 -6.48450 -6.30033 -4.44839 1.48231 2.41750 2.90116 3.13086 3.16301 3.26279 3.32620 4.00613 4.16772 4.71373 4.85477 4.87226 4.87901 4.92433 5.00933 5.36950 5.42435 5.46497 5.59696 5.88030 5.96660 6.04434 6.14659 6.17536 6.26956 6.39586 6.59768 6.88498 6.91936 6.97090 7.27915 7.62310 7.83848 7.94338 8.19562 8.39385 8.71320 8.83168 9.14894 10.27482 10.43220 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.003865 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.292138 B = 7242.285879 C = 8092.283278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.260 6.260 3 C -0.075 4.075 4 C -0.086 4.086 5 H 0.085 0.915 6 C -0.148 4.148 7 C 0.152 3.848 8 N -0.737 5.737 9 C 0.412 3.588 10 C -0.368 4.368 11 C -0.032 4.032 12 C -0.317 4.317 13 C 0.292 3.708 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 N -0.532 5.532 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 -6.899 -1.615 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.034 6.034 3 C -0.224 4.224 4 C -0.106 4.106 5 H 0.103 0.897 6 C -0.205 4.205 7 C 0.025 3.975 8 N -0.374 5.374 9 C 0.172 3.828 10 C -0.394 4.394 11 C -0.057 4.057 12 C -0.340 4.340 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.337 5.337 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.253 5.253 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.814 -8.666 -1.651 14.744 hybrid contribution -0.518 1.575 0.097 1.661 sum -12.332 -7.091 -1.554 14.310 Atomic orbital electron populations 1.23383 0.94874 1.06297 1.04807 1.86935 1.06576 1.11859 1.98016 1.23419 0.99954 0.93886 1.05135 1.21102 0.92028 0.97045 1.00386 0.89716 1.21881 1.01703 1.00982 0.95935 1.21012 0.82808 0.93359 1.00360 1.44093 1.04364 1.05814 1.83132 1.18511 0.90424 0.84116 0.89761 1.20596 0.97488 0.92917 1.28386 1.20590 0.94566 0.95259 0.95241 1.21532 0.93667 0.98442 1.20395 1.18200 0.93192 0.85522 0.86543 1.19577 0.90188 0.93855 1.43043 0.89924 1.26050 1.00594 0.95132 0.93617 1.70155 1.36331 0.98176 1.29066 0.86379 0.82597 0.79015 0.79081 1.19525 1.20253 1.18629 1.68215 1.06328 1.25965 1.24822 0.88273 0.90612 0.90601 0.89832 0.89829 0.91663 0.92567 0.91894 0.92965 0.93120 0.76901 0.89306 0.89009 0.88742 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.76 101.05 1.09 0.16 16 2 S -0.26 -2.77 21.19 -107.50 -2.28 -5.05 16 3 C -0.08 -0.78 5.38 37.16 0.20 -0.58 16 4 C -0.09 -1.07 2.42 -90.62 -0.22 -1.29 16 5 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.15 -1.87 8.89 37.16 0.33 -1.54 16 7 C 0.15 2.33 4.27 -4.05 -0.02 2.32 16 8 N -0.74 -14.75 5.45 -60.40 -0.33 -15.08 16 9 C 0.41 10.16 7.65 -155.32 -1.19 8.97 16 10 C -0.37 -8.58 9.34 -38.87 -0.36 -8.94 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.32 -8.15 9.83 -38.65 -0.38 -8.53 16 13 C 0.29 8.26 6.55 -85.00 -0.56 7.70 16 14 C -0.43 -11.91 9.14 -37.74 -0.34 -12.26 16 15 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 16 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 17 N -0.72 -19.20 11.46 55.55 0.64 -18.56 16 18 Si 0.90 18.91 29.56 -169.99 -5.02 13.89 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 N -0.53 -14.87 7.89 -10.32 -0.08 -14.95 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.92 7.18 -51.93 -0.37 0.55 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.05 0.80 7.91 -51.93 -0.41 0.39 16 32 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.40 7.96 7.78 -40.82 -0.32 7.65 16 34 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 35 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.27 6.56 8.29 -40.82 -0.34 6.23 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -29.87 320.60 -9.78 -39.65 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.58 Total: 8.68 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.95 Total: -13.41 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.23 Total: -48.59 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.28 Total: -5.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.87 -9.78 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309909871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.934 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds