Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81393 * 103.00026 * 2 1 4 4 C 1.53006 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46505 * 304.99737 * 4 3 2 6 6 C 1.52997 * 109.47127 * 64.99866 * 4 3 2 7 7 C 1.52992 * 109.47223 * 185.00371 * 4 3 2 8 8 N 1.46497 * 109.47408 * 175.00006 * 7 4 3 9 9 C 1.38824 * 120.00485 * 179.97438 * 8 7 4 10 10 C 1.39796 * 119.58114 * 359.72310 * 9 8 7 11 11 C 1.38596 * 119.48722 * 179.78666 * 10 9 8 12 12 C 1.38386 * 118.68460 * 0.48232 * 11 10 9 13 13 C 1.40559 * 119.14581 * 359.74217 * 12 11 10 14 14 C 1.41318 * 119.78230 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.40021 * 119.99880 * 180.02562 * 14 13 12 17 17 N 1.30755 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00343 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47039 * 89.99537 * 18 16 14 20 20 H 1.48492 * 109.47275 * 209.99899 * 18 16 14 21 21 H 1.48502 * 109.46702 * 329.99909 * 18 16 14 22 22 N 1.31956 * 119.58367 * 179.97438 * 9 8 7 23 23 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46908 * 299.99827 * 1 2 3 25 25 H 1.09004 * 109.46962 * 59.99548 * 1 2 3 26 26 H 1.09007 * 109.47182 * 60.00180 * 3 2 1 27 27 H 1.08996 * 109.47554 * 300.00270 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 31 31 H 1.09002 * 109.46906 * 294.99936 * 7 4 3 32 32 H 1.09006 * 109.47717 * 54.99311 * 7 4 3 33 33 H 0.97008 * 119.99817 * 359.97438 * 8 7 4 34 34 H 1.08001 * 120.25725 * 0.02562 * 10 9 8 35 35 H 1.08006 * 120.65983 * 180.22643 * 11 10 9 36 36 H 1.07997 * 120.43077 * 179.76285 * 12 11 10 37 37 H 0.96996 * 119.99905 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3173 1.3917 -1.3083 7 6 4.0873 3.4251 0.1252 8 7 5.5390 3.5810 0.2446 9 6 6.0932 4.8475 0.3709 10 6 5.2581 5.9687 0.3772 11 6 5.8131 7.2319 0.5078 12 6 7.1879 7.3453 0.6187 13 6 7.9744 6.1805 0.6009 14 6 9.3795 6.2806 0.7137 15 1 9.8456 7.2497 0.8136 16 6 10.1675 5.1233 0.6961 17 7 9.6032 3.9499 0.5756 18 14 12.0248 5.2554 0.8459 19 1 12.4112 5.1972 2.2786 20 1 12.6616 4.1304 0.1153 21 1 12.4779 6.5439 0.2629 22 7 7.4019 4.9783 0.4784 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.8032 2.2371 0.8901 27 1 1.8032 2.2371 -0.8899 28 1 5.4004 1.5141 -1.3085 29 1 3.8895 1.9366 -2.1498 30 1 4.0716 0.3335 -1.3979 31 1 3.7365 3.9558 -0.7600 32 1 3.6035 3.8368 1.0110 33 1 6.1132 2.7991 0.2355 34 1 4.1885 5.8511 0.2849 35 1 5.1854 8.1108 0.5187 36 1 7.6504 8.3161 0.7179 37 1 10.1491 3.1482 0.5638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309909871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = 7.080073 kcal Electronic energy + Delta-G solvation = -17431.947729 eV Core-core repulsion = 14720.189503 eV Total energy + Delta-G solvation = -2711.758226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17224 -38.13708 -35.62715 -34.40156 -32.24417 -30.66494 -29.87715 -28.15177 -27.29120 -26.57690 -23.40992 -22.32449 -21.28400 -19.26238 -18.04252 -17.37489 -16.62939 -16.42937 -16.36826 -15.90780 -15.34762 -15.10330 -14.87482 -14.46978 -14.38521 -14.29767 -13.73171 -13.61930 -13.56522 -12.93575 -12.82250 -12.72321 -12.59894 -12.32134 -12.13751 -12.02621 -11.86562 -11.71834 -11.26603 -10.85909 -10.64476 -9.82278 -9.43472 -8.64536 -8.27916 -8.21773 -6.47009 0.72271 1.07288 1.35814 1.41929 1.55148 1.59504 1.69668 2.25733 2.67729 2.93664 3.75802 3.84806 3.89371 4.07119 4.36029 4.37080 4.39462 4.42564 4.45410 4.61252 4.69728 4.79886 4.89447 4.91034 4.96170 5.01782 5.02396 5.11469 5.21790 5.33388 5.39107 5.72883 5.97753 6.08486 6.23822 6.57310 6.84512 6.95733 7.22946 8.35791 8.52391 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.003865 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.292138 B = 7242.285879 C = 8092.283278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.307 6.307 3 C -0.064 4.064 4 C -0.075 4.075 5 H 0.074 0.926 6 C -0.142 4.142 7 C 0.151 3.849 8 N -0.732 5.732 9 C 0.394 3.606 10 C -0.367 4.367 11 C -0.030 4.030 12 C -0.345 4.345 13 C 0.259 3.741 14 C -0.472 4.472 15 H 0.086 0.914 16 C 0.025 3.975 17 N -0.752 5.752 18 Si 0.986 3.014 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.257 1.257 22 N -0.567 5.567 23 H 0.110 0.890 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.392 0.608 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.264 -6.984 -1.732 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.081 6.081 3 C -0.213 4.213 4 C -0.094 4.094 5 H 0.093 0.907 6 C -0.199 4.199 7 C 0.025 3.975 8 N -0.368 5.368 9 C 0.153 3.847 10 C -0.393 4.393 11 C -0.054 4.054 12 C -0.368 4.368 13 C 0.131 3.869 14 C -0.504 4.504 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.374 5.374 18 Si 0.806 3.194 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.180 1.180 22 N -0.290 5.290 23 H 0.128 0.872 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.227 0.773 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.120 0.880 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.282 -8.762 -1.772 16.010 hybrid contribution -0.274 1.556 0.119 1.584 sum -13.555 -7.206 -1.652 15.440 Atomic orbital electron populations 1.23440 0.91383 1.07392 1.05852 1.87113 1.10467 1.12372 1.98158 1.23289 0.97928 0.93771 1.06265 1.20948 0.93841 0.94823 0.99826 0.90727 1.21817 1.00308 1.01543 0.96268 1.21229 0.79941 0.95480 1.00815 1.44289 1.06279 1.04193 1.82001 1.18979 0.90061 0.86218 0.89428 1.20960 0.98910 0.92452 1.26941 1.21014 0.94122 0.96806 0.93459 1.21697 0.94895 0.98144 1.22112 1.18681 0.94237 0.86624 0.87311 1.19934 0.90808 0.94822 1.44811 0.89590 1.26963 1.05762 0.94278 0.92629 1.70254 1.38467 0.98980 1.29688 0.85161 0.75691 0.79260 0.79247 1.18855 1.19317 1.18036 1.68185 1.08150 1.26377 1.26267 0.87170 0.89628 0.89473 0.88807 0.88562 0.93747 0.92014 0.91280 0.92296 0.92442 0.77347 0.86240 0.85255 0.88002 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.76 113.37 1.22 -0.14 16 2 S -0.31 -6.02 21.19 -56.49 -1.20 -7.22 16 3 C -0.06 -1.19 5.38 71.98 0.39 -0.80 16 4 C -0.07 -1.78 2.42 -10.79 -0.03 -1.80 16 5 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 6 C -0.14 -3.49 8.89 71.98 0.64 -2.85 16 7 C 0.15 4.41 4.27 86.38 0.37 4.78 16 8 N -0.73 -29.29 5.45 -344.99 -1.88 -31.17 16 9 C 0.39 19.52 7.65 133.42 1.02 20.54 16 10 C -0.37 -16.60 9.34 22.73 0.21 -16.38 16 11 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 12 C -0.35 -17.95 9.83 22.87 0.22 -17.72 16 13 C 0.26 15.04 6.55 40.18 0.26 15.30 16 14 C -0.47 -26.67 9.14 23.46 0.21 -26.45 16 15 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 16 C 0.03 1.33 5.50 85.29 0.47 1.80 16 17 N -0.75 -41.44 11.46 21.84 0.25 -41.19 16 18 Si 0.99 39.32 29.56 68.60 2.03 41.34 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 N -0.57 -32.58 7.89 -186.58 -1.47 -34.05 16 23 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.27 7.18 -2.39 -0.02 1.25 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.62 7.13 -2.38 -0.02 1.60 16 31 H 0.06 1.67 7.91 -2.39 -0.02 1.65 16 32 H 0.06 1.63 7.93 -2.38 -0.02 1.61 16 33 H 0.39 16.15 7.78 -92.70 -0.72 15.43 16 34 H 0.12 4.57 6.68 -2.91 -0.02 4.55 16 35 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.28 13.74 8.29 -92.71 -0.77 12.97 16 Total: -1.00 -66.01 320.60 3.28 -62.72 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.33 Total: 34.45 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 5.22 Total: -24.87 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.10 Total: -106.42 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: -6.02 SS G_CDS: -1.20 Total: -7.22 kcal Total: -66.01 3.28 -62.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309909871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.801 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds