Wall clock time and date at job start Mon Mar 30 2020 07:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46695 * 2 1 4 4 H 1.08999 * 109.47335 * 55.00347 * 3 2 1 5 5 C 1.52997 * 109.46973 * 175.00127 * 3 2 1 6 6 S 1.81403 * 109.47346 * 184.99956 * 5 3 2 7 7 C 1.81398 * 103.00228 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47290 * 294.99927 * 3 2 1 9 9 C 1.39252 * 119.99444 * 85.00070 * 8 3 2 10 10 C 1.39708 * 120.78593 * 0.02562 * 9 8 3 11 11 C 1.38448 * 119.46860 * 179.97438 * 10 9 8 12 12 N 1.31531 * 121.11265 * 0.02562 * 11 10 9 13 13 C 1.33696 * 121.69954 * 359.97438 * 12 11 10 14 14 C 1.41454 * 119.80157 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00143 * 187.07373 * 14 13 12 16 16 C 1.40012 * 119.99636 * 7.07544 * 14 13 12 17 17 N 1.30742 * 120.00255 * 182.54827 * 16 14 13 18 18 Si 1.86805 * 120.00085 * 2.54053 * 16 14 13 19 19 H 1.48500 * 109.46971 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47343 * 300.00524 * 18 16 14 21 21 H 1.48504 * 109.46850 * 60.00338 * 18 16 14 22 22 C 1.39029 * 120.77915 * 180.25438 * 9 8 3 23 23 H 1.09000 * 109.46771 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47033 * 299.99329 * 1 2 3 25 25 H 1.08994 * 109.47545 * 60.00291 * 1 2 3 26 26 H 1.08997 * 109.47033 * 240.00670 * 2 1 3 27 27 H 1.08995 * 109.47311 * 120.00206 * 2 1 3 28 28 H 1.08998 * 109.47140 * 304.99698 * 5 3 2 29 29 H 1.08996 * 109.47175 * 65.00249 * 5 3 2 30 30 H 1.09002 * 109.47065 * 300.00118 * 7 6 5 31 31 H 1.08998 * 109.46970 * 59.99923 * 7 6 5 32 32 H 1.08998 * 109.46967 * 179.97438 * 7 6 5 33 33 H 0.96993 * 120.00374 * 265.00226 * 8 3 2 34 34 H 1.07992 * 120.26487 * 359.95154 * 10 9 8 35 35 H 1.08000 * 119.44633 * 180.02562 * 11 10 9 36 36 H 0.97010 * 119.99796 * 354.84283 * 17 16 14 37 37 H 1.08006 * 120.55957 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 16 4.1572 3.1526 0.2744 7 6 5.9546 2.9507 0.4114 8 7 1.6524 2.0975 -1.2518 9 6 0.3946 2.6832 -1.3707 10 6 -0.5102 2.6561 -0.3065 11 6 -1.7534 3.2474 -0.4543 12 7 -2.0975 3.8340 -1.5802 13 6 -1.2677 3.8865 -2.6271 14 6 -1.6795 4.5272 -3.8191 15 1 -1.0608 4.4734 -4.7026 16 6 -2.8892 5.2313 -3.8534 17 7 -3.2941 5.7814 -4.9682 18 14 -3.9249 5.3845 -2.3063 19 1 -5.1483 6.1713 -2.6056 20 1 -4.3108 4.0310 -1.8328 21 1 -3.1391 6.0727 -1.2508 22 6 0.0079 3.3044 -2.5528 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8570 0.8802 1.0113 29 1 4.0029 0.9838 -0.7597 30 1 6.1867 2.3488 1.2900 31 1 6.3333 2.4521 -0.4809 32 1 6.4240 3.9298 0.5069 33 1 2.2718 2.1232 -1.9978 34 1 -0.2423 2.1776 0.6238 35 1 -2.4524 3.2266 0.3687 36 1 -2.7226 5.7665 -5.7519 37 1 0.6787 3.3417 -3.3984 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310017960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:38 Heat of formation + Delta-G solvation = 13.022358 kcal Electronic energy + Delta-G solvation = -18012.690359 eV Core-core repulsion = 15301.189810 eV Total energy + Delta-G solvation = -2711.500549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.08471 -37.05614 -33.63725 -32.58292 -30.90062 -30.06276 -29.19508 -27.90369 -25.42897 -23.73759 -22.02074 -21.48756 -19.76330 -18.33838 -16.56054 -16.41170 -15.74339 -15.01076 -14.64049 -14.49432 -14.04081 -14.00067 -13.59938 -13.48457 -13.08743 -12.80427 -12.57122 -12.51370 -12.15682 -11.98681 -11.91578 -11.13802 -11.01136 -10.95087 -10.62010 -10.15868 -10.09015 -10.04056 -9.67237 -9.44417 -9.15525 -7.81157 -7.77791 -7.53386 -7.09219 -6.88398 -4.66593 1.50573 2.46051 2.71957 2.93638 3.73621 3.82500 3.86535 4.15925 4.52872 4.59204 4.78615 4.86244 4.89455 4.92561 5.12027 5.21881 5.31502 5.45792 5.54759 5.71194 5.78367 5.83676 5.92587 6.08872 6.16522 6.31288 6.51290 6.67248 6.73982 6.91265 7.24583 7.38739 7.43206 7.58043 8.12098 8.19610 8.31794 8.55290 8.81095 9.69464 10.14098 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025667 B = 0.005118 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.620964 B = 5469.065368 C = 5993.247097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.173 3.827 4 H 0.088 0.912 5 C -0.097 4.097 6 S -0.237 6.237 7 C -0.131 4.131 8 N -0.740 5.740 9 C 0.274 3.726 10 C -0.365 4.365 11 C 0.172 3.828 12 N -0.595 5.595 13 C 0.278 3.722 14 C -0.479 4.479 15 H 0.077 0.923 16 C 0.044 3.956 17 N -0.812 5.812 18 Si 1.159 2.841 19 H -0.338 1.338 20 H -0.280 1.280 21 H -0.295 1.295 22 C -0.334 4.334 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.393 0.607 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.280 0.720 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.860 -9.557 10.452 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.066 3.934 4 H 0.105 0.895 5 C -0.246 4.246 6 S -0.011 6.011 7 C -0.300 4.300 8 N -0.371 5.371 9 C 0.168 3.832 10 C -0.392 4.392 11 C 0.010 3.990 12 N -0.317 5.317 13 C 0.156 3.844 14 C -0.511 4.511 15 H 0.095 0.905 16 C -0.176 4.176 17 N -0.434 5.434 18 Si 0.995 3.005 19 H -0.272 1.272 20 H -0.208 1.208 21 H -0.223 1.223 22 C -0.361 4.361 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.227 0.773 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.157 -7.695 10.929 17.411 hybrid contribution 3.691 -2.213 -1.020 4.423 sum 14.848 -9.908 9.909 20.416 Atomic orbital electron populations 1.22137 0.94384 1.00752 1.03878 1.22010 0.97732 0.95854 1.01438 1.20511 0.89749 0.93555 0.89615 0.89460 1.23807 0.99732 0.96054 1.04985 1.87526 1.04542 1.12156 1.96836 1.23410 0.95913 1.06230 1.04436 1.44394 1.15271 1.62962 1.14503 1.17630 0.83581 0.88431 0.93531 1.20947 0.97974 1.20369 0.99907 1.21856 0.93033 0.90337 0.93773 1.66453 1.35069 1.27913 1.02232 1.18348 0.87261 0.87979 0.90859 1.20718 1.06207 1.27574 0.96568 0.90503 1.27823 0.96775 0.89430 1.03559 1.70668 1.37348 1.33488 1.01922 0.81735 0.71953 0.76301 0.70539 1.27183 1.20754 1.22300 1.20977 1.00262 1.17145 0.97712 0.93928 0.92220 0.90336 0.92068 0.92021 0.89205 0.89974 0.90830 0.90761 0.88203 0.77319 0.87277 0.85850 0.90867 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.22 37.16 0.31 -1.78 16 2 C -0.13 -1.48 5.61 -26.73 -0.15 -1.63 16 3 C 0.17 2.20 2.21 -67.93 -0.15 2.05 16 4 H 0.09 1.24 6.54 -51.93 -0.34 0.90 16 5 C -0.10 -0.99 5.46 37.16 0.20 -0.79 16 6 S -0.24 -2.90 22.11 -107.50 -2.38 -5.28 16 7 C -0.13 -1.08 10.76 101.05 1.09 0.00 16 8 N -0.74 -11.73 4.88 -52.04 -0.25 -11.99 16 9 C 0.27 5.57 5.50 -83.65 -0.46 5.11 16 10 C -0.36 -7.26 6.82 -38.95 -0.27 -7.53 16 11 C 0.17 3.81 11.17 -17.60 -0.20 3.61 16 12 N -0.60 -15.44 4.55 -11.21 -0.05 -15.49 16 13 C 0.28 7.47 6.39 -85.02 -0.54 6.92 16 14 C -0.48 -13.60 9.58 -37.69 -0.36 -13.96 16 15 H 0.08 2.19 8.05 -52.49 -0.42 1.77 16 16 C 0.04 1.25 5.52 -17.35 -0.10 1.16 16 17 N -0.81 -23.02 13.65 55.55 0.76 -22.26 16 18 Si 1.16 29.62 25.56 -169.99 -4.34 25.28 16 19 H -0.34 -8.52 7.11 56.52 0.40 -8.12 16 20 H -0.28 -7.08 6.67 56.52 0.38 -6.70 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 22 C -0.33 -7.98 9.72 -38.47 -0.37 -8.36 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.79 6.35 -51.93 -0.33 0.46 16 25 H 0.08 1.33 5.39 -51.93 -0.28 1.05 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.39 5.94 8.63 -40.82 -0.35 5.59 16 34 H 0.11 1.88 4.13 -52.49 -0.22 1.67 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.28 7.61 8.72 -40.82 -0.36 7.26 16 37 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -30.08 307.66 -7.98 -38.06 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.34 Total: 2.24 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.00 Total: -15.19 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.45 Total: -49.74 kcal Atomic # 14 Polarization: 29.62 SS G_CDS: -4.34 Total: 25.28 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.38 Total: -5.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.08 -7.98 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310017960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.082 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds