Wall clock time and date at job start Mon Mar 30 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.32117 * 122.70698 * 2 1 4 4 C 1.29691 * 116.86203 * 180.20890 * 3 2 1 5 5 N 1.38615 * 124.94858 * 179.84348 * 4 3 2 6 6 C 1.46499 * 120.00055 * 359.70131 * 5 4 3 7 7 H 1.09009 * 110.01587 * 325.06464 * 6 5 4 8 8 C 1.53877 * 110.03118 * 86.45002 * 6 5 4 9 9 C 1.54272 * 106.59492 * 119.28741 * 8 6 5 10 10 C 1.54887 * 104.19458 * 23.61135 * 9 8 6 11 11 H 1.08993 * 110.76202 * 80.55837 * 10 9 8 12 12 C 1.50704 * 110.75379 * 203.74451 * 10 9 8 13 13 H 1.07999 * 120.00261 * 118.54522 * 12 10 9 14 14 C 1.37882 * 119.99732 * 298.54804 * 12 10 9 15 15 N 1.31516 * 119.99583 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 120.00133 * 359.97438 * 14 12 10 17 17 H 1.48495 * 109.47167 * 90.00327 * 16 14 12 18 18 H 1.48497 * 109.47019 * 210.00110 * 16 14 12 19 19 H 1.48508 * 109.46981 * 330.00051 * 16 14 12 20 20 C 1.54261 * 110.03236 * 203.62260 * 6 5 4 21 21 S 1.70958 * 110.10181 * 359.58285 * 4 3 2 22 22 C 1.33321 * 122.70760 * 179.75684 * 2 1 3 23 23 C 1.50697 * 125.95532 * 0.02562 * 22 2 1 24 24 H 1.08994 * 109.46519 * 270.24733 * 1 2 3 25 25 H 1.08997 * 109.46594 * 30.24415 * 1 2 3 26 26 H 1.08999 * 109.46960 * 150.24318 * 1 2 3 27 27 H 0.96999 * 119.99961 * 179.70235 * 5 4 3 28 28 H 1.09004 * 110.03056 * 238.56780 * 8 6 5 29 29 H 1.08994 * 110.03133 * 359.95104 * 8 6 5 30 30 H 1.08998 * 110.48369 * 142.29090 * 9 8 6 31 31 H 1.08999 * 110.48058 * 264.79833 * 9 8 6 32 32 H 0.97004 * 119.99889 * 179.97438 * 15 14 12 33 33 H 1.09000 * 110.48772 * 335.77824 * 20 6 5 34 34 H 1.08996 * 110.49166 * 98.43282 * 20 6 5 35 35 H 1.09005 * 109.47486 * 180.02562 * 23 22 2 36 36 H 1.08996 * 109.47644 * 300.00420 * 23 22 2 37 37 H 1.08998 * 109.47056 * 60.00557 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2210 1.1117 0.0000 4 6 3.5112 0.9796 -0.0042 5 7 4.4168 2.0290 -0.0080 6 6 3.9348 3.4125 -0.0141 7 1 3.0195 3.4861 -0.6015 8 6 3.6760 3.8867 1.4267 9 6 4.6083 5.0920 1.6680 10 6 4.8983 5.6381 0.2480 11 1 4.0744 6.2595 -0.1027 12 6 6.1929 6.4094 0.2265 13 1 7.0086 6.0781 -0.3989 14 6 6.3358 7.5381 1.0054 15 7 7.4653 8.2115 0.9862 16 14 4.9247 8.1117 2.0867 17 1 5.0364 7.4768 3.4244 18 1 4.9819 9.5883 2.2332 19 1 3.6338 7.7259 1.4618 20 6 5.0153 4.3459 -0.5980 21 16 3.9322 -0.6773 0.0029 22 6 2.2275 -1.1218 0.0048 23 6 1.6792 -2.5255 0.0102 24 1 -0.3632 0.0044 1.0276 25 1 -0.3632 0.8878 -0.5176 26 1 -0.3633 -0.8922 -0.5101 27 1 5.3696 1.8474 -0.0067 28 1 2.6354 4.1915 1.5383 29 1 3.9082 3.0873 2.1303 30 1 4.1063 5.8476 2.2723 31 1 5.5309 4.7698 2.1509 32 1 7.5658 9.0058 1.5339 33 1 6.0046 3.9030 -0.4832 34 1 4.8102 4.5573 -1.6475 35 1 2.5042 -3.2379 0.0138 36 1 1.0680 -2.6734 0.9004 37 1 1.0688 -2.6805 -0.8795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336189484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:02 Heat of formation + Delta-G solvation = 29.995581 kcal Electronic energy + Delta-G solvation = -17770.545701 eV Core-core repulsion = 15059.781166 eV Total energy + Delta-G solvation = -2710.764535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.81810 -38.03468 -34.88268 -32.55313 -31.71577 -29.60322 -28.51696 -27.66420 -25.01842 -23.90291 -22.83465 -20.21878 -19.55052 -18.35636 -18.21160 -16.72457 -16.41207 -15.35634 -15.08798 -14.86642 -14.10836 -13.78232 -13.25162 -13.04736 -12.94111 -12.87444 -12.75828 -12.57694 -12.39789 -12.16823 -11.68115 -11.14686 -11.02166 -10.97645 -10.46727 -10.15059 -10.01850 -9.80149 -9.64961 -9.40259 -9.35792 -9.04999 -9.03304 -8.55562 -7.45346 -6.09058 -4.08354 1.09910 1.20570 1.84281 3.04170 3.28860 3.37610 3.39077 3.40234 4.41260 4.61303 5.02006 5.06997 5.19040 5.28290 5.37511 5.43032 5.45197 5.56514 5.57522 5.66846 5.76876 5.85430 6.07951 6.17136 6.26348 6.33614 6.46885 6.47646 6.57866 6.75563 6.84827 7.03654 7.24180 7.32873 7.50403 7.74574 8.18486 8.49838 8.93925 9.53946 11.04142 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041853 B = 0.004180 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.850721 B = 6696.258059 C = 7078.801904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.113 3.887 3 N -0.550 5.550 4 C 0.335 3.665 5 N -0.680 5.680 6 C 0.153 3.847 7 H 0.084 0.916 8 C -0.129 4.129 9 C -0.131 4.131 10 C 0.016 3.984 11 H 0.035 0.965 12 C -0.511 4.511 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.902 5.902 16 Si 0.882 3.118 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.264 1.264 20 C -0.110 4.110 21 S 0.061 5.939 22 C -0.283 4.283 23 C -0.057 4.057 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.412 0.588 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.174 -19.208 -1.344 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 N -0.276 5.276 4 C -0.037 4.037 5 N -0.319 5.319 6 C 0.047 3.953 7 H 0.102 0.898 8 C -0.169 4.169 9 C -0.169 4.169 10 C -0.003 4.003 11 H 0.053 0.947 12 C -0.549 4.549 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.540 5.540 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.189 1.189 20 C -0.149 4.149 21 S 0.312 5.688 22 C -0.406 4.406 23 C -0.117 4.117 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.249 0.751 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.396 -18.886 -1.277 21.596 hybrid contribution -1.022 0.450 0.774 1.359 sum -11.418 -18.436 -0.503 21.691 Atomic orbital electron populations 1.20326 0.87730 1.02927 1.02607 1.19756 0.97365 0.85898 0.98836 1.66293 1.02345 1.31009 1.27994 1.23516 0.90954 0.92122 0.97114 1.44616 1.06019 1.02961 1.78260 1.21908 0.98481 0.77926 0.96958 0.89752 1.22566 0.99903 0.98522 0.95869 1.22827 0.98085 0.95471 1.00488 1.20051 0.97863 0.92200 0.90195 0.94666 1.20973 0.98365 1.09273 1.26297 0.90837 1.24991 0.95366 0.96135 0.96558 1.69903 1.25024 1.18350 1.40754 0.86894 0.83633 0.76999 0.81304 1.20467 1.22260 1.18933 1.22590 0.96843 0.96160 0.99279 1.83839 1.08714 1.00507 1.75763 1.24852 0.93061 1.00341 1.22351 1.19984 1.00156 0.89473 1.02070 0.90855 0.90797 0.90993 0.75056 0.92222 0.92547 0.93573 0.91526 0.92670 0.91369 0.92074 0.91996 0.91332 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.06 36.01 0.36 -0.40 16 2 C 0.11 1.51 6.74 -84.18 -0.57 0.95 16 3 N -0.55 -8.75 9.91 -11.36 -0.11 -8.87 16 4 C 0.34 5.02 8.08 -87.67 -0.71 4.31 16 5 N -0.68 -10.10 5.15 -54.69 -0.28 -10.38 16 6 C 0.15 2.58 3.36 -66.81 -0.22 2.36 16 7 H 0.08 1.47 7.80 -51.92 -0.40 1.07 16 8 C -0.13 -2.32 6.59 -25.61 -0.17 -2.49 16 9 C -0.13 -2.75 5.07 -25.07 -0.13 -2.88 16 10 C 0.02 0.37 2.30 -89.77 -0.21 0.16 16 11 H 0.04 0.82 7.37 -51.93 -0.38 0.44 16 12 C -0.51 -13.97 9.12 -34.44 -0.31 -14.28 16 13 H 0.07 2.16 8.03 -52.49 -0.42 1.74 16 14 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 15 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 16 Si 0.88 21.73 24.46 -169.99 -4.16 17.57 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.26 -6.24 6.48 56.52 0.37 -5.88 16 20 C -0.11 -2.06 5.94 -25.07 -0.15 -2.21 16 21 S 0.06 0.76 23.21 -107.50 -2.50 -1.74 16 22 C -0.28 -3.40 6.57 -36.03 -0.24 -3.64 16 23 C -0.06 -0.48 9.54 36.00 0.34 -0.14 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.55 7.43 -51.93 -0.39 0.17 16 27 H 0.41 5.39 8.47 -40.82 -0.35 5.05 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 30 H 0.05 1.00 4.91 -51.93 -0.25 0.74 16 31 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.49 7.99 -51.93 -0.41 0.08 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -30.58 308.94 -9.25 -39.83 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.54 Total: 1.84 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.09 Total: -16.33 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.38 Total: -45.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.16 Total: 17.57 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.50 Total: -1.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.58 -9.25 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336189484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.826 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds