Wall clock time and date at job start Mon Mar 30 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.32117 * 122.70698 * 2 1 4 4 C 1.29691 * 116.86203 * 180.20890 * 3 2 1 5 5 N 1.38615 * 124.94858 * 179.84348 * 4 3 2 6 6 C 1.46499 * 120.00055 * 359.70131 * 5 4 3 7 7 H 1.09009 * 110.01587 * 325.06464 * 6 5 4 8 8 C 1.53877 * 110.03118 * 86.45002 * 6 5 4 9 9 C 1.54272 * 106.59492 * 119.28741 * 8 6 5 10 10 C 1.54887 * 104.19458 * 23.61135 * 9 8 6 11 11 H 1.08993 * 110.76202 * 80.55837 * 10 9 8 12 12 C 1.50704 * 110.75379 * 203.74451 * 10 9 8 13 13 H 1.07999 * 120.00261 * 118.54522 * 12 10 9 14 14 C 1.37882 * 119.99732 * 298.54804 * 12 10 9 15 15 N 1.31516 * 119.99583 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 120.00133 * 359.97438 * 14 12 10 17 17 H 1.48495 * 109.47167 * 90.00327 * 16 14 12 18 18 H 1.48497 * 109.47019 * 210.00110 * 16 14 12 19 19 H 1.48508 * 109.46981 * 330.00051 * 16 14 12 20 20 C 1.54261 * 110.03236 * 203.62260 * 6 5 4 21 21 S 1.70958 * 110.10181 * 359.58285 * 4 3 2 22 22 C 1.33321 * 122.70760 * 179.75684 * 2 1 3 23 23 C 1.50697 * 125.95532 * 0.02562 * 22 2 1 24 24 H 1.08994 * 109.46519 * 270.24733 * 1 2 3 25 25 H 1.08997 * 109.46594 * 30.24415 * 1 2 3 26 26 H 1.08999 * 109.46960 * 150.24318 * 1 2 3 27 27 H 0.96999 * 119.99961 * 179.70235 * 5 4 3 28 28 H 1.09004 * 110.03056 * 238.56780 * 8 6 5 29 29 H 1.08994 * 110.03133 * 359.95104 * 8 6 5 30 30 H 1.08998 * 110.48369 * 142.29090 * 9 8 6 31 31 H 1.08999 * 110.48058 * 264.79833 * 9 8 6 32 32 H 0.97004 * 119.99889 * 179.97438 * 15 14 12 33 33 H 1.09000 * 110.48772 * 335.77824 * 20 6 5 34 34 H 1.08996 * 110.49166 * 98.43282 * 20 6 5 35 35 H 1.09005 * 109.47486 * 180.02562 * 23 22 2 36 36 H 1.08996 * 109.47644 * 300.00420 * 23 22 2 37 37 H 1.08998 * 109.47056 * 60.00557 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2210 1.1117 0.0000 4 6 3.5112 0.9796 -0.0042 5 7 4.4168 2.0290 -0.0080 6 6 3.9348 3.4125 -0.0141 7 1 3.0195 3.4861 -0.6015 8 6 3.6760 3.8867 1.4267 9 6 4.6083 5.0920 1.6680 10 6 4.8983 5.6381 0.2480 11 1 4.0744 6.2595 -0.1027 12 6 6.1929 6.4094 0.2265 13 1 7.0086 6.0781 -0.3989 14 6 6.3358 7.5381 1.0054 15 7 7.4653 8.2115 0.9862 16 14 4.9247 8.1117 2.0867 17 1 5.0364 7.4768 3.4244 18 1 4.9819 9.5883 2.2332 19 1 3.6338 7.7259 1.4618 20 6 5.0153 4.3459 -0.5980 21 16 3.9322 -0.6773 0.0029 22 6 2.2275 -1.1218 0.0048 23 6 1.6792 -2.5255 0.0102 24 1 -0.3632 0.0044 1.0276 25 1 -0.3632 0.8878 -0.5176 26 1 -0.3633 -0.8922 -0.5101 27 1 5.3696 1.8474 -0.0067 28 1 2.6354 4.1915 1.5383 29 1 3.9082 3.0873 2.1303 30 1 4.1063 5.8476 2.2723 31 1 5.5309 4.7698 2.1509 32 1 7.5658 9.0058 1.5339 33 1 6.0046 3.9030 -0.4832 34 1 4.8102 4.5573 -1.6475 35 1 2.5042 -3.2379 0.0138 36 1 1.0680 -2.6734 0.9004 37 1 1.0688 -2.6805 -0.8795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336189484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:02 Heat of formation + Delta-G solvation = 11.457137 kcal Electronic energy + Delta-G solvation = -17771.349588 eV Core-core repulsion = 15059.781166 eV Total energy + Delta-G solvation = -2711.568422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87073 -39.46509 -36.20722 -34.39439 -32.91232 -30.46168 -30.18204 -29.15078 -25.87161 -25.69996 -24.01443 -21.55529 -21.29258 -19.54486 -19.32367 -18.58867 -17.51290 -16.84068 -16.62227 -16.01320 -15.71499 -14.85819 -14.74493 -14.26871 -14.18233 -14.09300 -13.80687 -13.71563 -13.55491 -13.21577 -12.88737 -12.82858 -12.61409 -12.26583 -11.88466 -11.79654 -11.66651 -11.54755 -11.27310 -11.06062 -10.76319 -10.67933 -10.42488 -10.02971 -8.49415 -8.29220 -6.32158 0.10476 0.19747 0.88717 1.32884 1.36535 1.46585 2.02588 2.30038 2.34086 3.06649 3.61743 3.78628 3.88041 4.08963 4.24765 4.32342 4.58666 4.62398 4.70783 4.76174 4.78171 4.82720 4.89813 4.90932 4.93402 4.99739 5.06877 5.10788 5.14906 5.27341 5.38199 5.53520 5.62692 5.75118 6.02613 6.25221 6.32054 6.74287 7.16125 7.33589 8.87488 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041853 B = 0.004180 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.850721 B = 6696.258059 C = 7078.801904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.082 3.918 3 N -0.575 5.575 4 C 0.308 3.692 5 N -0.683 5.683 6 C 0.171 3.829 7 H 0.082 0.918 8 C -0.118 4.118 9 C -0.127 4.127 10 C 0.009 3.991 11 H 0.033 0.967 12 C -0.512 4.512 13 H 0.037 0.963 14 C 0.014 3.986 15 N -0.951 5.951 16 Si 0.942 3.058 17 H -0.268 1.268 18 H -0.297 1.297 19 H -0.246 1.246 20 C -0.102 4.102 21 S 0.090 5.910 22 C -0.275 4.275 23 C -0.059 4.059 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.418 0.582 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.458 -21.594 -0.909 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 N -0.302 5.302 4 C -0.063 4.063 5 N -0.323 5.323 6 C 0.064 3.936 7 H 0.100 0.900 8 C -0.157 4.157 9 C -0.165 4.165 10 C -0.010 4.010 11 H 0.051 0.949 12 C -0.550 4.550 13 H 0.055 0.945 14 C -0.183 4.183 15 N -0.592 5.592 16 Si 0.768 3.232 17 H -0.194 1.194 18 H -0.225 1.225 19 H -0.170 1.170 20 C -0.140 4.140 21 S 0.341 5.659 22 C -0.398 4.398 23 C -0.118 4.118 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.257 0.743 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.702 -21.318 -0.850 24.830 hybrid contribution -0.268 1.057 0.565 1.229 sum -12.970 -20.260 -0.285 24.058 Atomic orbital electron populations 1.20398 0.85730 1.03738 1.03326 1.20250 0.98820 0.85710 1.00050 1.66300 1.03028 1.32864 1.28035 1.23655 0.91039 0.93167 0.98464 1.44346 1.06410 1.02229 1.79328 1.21495 0.97359 0.78848 0.95918 0.90031 1.22466 0.99348 0.97219 0.96699 1.22682 0.98337 0.96641 0.98832 1.20018 0.95127 0.93401 0.92503 0.94870 1.21289 0.99332 1.09513 1.24827 0.94468 1.25823 0.97801 0.96461 0.98242 1.70048 1.27417 1.19278 1.42423 0.85933 0.81147 0.76277 0.79864 1.19383 1.22454 1.16987 1.22439 0.97673 0.94836 0.99102 1.83729 1.09107 0.98282 1.74822 1.25441 0.92706 1.01786 1.19832 1.20156 1.00845 0.87229 1.03608 0.90097 0.91666 0.88531 0.74301 0.91522 0.91863 0.93935 0.92682 0.92639 0.91541 0.91472 0.91126 0.89791 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.06 71.24 0.72 -0.56 16 2 C 0.08 2.01 6.74 41.41 0.28 2.29 16 3 N -0.58 -17.39 9.91 -189.86 -1.88 -19.27 16 4 C 0.31 8.75 8.08 179.32 1.45 10.20 16 5 N -0.68 -19.46 5.15 -326.95 -1.68 -21.14 16 6 C 0.17 5.54 3.36 45.72 0.15 5.70 16 7 H 0.08 2.73 7.80 -2.38 -0.02 2.72 16 8 C -0.12 -4.02 6.59 31.32 0.21 -3.82 16 9 C -0.13 -5.20 5.07 31.67 0.16 -5.04 16 10 C 0.01 0.39 2.30 -10.25 -0.02 0.37 16 11 H 0.03 1.52 7.37 -2.39 -0.02 1.50 16 12 C -0.51 -28.62 9.12 25.60 0.23 -28.39 16 13 H 0.04 2.29 8.03 -2.91 -0.02 2.26 16 14 C 0.01 0.79 5.46 84.66 0.46 1.25 16 15 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 16 Si 0.94 44.82 24.46 68.60 1.68 46.50 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.25 -10.88 6.48 99.48 0.64 -10.24 16 20 C -0.10 -3.77 5.94 31.67 0.19 -3.58 16 21 S 0.09 2.03 23.21 -56.49 -1.31 0.72 16 22 C -0.27 -5.82 6.57 24.57 0.16 -5.66 16 23 C -0.06 -0.77 9.54 71.23 0.68 -0.09 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.10 1.16 7.43 -2.39 -0.02 1.14 16 27 H 0.42 10.54 8.47 -92.71 -0.78 9.76 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 30 H 0.04 1.76 4.91 -2.39 -0.01 1.75 16 31 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.07 2.46 7.63 -2.39 -0.02 2.44 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.87 7.99 -2.39 -0.02 0.85 16 Total: -1.00 -66.57 308.94 1.99 -64.58 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.22 Total: 15.01 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 4.67 Total: -27.32 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -3.26 Total: -99.50 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.68 Total: 46.50 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.31 Total: 0.72 kcal Total: -66.57 1.99 -64.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336189484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.038 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds