Wall clock time and date at job start Mon Mar 30 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33638 * 122.74965 * 2 1 4 4 S 1.76198 * 107.92364 * 179.97438 * 3 2 1 5 5 C 1.70982 * 90.28302 * 0.27749 * 4 3 2 6 6 C 1.50695 * 124.91452 * 179.83902 * 5 4 3 7 7 N 1.46900 * 112.84762 * 230.33323 * 6 5 4 8 8 C 1.46909 * 110.99977 * 309.66718 * 7 6 5 9 9 C 1.53001 * 109.46964 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46968 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99808 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00379 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99783 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00492 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46573 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47305 * 119.99613 * 14 12 10 17 17 H 1.48492 * 109.46876 * 239.99897 * 14 12 10 18 18 C 1.53776 * 113.61400 * 99.14004 * 6 5 4 19 19 C 1.53957 * 87.01952 * 220.04613 * 18 6 5 20 20 C 1.53774 * 113.61683 * 1.52841 * 6 5 4 21 21 N 1.29032 * 110.16621 * 359.84031 * 5 4 3 22 22 H 1.09001 * 109.46953 * 269.70220 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.69818 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.70448 * 1 2 3 25 25 H 1.07995 * 126.03596 * 0.04762 * 3 2 1 26 26 H 1.00907 * 111.00053 * 185.71660 * 7 6 5 27 27 H 1.09000 * 109.47098 * 299.99799 * 8 7 6 28 28 H 1.08999 * 109.46968 * 60.00239 * 8 7 6 29 29 H 1.09000 * 109.46943 * 299.99764 * 9 8 7 30 30 H 1.08999 * 109.47189 * 60.00245 * 9 8 7 31 31 H 0.96993 * 120.00086 * 180.02562 * 13 12 10 32 32 H 1.08995 * 113.61407 * 334.56023 * 18 6 5 33 33 H 1.09003 * 113.61545 * 105.46887 * 18 6 5 34 34 H 1.09005 * 113.53782 * 270.81232 * 19 18 6 35 35 H 1.09000 * 113.67189 * 139.93233 * 19 18 6 36 36 H 1.09009 * 113.61534 * 254.52765 * 20 6 5 37 37 H 1.08998 * 113.61624 * 25.43507 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0073 6 6 4.4835 -2.1271 -0.0143 7 7 4.1965 -3.1168 -1.0611 8 6 2.7872 -3.5299 -1.0229 9 6 2.5274 -4.5591 -2.1248 10 6 1.0816 -4.9824 -2.0860 11 1 0.4148 -4.5598 -1.3489 12 6 0.6101 -5.9098 -2.9908 13 7 1.4222 -6.4247 -3.8881 14 14 -1.1819 -6.4350 -2.9423 15 1 -1.8793 -5.7144 -1.8470 16 1 -1.8282 -6.1103 -4.2392 17 1 -1.2625 -7.8980 -2.7016 18 6 4.7154 -2.7478 1.3734 19 6 6.2031 -2.8499 0.9905 20 6 5.9543 -1.6799 0.0240 21 7 2.2199 -1.1084 -0.0066 22 1 -0.3633 -0.0053 1.0277 23 1 -0.3634 0.8927 -0.5091 24 1 -0.3633 -0.8873 -0.5184 25 1 1.8392 2.1307 0.0007 26 1 4.8093 -3.9146 -0.9824 27 1 2.5647 -3.9733 -0.0523 28 1 2.1493 -2.6601 -1.1800 29 1 2.7499 -4.1162 -3.0955 30 1 3.1652 -5.4288 -1.9673 31 1 1.0905 -7.0768 -4.5249 32 1 4.5228 -2.0603 2.1970 33 1 4.2303 -3.7149 1.5057 34 1 6.4605 -3.7830 0.4893 35 1 6.8828 -2.6051 1.8066 36 1 6.4680 -1.7861 -0.9316 37 1 6.1011 -0.6999 0.4780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336678133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:55 Heat of formation + Delta-G solvation = 41.963901 kcal Electronic energy + Delta-G solvation = -18193.548792 eV Core-core repulsion = 15483.303242 eV Total energy + Delta-G solvation = -2710.245550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44159 -39.90572 -36.19462 -34.37185 -32.85913 -30.67000 -28.59335 -27.60526 -26.68547 -25.95017 -23.45724 -22.37467 -20.54005 -20.16565 -18.68372 -18.27476 -17.12165 -16.82686 -16.44551 -15.91535 -15.70633 -15.10552 -14.81354 -14.64230 -14.20317 -14.15360 -13.63106 -13.50498 -13.39047 -13.17120 -13.02671 -12.82868 -12.48088 -12.26640 -12.04502 -11.85185 -11.74739 -11.53066 -11.41022 -11.15006 -10.59711 -10.40125 -10.21145 -9.65963 -9.23022 -8.21953 -6.32726 -0.23335 0.44198 0.80809 1.36540 1.37620 1.51441 1.82905 2.38746 3.08025 3.10907 3.20903 3.53113 3.67535 3.88649 3.95103 4.27296 4.35709 4.42173 4.60821 4.64958 4.70245 4.74131 4.81248 4.82644 4.92180 5.01634 5.06054 5.10525 5.18095 5.27895 5.36596 5.50701 5.67685 5.82457 6.10551 6.27309 6.50858 6.83125 6.92294 7.35839 8.90746 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.005994 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.527181 B = 4670.347210 C = 5794.689208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 C -0.266 4.266 4 S 0.173 5.827 5 C 0.049 3.951 6 C 0.150 3.850 7 N -0.664 5.664 8 C 0.086 3.914 9 C 0.035 3.965 10 C -0.538 4.538 11 H 0.052 0.948 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.274 1.274 18 C -0.159 4.159 19 C -0.123 4.123 20 C -0.121 4.121 21 N -0.496 5.496 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.207 0.793 26 H 0.346 0.654 27 H 0.003 0.997 28 H 0.083 0.917 29 H -0.011 1.011 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 16.376 11.669 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.405 4.405 4 S 0.428 5.572 5 C -0.228 4.228 6 C 0.054 3.946 7 N -0.296 5.296 8 C -0.042 4.042 9 C -0.003 4.003 10 C -0.577 4.577 11 H 0.071 0.929 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.199 1.199 18 C -0.201 4.201 19 C -0.160 4.160 20 C -0.160 4.160 21 N -0.212 5.212 22 H 0.104 0.896 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.224 0.776 26 H 0.167 0.833 27 H 0.021 0.979 28 H 0.101 0.899 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.918 16.775 11.022 21.577 hybrid contribution -1.996 -1.367 0.357 2.445 sum 5.922 15.408 11.379 20.049 Atomic orbital electron populations 1.20419 0.86288 1.03519 1.03477 1.20811 0.99483 0.86842 1.02235 1.27236 0.95505 1.04556 1.13204 1.83272 1.06764 0.99816 1.67334 1.26971 0.93474 0.99377 1.03016 1.20878 0.92409 0.89495 0.91786 1.60429 1.05908 1.16865 1.46358 1.21974 0.88012 0.98488 0.95747 1.18926 0.95182 0.92670 0.93507 1.21547 0.96301 1.23852 1.15989 0.92934 1.25960 1.02762 0.96112 0.94772 1.70111 1.37258 1.30295 1.19516 0.85388 0.79093 0.78200 0.78318 1.18908 1.20034 1.19925 1.23694 0.98544 1.00898 0.96920 1.22794 0.94905 0.98563 0.99726 1.23180 0.91342 0.99861 1.01570 1.66247 1.05790 1.32755 1.16414 0.89649 0.88289 0.92853 0.77561 0.83350 0.97877 0.89918 0.99243 0.99244 0.92687 0.89057 0.92747 0.89610 0.88060 0.89415 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 10.31 71.24 0.73 -1.23 16 2 C 0.04 1.13 6.74 41.52 0.28 1.41 16 3 C -0.27 -6.19 11.13 66.78 0.74 -5.44 16 4 S 0.17 3.97 21.50 -56.49 -1.21 2.76 16 5 C 0.05 1.58 6.25 88.52 0.55 2.13 16 6 C 0.15 4.58 1.17 3.30 0.00 4.58 16 7 N -0.66 -25.76 6.43 -471.28 -3.03 -28.79 16 8 C 0.09 4.14 4.86 86.30 0.42 4.56 16 9 C 0.03 2.01 5.23 29.85 0.16 2.16 16 10 C -0.54 -33.03 9.11 25.60 0.23 -32.79 16 11 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -58.98 13.29 21.45 0.28 -58.69 16 14 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 15 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 18 C -0.16 -4.21 7.22 31.18 0.23 -3.99 16 19 C -0.12 -2.43 7.74 31.18 0.24 -2.19 16 20 C -0.12 -2.64 7.11 31.12 0.22 -2.42 16 21 N -0.50 -18.23 7.41 -179.39 -1.33 -19.56 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.10 1.86 8.12 -2.39 -0.02 1.84 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.21 3.15 8.06 -2.91 -0.02 3.13 16 26 H 0.35 12.62 7.89 -89.69 -0.71 11.91 16 27 H 0.00 0.15 7.69 -2.39 -0.02 0.13 16 28 H 0.08 4.20 5.30 -2.39 -0.01 4.19 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.09 2.19 8.09 -2.39 -0.02 2.18 16 33 H 0.05 1.66 7.76 -2.39 -0.02 1.65 16 34 H 0.09 1.73 7.71 -2.38 -0.02 1.72 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.10 1.84 6.93 -2.39 -0.02 1.83 16 Total: -1.00 -73.50 314.27 1.37 -72.13 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.36 Total: 16.43 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 4.27 Total: -32.66 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -4.07 Total: -107.05 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.21 Total: 2.76 kcal Total: -73.50 1.37 -72.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336678133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.095 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds