Wall clock time and date at job start Mon Mar 30 2020 07:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46892 * 2 1 4 4 N 1.46497 * 109.47347 * 240.00026 * 2 1 3 5 5 C 1.34779 * 120.00017 * 84.99830 * 4 2 1 6 6 O 1.21283 * 119.99882 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.46767 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00578 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99626 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00079 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99699 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47654 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46760 * 120.00375 * 13 11 9 16 16 H 1.48498 * 109.47268 * 239.99708 * 13 11 9 17 17 C 1.50699 * 109.47157 * 119.99775 * 2 1 3 18 18 C 1.38240 * 120.40199 * 80.20980 * 17 2 1 19 19 N 1.31852 * 120.81564 * 180.28660 * 18 17 2 20 20 C 1.31868 * 121.75035 * 359.73433 * 19 18 17 21 21 C 1.38420 * 120.72875 * 0.02765 * 20 19 18 22 22 F 1.35108 * 120.44328 * 179.97438 * 21 20 19 23 23 C 1.38587 * 120.40614 * 259.99965 * 17 2 1 24 24 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47412 * 300.00069 * 1 2 3 26 26 H 1.09002 * 109.47174 * 59.99737 * 1 2 3 27 27 H 0.96994 * 120.00044 * 265.00111 * 4 2 1 28 28 H 1.08998 * 109.47112 * 300.00338 * 7 5 4 29 29 H 1.09003 * 109.47008 * 60.00027 * 7 5 4 30 30 H 1.09002 * 109.46635 * 299.99828 * 8 7 5 31 31 H 1.08991 * 109.46777 * 59.99840 * 8 7 5 32 32 H 0.96999 * 119.99888 * 179.97438 * 12 11 9 33 33 H 1.07993 * 119.59105 * 0.02562 * 18 17 2 34 34 H 1.07998 * 119.63112 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.80390 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7287 -3.5877 8 6 2.7011 0.2546 -4.7588 9 6 3.2023 -0.4561 -5.9894 10 1 3.4585 -1.5042 -5.9412 11 6 3.3339 0.2317 -7.1772 12 7 3.0225 1.5081 -7.2359 13 14 3.9559 -0.6491 -8.7026 14 1 4.2350 -2.0701 -8.3745 15 1 2.9243 -0.5811 -9.7686 16 1 5.2022 0.0038 -9.1776 17 6 2.0324 -0.7104 1.2305 18 6 2.0744 -2.0915 1.2728 19 7 2.5071 -2.7214 2.3472 20 6 2.9195 -2.0681 3.4158 21 6 2.9111 -0.6842 3.4457 22 9 3.3344 -0.0206 4.5438 23 6 2.4619 0.0130 2.3318 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 2.2491 -1.6317 -1.1526 28 1 3.6480 -1.1213 -3.3986 29 1 1.9760 -1.5505 -3.8326 30 1 1.7021 0.6475 -4.9480 31 1 3.3742 1.0761 -4.5136 32 1 3.1154 1.9920 -8.0714 33 1 1.7448 -2.6615 0.4168 34 1 3.2675 -2.6188 4.2772 35 1 2.4431 1.0929 2.3258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360763860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:52 Heat of formation + Delta-G solvation = -62.185317 kcal Electronic energy + Delta-G solvation = -19094.341749 eV Core-core repulsion = 15813.366774 eV Total energy + Delta-G solvation = -3280.974975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.34894 -40.77462 -39.18925 -35.91764 -33.47712 -32.81930 -31.54040 -30.78325 -29.57820 -25.86935 -24.70971 -24.21798 -22.30198 -20.94327 -19.83005 -17.94064 -17.66010 -17.16658 -16.85200 -16.19183 -15.79338 -15.59496 -14.99273 -14.43346 -14.31957 -14.12614 -13.84546 -13.53069 -13.41451 -13.07922 -12.79852 -12.28310 -12.14652 -11.99486 -11.59213 -11.18206 -10.95838 -10.59558 -10.19802 -9.99927 -9.98343 -9.70263 -9.38472 -9.19231 -9.03532 -8.96919 -8.34066 -5.97964 -4.02305 0.46643 0.64703 3.11628 3.17803 3.31677 3.34369 3.39381 3.42567 3.63470 3.98035 4.20077 4.33753 4.44629 4.46319 4.80003 4.93290 5.09202 5.32487 5.37281 5.38745 5.46181 5.53183 5.60958 5.89710 6.07513 6.16924 6.18922 6.20763 6.58494 6.85144 7.37855 7.72211 7.75347 7.83398 8.04761 8.36238 8.68218 9.06314 9.61495 11.12981 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.037225 B = 0.003250 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.006162 B = 8613.925508 C = 8830.866519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.184 3.816 3 H 0.100 0.900 4 N -0.741 5.741 5 C 0.513 3.487 6 O -0.531 6.531 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.107 4.107 18 C 0.095 3.905 19 N -0.451 5.451 20 C 0.070 3.930 21 C 0.052 3.948 22 F -0.129 7.129 23 C -0.099 4.099 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.397 0.603 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -6.823 21.540 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.079 3.921 3 H 0.118 0.882 4 N -0.396 5.396 5 C 0.302 3.698 6 O -0.405 6.405 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.109 4.109 18 C -0.062 4.062 19 N -0.159 5.159 20 C -0.089 4.089 21 C 0.031 3.969 22 F -0.108 7.108 23 C -0.126 4.126 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.232 0.768 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.181 0.819 34 H 0.185 0.815 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.875 -6.688 21.399 22.603 hybrid contribution 0.534 0.205 -0.554 0.797 sum -2.340 -6.483 20.845 21.955 Atomic orbital electron populations 1.22187 0.93763 1.02609 1.03146 1.19657 0.94453 0.97000 0.81023 0.88172 1.46376 1.69860 1.13960 1.09433 1.21615 0.76196 0.87629 0.84341 1.90675 1.48770 1.16329 1.84764 1.21888 1.01010 1.01111 0.93007 1.18905 0.98402 0.93312 0.89467 1.21258 1.44360 0.96366 0.94552 0.92527 1.25029 0.95541 0.94846 0.98989 1.70004 1.48210 1.08124 1.26476 0.86536 0.78506 0.79778 0.83145 1.19730 1.21020 1.21021 1.20996 0.98573 0.95125 0.96223 1.22685 0.95873 0.91290 0.96363 1.67773 1.08787 1.39809 0.99481 1.22951 0.98300 0.89644 0.97962 1.18782 1.01504 0.91826 0.84822 1.91542 1.87493 1.80768 1.50970 1.21573 0.97381 1.01965 0.91691 0.92138 0.91751 0.90741 0.76845 0.90153 0.90064 0.95779 0.95822 0.92995 0.81893 0.81489 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.47 37.16 0.35 -1.28 16 2 C 0.18 2.05 2.80 -69.08 -0.19 1.86 16 3 H 0.10 1.27 7.47 -51.93 -0.39 0.88 16 4 N -0.74 -9.38 5.03 -54.93 -0.28 -9.65 16 5 C 0.51 9.22 7.79 -10.98 -0.09 9.13 16 6 O -0.53 -11.76 15.64 5.56 0.09 -11.68 16 7 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 8 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 9 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.11 -1.00 4.97 -104.49 -0.52 -1.52 16 18 C 0.10 0.87 10.23 -17.54 -0.18 0.69 16 19 N -0.45 -4.48 10.36 -13.20 -0.14 -4.62 16 20 C 0.07 0.61 11.17 -17.47 -0.20 0.41 16 21 C 0.05 0.47 7.35 -39.28 -0.29 0.18 16 22 F -0.13 -1.21 17.28 2.25 0.04 -1.17 16 23 C -0.10 -0.89 9.81 -39.22 -0.38 -1.27 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.40 3.91 6.88 -40.82 -0.28 3.63 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.16 1.18 6.91 -52.49 -0.36 0.82 16 34 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -33.64 310.84 -6.44 -40.08 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.37 Total: -0.53 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.18 Total: -7.14 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.32 Total: -40.72 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.64 -6.44 -40.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360763860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.101 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds