Wall clock time and date at job start Mon Mar 30 2020 07:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46892 * 2 1 4 4 N 1.46497 * 109.47347 * 240.00026 * 2 1 3 5 5 C 1.34779 * 120.00017 * 84.99830 * 4 2 1 6 6 O 1.21283 * 119.99882 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.46767 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00578 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99626 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00079 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99699 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47654 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46760 * 120.00375 * 13 11 9 16 16 H 1.48498 * 109.47268 * 239.99708 * 13 11 9 17 17 C 1.50699 * 109.47157 * 119.99775 * 2 1 3 18 18 C 1.38240 * 120.40199 * 80.20980 * 17 2 1 19 19 N 1.31852 * 120.81564 * 180.28660 * 18 17 2 20 20 C 1.31868 * 121.75035 * 359.73433 * 19 18 17 21 21 C 1.38420 * 120.72875 * 0.02765 * 20 19 18 22 22 F 1.35108 * 120.44328 * 179.97438 * 21 20 19 23 23 C 1.38587 * 120.40614 * 259.99965 * 17 2 1 24 24 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47412 * 300.00069 * 1 2 3 26 26 H 1.09002 * 109.47174 * 59.99737 * 1 2 3 27 27 H 0.96994 * 120.00044 * 265.00111 * 4 2 1 28 28 H 1.08998 * 109.47112 * 300.00338 * 7 5 4 29 29 H 1.09003 * 109.47008 * 60.00027 * 7 5 4 30 30 H 1.09002 * 109.46635 * 299.99828 * 8 7 5 31 31 H 1.08991 * 109.46777 * 59.99840 * 8 7 5 32 32 H 0.96999 * 119.99888 * 179.97438 * 12 11 9 33 33 H 1.07993 * 119.59105 * 0.02562 * 18 17 2 34 34 H 1.07998 * 119.63112 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.80390 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7287 -3.5877 8 6 2.7011 0.2546 -4.7588 9 6 3.2023 -0.4561 -5.9894 10 1 3.4585 -1.5042 -5.9412 11 6 3.3339 0.2317 -7.1772 12 7 3.0225 1.5081 -7.2359 13 14 3.9559 -0.6491 -8.7026 14 1 4.2350 -2.0701 -8.3745 15 1 2.9243 -0.5811 -9.7686 16 1 5.2022 0.0038 -9.1776 17 6 2.0324 -0.7104 1.2305 18 6 2.0744 -2.0915 1.2728 19 7 2.5071 -2.7214 2.3472 20 6 2.9195 -2.0681 3.4158 21 6 2.9111 -0.6842 3.4457 22 9 3.3344 -0.0206 4.5438 23 6 2.4619 0.0130 2.3318 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 2.2491 -1.6317 -1.1526 28 1 3.6480 -1.1213 -3.3986 29 1 1.9760 -1.5505 -3.8326 30 1 1.7021 0.6475 -4.9480 31 1 3.3742 1.0761 -4.5136 32 1 3.1154 1.9920 -8.0714 33 1 1.7448 -2.6615 0.4168 34 1 3.2675 -2.6188 4.2772 35 1 2.4431 1.0929 2.3258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360763860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:51 Heat of formation + Delta-G solvation = -85.123393 kcal Electronic energy + Delta-G solvation = -19095.336419 eV Core-core repulsion = 15813.366774 eV Total energy + Delta-G solvation = -3281.969644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.05201 -41.60158 -40.48274 -37.02828 -35.52686 -33.80423 -32.98639 -32.02131 -30.51914 -27.71542 -25.65871 -24.93485 -23.87879 -22.13106 -21.22745 -19.00693 -18.57100 -18.35623 -17.87005 -17.37109 -16.90521 -16.74183 -16.47903 -16.31286 -15.21228 -15.00311 -14.90216 -14.56065 -14.36329 -14.22916 -14.15350 -13.75041 -13.40899 -13.20332 -12.92112 -12.83832 -12.49074 -12.42638 -11.89721 -11.61935 -11.26467 -10.96999 -10.74481 -10.69162 -10.56435 -10.19081 -9.97712 -8.16852 -6.30289 -0.23129 -0.06086 1.43644 1.44490 1.57831 1.72079 2.14062 2.44524 2.52471 2.89111 3.16560 3.25371 3.49562 3.68510 3.75828 3.98947 4.08325 4.16874 4.25150 4.53149 4.58778 4.60519 4.70595 4.76801 4.83048 4.97442 5.13197 5.22179 5.45340 5.49309 5.53982 5.66388 5.87832 6.19723 6.55706 6.69558 6.88824 7.33215 7.40080 8.95875 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.037225 B = 0.003250 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.006162 B = 8613.925508 C = 8830.866519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.187 3.813 3 H 0.082 0.918 4 N -0.716 5.716 5 C 0.517 3.483 6 O -0.582 6.582 7 C -0.121 4.121 8 C 0.041 3.959 9 C -0.541 4.541 10 H 0.076 0.924 11 C -0.007 4.007 12 N -0.937 5.937 13 Si 0.972 3.028 14 H -0.253 1.253 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.110 4.110 18 C 0.097 3.903 19 N -0.468 5.468 20 C 0.074 3.926 21 C 0.045 3.955 22 F -0.132 7.132 23 C -0.100 4.100 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.415 0.585 28 H 0.103 0.897 29 H 0.107 0.893 30 H -0.016 1.016 31 H -0.018 1.018 32 H 0.262 0.738 33 H 0.182 0.818 34 H 0.191 0.809 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 -9.484 22.386 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.082 3.918 3 H 0.100 0.900 4 N -0.371 5.371 5 C 0.306 3.694 6 O -0.461 6.461 7 C -0.160 4.160 8 C 0.004 3.996 9 C -0.579 4.579 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.796 3.204 14 H -0.176 1.176 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.112 4.112 18 C -0.060 4.060 19 N -0.175 5.175 20 C -0.084 4.084 21 C 0.024 3.976 22 F -0.111 7.111 23 C -0.127 4.127 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.253 0.747 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.002 0.998 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.199 0.801 34 H 0.208 0.792 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.435 -9.414 22.296 24.324 hybrid contribution 0.390 1.043 -0.709 1.320 sum -2.045 -8.371 21.587 23.244 Atomic orbital electron populations 1.22139 0.92859 1.03583 1.02656 1.19653 0.95121 0.96173 0.80850 0.89989 1.46039 1.68046 1.14586 1.08402 1.21277 0.75909 0.86833 0.85395 1.90666 1.51320 1.18497 1.85662 1.21655 1.03250 0.99858 0.91286 1.18695 0.94887 0.93705 0.92360 1.21762 1.43744 0.97298 0.95117 0.90591 1.26120 0.95705 0.95567 1.03077 1.70177 1.49769 1.10244 1.27569 0.85296 0.77638 0.79248 0.78198 1.17588 1.20701 1.20770 1.20724 0.99798 0.95254 0.95473 1.22960 0.95097 0.91123 0.96806 1.67855 1.09583 1.40081 0.99965 1.23346 0.97057 0.89670 0.98304 1.18821 1.01964 0.92066 0.84764 1.91537 1.87588 1.80866 1.51082 1.21733 0.96686 1.02659 0.91595 0.90392 0.89977 0.93510 0.74730 0.87849 0.87447 0.99756 0.99949 0.92914 0.80093 0.79203 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.47 71.98 0.68 -2.30 16 2 C 0.19 3.97 2.80 44.25 0.12 4.09 16 3 H 0.08 2.09 7.47 -2.39 -0.02 2.08 16 4 N -0.72 -17.06 5.03 -446.10 -2.24 -19.30 16 5 C 0.52 18.57 7.79 87.66 0.68 19.25 16 6 O -0.58 -26.93 15.64 -3.04 -0.05 -26.97 16 7 C -0.12 -4.60 5.64 29.85 0.17 -4.44 16 8 C 0.04 2.24 4.26 29.85 0.13 2.37 16 9 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 10 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 11 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 12 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 13 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 14 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 C -0.11 -1.86 4.97 -19.78 -0.10 -1.95 16 18 C 0.10 1.51 10.23 84.69 0.87 2.38 16 19 N -0.47 -8.04 10.36 -195.66 -2.03 -10.07 16 20 C 0.07 1.11 11.17 84.73 0.95 2.06 16 21 C 0.05 0.73 7.35 22.47 0.17 0.90 16 22 F -0.13 -2.26 17.28 44.97 0.78 -1.48 16 23 C -0.10 -1.63 9.81 22.51 0.22 -1.41 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.41 6.98 6.88 -92.71 -0.64 6.34 16 28 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 30 H -0.02 -0.99 8.10 -2.39 -0.02 -1.00 16 31 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.18 2.00 6.91 -2.91 -0.02 1.98 16 34 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -75.60 310.84 3.82 -71.78 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.47 Total: 7.97 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.58 Total: -9.13 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -3.99 Total: -88.13 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -75.60 3.82 -71.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360763860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.341 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds